LOC103043333 (LOC108442486,LOC108275354)


Basic Information

Item Value
gene id LOC103043333
gene name LOC108442486,LOC108275354
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6161655 ~ 6221853 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672013.1
ACGAGCGGGCACGCACAACTCAAGCCGGAGCGCGAGAGTTGCGCGAGCGGGCGCGCGGCTGCTTAATTATCTACCTTAATTTGCACGCGCTGATTTTAAGTTTAATTGCATTTGTATTATCATTAGATTcgtgtttttatttaaagtattttttttactaacacAAAAACAGCACCGGCTCGTGCAAGTTTGAATAAGGATTTTGGGTTTTCTAAGGATTTGGCTCCGTGCGCGCgagtgcgtttgtgtgtgtgagggaaggagactgagtgtgtgtgaagtgtgtgttgagagagagagaaagagaaaaagaggacaGAAGGGGGAACCTGGACCTTTCCACAGCAAGTCCAGCAGCAAGACCCTGGCCCAGTGTGGATGCATGTAGTGGACGCACGCGCGCCCGTGCGTAGGACTCAACCGCTGTCCAGAAGTGTCCAACTCCGCTCGCGCCACCTTCAGCATCCCAGCCCCGGGTGCCTCGAGCTCCGGGGGGTGACGGTCTCGACCATGATCTCTGTAGGAATACTCCTGAACCTGGTCTTCATTAGAGGTTCGCTGTCCTCAGTGGTTCCTCTGTTTCCGGGGACGCTGGACTGTGAGGAAGCCGTGCAGGAATGTATATCTGAGCCCAAGTGCGAGAGACTGTACAGGCAGCTGGATTACTGTGTGGACGAGGAGGCGGTGGCACCGCTGGGTCCTGACACCAGGCAGGCCTGCAGCGATGCCCAGAATGCCCTGCTGCACTACCACAACCTGCAGGAGTGCAAGTGCCAGCGCGGCTCACGCAGAGAGCTCGTCTGCCTCAGAGTCTACTGGACCGTCCGGTTCCCACAAGggTACGATGACATTGAGACGTCCCCTTATGAGGACATTGAACTGGAGCTGGTGAGAAATGCGGAAAACTCCAAACTGGCCTCAATCGTGGCAGTCTCCTCATTTTCTCTGGATGGACAGAACCGGTGTCTGAAGGCGGCGCAGGACTGCGGTCTGTTTGAGAAGTGCGGGGCGCTGCGCTCCGAGTACGTGCTGGCCTGCACTAAGCGCGCGGTGGGCTCGGAGCGCTGTAACCGGCAGAAGTGCCACAGGGCGCTGCGGCGGTTCCTGGAGCGCGTGCCGGAGGAGTACAGCTTCAGCCTGCTCTTCTGCTCCTGCACCGACCCGCTGtgtggagagaggaggaggaagaccATTGTCCCCTCCTGCTCCTACGAGGAGAGAGAAACTCAGCCCAACTGCCTCCACCTGGAGATCTACTGCCTGAGGGACGACCTCTGCAGGTCGAGACTGGCTGATTTCCAGCAGAACTGCCAGCCCTCCCCTCACTCACCCTCAGGCTGTCTGCGCGAGAGCGGCGCTGTGTGCCTGAAGGCCTACGCCGGACTGATCGgtACGATCATGACGCCAAACTATGTGAGTAACAGCAGTACGGAGGTGTCTCAGTGGTGTAACTGTGAAGGCAGTGGTAACCAGTGGCAGGACTGTCTGCGTATTCTCCACATGTTCAACAGCAACGCCTGCCTGCGTAATGCCATTGATAACATGGGGAGCTCTAACCCTCGGCCTGTGGAGGGCACGCCCCTGCCCCCGCCTCGTCCCTCCCCTCACCTCCAGCACGACGAACTCCACGTTAACCTGCTGTCAGACCTCAACTCGgtGGAGGAAAGTGAGGAGGAAAagcaggaagaggaagaggaggaggaggagcaggaagAGATGGAAGCAGCGGAGGAGTTCAACGTCATCCCTCCGTTCTCGGACAAGGCCACAGTCACTAACCTGGGCGGCTCAGAGACGGGCAGGGTCCACAGCCGGGCCTCCAGCACCCTGGCTCCAgcgccaatgctaatgctaatgctaatgctgcaacTGCTGCTACTAACTACCCTCAGCCGGGGGTAgacatcacacacatacacgtacataaacatatacatagacacaaaaacacactctttctcgcatatgtacacacacac

