tmem173


Basic Information

Item Value
gene id tmem173
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5962280 ~ 5987766 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672012.1
gtgtgtgtgtgtgtgagagtgtgactAAGTCTAAGCGTATGGGGAGAGGAGAGGGTAGGCGAAGAATAGCTCCTGATACTGAGAGAGACTAAGAGATagaagtagaaagagagagagatagagagagaggaaagacaGTATAGGAGAGAGAAACCGTGAGGAAGTGAAGACAAAAAGCAAGATAATAAAAGATAAGGAAGGAAAGCAGAAGGCAGAGCTGGTGTATAGTCCGCTGAATTACTTTTTAGACTTCTGATAAGCACAGCTGCAGACTCATCCGTCCTCCCGTGATCTGAGACAGTGGTGCTGATGGGGGATGAGAGCGTGGTCCCGAGGCCTCGGGGGTGGGCTCCGGCTGTGTGTGCGGTGGGTTTGAGTCTCACAGCTCTGGCGCTGGTCAGCCTGGTGGACCCCAGCTCTATTAGAGGAGCGTGTGAACTGGCTGCGCTGTCTCTGAGTCTGGGCGCTCTGCTGCACAGCCTGTGTCTGCTTACAGAGGAGTGGCTGTTCCATTCACAACAAAGgtaTGGTGGGAGCTTCAAGCGGATTCTTCAGGCCTGTTTCAGCAGGGCTAAtgttggtggtgtgtgtgtggtgtttctgATGCTGCTGATGGGAGGCTTCAGTTACTCACCTCAGCAATGGGCTTTGGTGGTCCTAACCAGCTCTTTATACACTCTGTTCAAGACCATCGGAGTGCTGGGTCCTGCTCCAGTGGAGATTTCTGAGGTGTCTGAGAGCAGGAAGATGGATGTGGCTCATGGCCTGGCCTGGTCCATCTACCTGGGCTACCTGAAGCTTGTGCTGCCAGAGCTGGAGGGGCAGGTGAAGAAGCACTGTAACGAGACCAGAGAGGTGCTGAACTCCGCCCGGCTCCACATCCTGCTGCCTCTGAGTGCAGCAGCTACAGCCAGGCTGGAGGAGGTGGACCGTAATGTGCAGTACCACAAAAACCTGCCTGACCTGCAGCTGGACCGGGCTGGGGTCAGAGGCAGAGTCTACAAACACAGCATCTACAAAATCACCGACCAGAACCAAAAGgattattactgtgtgGCGGAGTACGCCACCCCTCTGCTGACTCTGTATCAGATGTCTCAGGATGGCATTGCAGGGTTCAGTGCATGGGACAGGAGGCAGCAGGTCCTGCTCTTCTACAACACCCTCACTCACATCCTGGAGAGTTCTCTAGAGTGCCGCAACCGCTATCGCCTCATTCTCCTGGAAGATGATCAGGCTGCTGAACCTCATTACCTGTCCCAGGAGCTCATCAAAAACCTGCAGCAGGAGGAGCACGAGATCCCCATGGAACAGGGGCGTGAATTCCCCCGTCCCGTGGCAGAAGTGGGGCTGAAGAGAGCTCCCGTTCAGCACAACGGTGTTCAGGAGCAGCCGGCCTGCTCCATGCCCAGCCTGGAGATCAGCGGCCCCATGTCCCTGAGGTCTTTGCCTGAAGAGAACACAGACTACACCCATCACTGAAACAACACAGGCAGATAGAGCTGCTCTCAGCACAGTTtactgctaccaaaaaaagacTGTAGAAATGGATTGTAGAAATGGGGAATGTTCTCTAGTTTTGGTTTAAAAATCGACAACAATTGAGCTGTTGATTAAAATTCTGTAACAACAGCAGCCTGGAGTGGCAAGTTATTAGTAgttgtttgtttacttgttcACTTGtcttttcggtaccactttaaaataggaCTACCatt

Function

GO:

id name namespace
GO:0032606 type I interferon production biological_process
GO:0039528 cytoplasmic pattern recognition receptor signaling pathway in response to virus biological_process
GO:0002230 positive regulation of defense response to virus by host biological_process
GO:0005783 endoplasmic reticulum cellular_component

KEGG:

id description
K12654 TMEM173, MITA; transmembrane protein 173

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672012.1 True 1718 mRNA 0.52 7 5962280 5987766

Neighbor

gene id symbol gene type direction distance location
LOC103037091 NA coding upstream 230965 5696919 ~ 5731315 (+)
LOC103044251 NA coding upstream 467716 5491422 ~ 5494564 (+)
LOC103038898 NA coding upstream 477116 5480388 ~ 5485164 (+)
atp7a atp7a,LOC101485317 coding upstream 485849 5430689 ~ 5476431 (+)
atp10b NA coding upstream 554265 5339650 ~ 5408015 (+)
LOC103031741 NA coding downstream 20795 6008561 ~ 6011401 (+)
trnaa-agc_14 NA coding downstream 49036 6036802 ~ 6036874 (+)
trnaa-agc_15 NA coding downstream 49910 6037676 ~ 6037748 (+)
LOC103031423 NA coding downstream 284450 6272216 ~ 6291384 (+)
trappc11 trappc11,LOC107587085,LOC107731725,LOC107758539,LOC107559294 coding downstream 330554 6318320 ~ 6344698 (+)
G71518 ube2d2,UBE2D2,ube2d1,ube2d2l,LOC106611705,LOC105010898,LOC100695155 non-coding upstream 102916 5800403 ~ 5859364 (+)
G71528 LOC103035656,LOC108414340,LOC108274783 non-coding upstream 120577 5828888 ~ 5841703 (+)
G71527 NA non-coding upstream 133458 5824434 ~ 5828822 (+)
G71490 NA non-coding upstream 354334 5607718 ~ 5607946 (+)
G71489 NA non-coding upstream 358959 5603120 ~ 5603321 (+)
G71566 NA non-coding downstream 24456 6012222 ~ 6014382 (+)
G71608 brd8,LOC107758534 non-coding downstream 44419 6032185 ~ 6036659 (+)
G71611 NA non-coding downstream 98808 6086574 ~ 6086987 (+)
G71613 NA non-coding downstream 166115 6153881 ~ 6157418 (+)
G71628 NA non-coding downstream 357468 6345234 ~ 6345715 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 5261 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 283406 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 456642 5499908 ~ 5505638 (+)
G71247 NA other upstream 982269 4956298 ~ 4980011 (+)
G71249 NA other upstream 994373 4963702 ~ 4967907 (+)
G71682 LOC108430946,LOC108416517 other downstream 537875 6525641 ~ 6538794 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 893821 6881587 ~ 6885541 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 2881362 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 3155133 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 3980740 9968506 ~ 9970042 (+)

Expression


Co-expression Network