Function

NR:

description
PREDICTED: GDNF family receptor alpha-4-like

GO:

id name namespace
GO:0014707 branchiomeric skeletal muscle development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672013.1 True 1979 mRNA 0.57 8 6161655 6221853

Neighbor

gene id symbol gene type direction distance location
LOC103032061 LOC108436848,LOC107680293 coding downstream 124901 6012219 ~ 6036754 (-)
LOC103035351 ube2d2,UBE2D2,ube2d1,ube2d2l,LOC106611705,LOC105010898,LOC100695155 coding downstream 302285 5844641 ~ 5859370 (-)
LOC103036182 cxxc5b,LOC103036182,LOC108444528,LOC107758529,LOC108274782,LOC107589097 coding downstream 360931 5770787 ~ 5800724 (-)
trpc3 trpc7,LOC108435597,LOC107678610 coding downstream 565630 5531871 ~ 5596025 (-)
gstp1 gstp1 coding downstream 649926 5500015 ~ 5511729 (-)
hars hars,LOC106611772,LOC107660169 coding upstream 71831 6293684 ~ 6315841 (-)
LOC103036141 LOC108430946 coding upstream 300204 6522057 ~ 6538782 (-)
LOC103027842 LOC108430992,LOC104947123,LOC107094991,LOC106517448,LOC103354384,LOC106905160,LOC108240514 coding upstream 348963 6570816 ~ 6583742 (-)
LOC103026932 NA coding upstream 363821 6585674 ~ 6593124 (-)
LOC103025929 adra2da,LOC108430987,LOC105904584,LOC107667592,LOC107757419 coding upstream 642171 6864024 ~ 6868262 (-)
G71612 NA non-coding downstream 74544 6086839 ~ 6087111 (-)
G71577 NA non-coding downstream 193734 5954620 ~ 5967921 (-)
G71554 NA non-coding downstream 295127 5866305 ~ 5866528 (-)
G71501 NA non-coding downstream 481545 5679805 ~ 5680110 (-)
G71496 NA non-coding downstream 482782 5642890 ~ 5678873 (-)
G71644 NA non-coding upstream 50398 6272251 ~ 6291512 (-)
G71646 trappc11 non-coding upstream 96376 6318229 ~ 6320682 (-)
G71659 NA non-coding upstream 127850 6349703 ~ 6350020 (-)
G71665 NA non-coding upstream 146903 6368756 ~ 6374213 (-)
G71675 LOC108430995,LOC108274926 non-coding upstream 233702 6455555 ~ 6459631 (-)
LOC103035656 LOC103035656,LOC108414340,LOC108274783 other downstream 319948 5829621 ~ 5841707 (-)
G71458 atp7a,LOC107554685,LOC107684827,LOC107745084,LOC107559604 other downstream 685280 5471666 ~ 5476375 (-)
trnaw-cca_42 NA other downstream 1237584 4924000 ~ 4924071 (-)
G71235 NA other downstream 1277167 4882170 ~ 4884488 (-)
G71175 NA other downstream 1748644 4411948 ~ 4413011 (-)
G71771 NA other upstream 555386 6777239 ~ 6824756 (-)
G71826 NA other upstream 835257 7057110 ~ 7057643 (-)
G71862 NA other upstream 1087922 7309775 ~ 7312926 (-)
LOC103027657 LOC108430978 other upstream 1329332 7551185 ~ 7590554 (-)
LOC103030515 wu:fb13g09,LOC108441781,LOC108274673,LOC107554714,LOC107716370,LOC107677527 other upstream 1552042 7773895 ~ 7842280 (-)

Expression


Co-expression Network