trappc11 (trappc11,LOC107587085,LOC107731725,LOC107758539,LOC107559294)


Basic Information

Item Value
gene id trappc11
gene name trappc11,LOC107587085,LOC107731725,LOC107758539,LOC107559294
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6318320 ~ 6344698 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672014.1
GAGGTAGCACATCGCGACACAACACCGGTGGCTGTGGCGGAGGGTCATGGGGTGTGGGCCCGGCTGCTCTGGGAGATAAACACGGATATTAATCAGGGTTTAATGTAAATGAAGTGGATGTAGACGGATTTAACAGACTGCAGCAGTAAAAGtttttttttagttccccTCTTGAACGGCCAGTTCTTGGTAAGATGAGTCCGACGCAGTGGGATCTCCCCCCAGAGCTGTGCTGCAGGCCAATGGCCTTCGTGGCTCTGACCGGTCTGGATGTGGTGTATAACGCAGTGCACAGAGCCATATGGGATGCTTTCTGTGCAAACAGGAGGGCAGACAGGGTGCCCATTTCCTTTAAAGTCCTGCCAGGTGACCACGAGTACCCGAAGTGTAGAACTAAGAGGACCTCCTACGAGTGGTACATTCCTAAAGGCATCCTGAAGACAGGCTGGATGAATAAACACCTGAACCTGGTGCCTTCTCTGGTGGTGCTGTTCTATGAGCTTGACTGGGACGATGCTCAGTGGAAGGAGAAGCAGTCGGAGTGTGCCACTAAAGTGGAAATTGTCAGAACAAGTCTGCAGGGGAGGAACACTAAGGTTGCAGTTGTTCTAATCCAGAAGAAGACTCCTCTTCCTCCAGGAGAGGATGTGGTGGCATCAGAGAGGGCTGCGGCTCTGTGTAATGCCTGCGATCTCTCTGGAAAATCCCTGTTTGTCCTCCCCCATACGGACCACCTAGTAGGATACATCATCAGGTTGGAGAATGCGTTTTATGAGCATGCTCAAACATATTACTATAATGAGATAAGGAGAGTGAAATCGCACAAAGAGTTCCTGAATAAAACGACTCATCAGCTGCTGTTTGTGAGGCACCAGTTTAAAACCGGTTTCTTCAGTGAGCTGAAGCAGGACACGCAGAATGCCCtcaaACACTACAGAACCGCCTACAGTCTTGTTCATGAGCTCAGAGCCCATGAGACCAACATGCTGGAGATCAAGACTTTGGCTGGCTTCATCAACtacaagATCTGTAGGCTCTGCTTCCAGCACAACACCCCTCTGGATGCCATCGCTCAGTTCAGGAAGCACATCGATCTGTGCAAGAAGAAGATTGGGAGTGCTGAGCTGGCCTTTGAGCACACCGCCTGGATGTCAAAACAatTCCAGTCATTTGGTGATCTGTTCGATGAGGCCATCAAACTGGGCCTCACGGCGATCCAGACGCAGAACCCTGGCTTTTATTACCAGCAGGCTGCCTGTTATGCCCAGGAGCGCAAACAGCAAGCCAACCAGCTCTGCAGCCATGAGcCTAATGTGAGTTACCCCACTCCTGACCCTGTGGAAACGGCTTCAGGAGCTCTGGACTTCTATGGACAGAGAGCATGGAGACAAGGCCACcagaGTATTGACCCACCTGACCCTGAAAAGGAGAAGCAGGGCATACTCGCTCTTCAGCTGAAGGAGAAAGATGTGCCTCATTCGGAGCTGATCATTGCtttactcagcaatgctgttgCACAGTTTAAGAAATACAAGTGTCCTCGTATGAAGAGCCatttgaTGGTTCAGATGGGAGAGGAGTACTACCACGCCAAAGACTACACCAAAGCTTTAAAATTGTTGGACTATGTTATGTGTGACTATCGGACTGAGCGCTGGTGGAGTCTCCTCACCTCTATCTTGTGTACGGCTCTAAAGTGCTCGTATTTGATGGGCCAAGTCAAAGACTACATTACCTACTCTATGGAGCTGGTGGGCAGAGCCTCTACTCTACGTGAAGATCAGAAATCCAGGATTGAGAAGAATCTGATCAGAGTGCTCATGAATGAGGTTCCGGAGGCGGAGCTGGACTGTGACCCAGGCTCAGTAAAGGCAGCTCAAGTGCTGTGGACGGATCGCGTCTCTCTGGGTGGCAGTAACGAGTTCACCGTTGAGGTTCAGGACTATGTGCCATTCATCCAGTGTAAGGCCAAGTTCCTGTCTCCCAGTTTCCACGTGGATGAGCCAGTGCAACTGCATGTTTATCTCAGGGCCGACTGCCCCCACCCCGTCCGCTTCGCCAAGCTGTGTGTCAGCCTCAGCAACCAGGAATATAATCAGTACTGCCTGGTGGAGGAGGCGTGCAAGGGGAAGGACATTCTGGAAGCTTCTTCTCAGGGGAACATGTGTCTGGTGCCCGGAAAGACCCGAAAATACTGTTTCAAATTTGTAGCCAGGACTGAGGATGTTGGCAGAAAGATAGAGATCACCAGTGTGGACCTGATGCTGGGCAGTGAGAATGGCCGGTGTGTGTATCTGAACTGGAGGGGTGGAGGTGGTGATGCTGCCTCTGCTCAGGAGGCTCTGCAGGCGTCACGCTCCTTTAAGAGGAGAACCCGTCTCCCAGAGCAACAGGTCGACTGGGACGCTGTTTCCATCCAATCCAGCACCATGGTCATATCCCGAGTTCCCCGAATTACTGTCCAGTTGCAGCATGAGCCACCAGCCCTGAGCAATGAGATGTACTGCATTACGgtcactgtccaatcagaagAAGACACGGTGGCCAAAGATGTTACTCTTACTGCTGGTCTCAAACCagGTCAGGATGCAAATCTCACCCAAACAACCCACGTCACACTGAACAGCTCAGAGGTGTGTGATGATGCTCATCCTGCCCTGCTAACTGATATCGCTGTTGGAGACTTGCAGCCAGGAcagaagATTGAGAAGAAGCTGTATATCCGCTGTGTCAGCACTGGATCCAGAATCTTCCTTTTCCACGTCTCTTACGCCATGAGCACCACAGTGGAGGGCAAAGACATCACATGCAGGTGTCACAAGGATGAAACCGTCACAATAGAGACCGTCATTCCATTTGAAGTAGCTGTCAAGTTTGTGTCCACTAAGtTTGAGCATCTGGACCGTGTTTATGTGGATGTGCCGTTCTTGCTGATGATGGACATTTTGAGTGCGTCTCCGTGGCCTGTGCATCTGGTCAGCAGTGAGCTCCAGCTGGCCTCCAGTATGGCCGCTGTTGATCAGCCTCAGAGTCAGGTGGAGGGAGTGGTACTGCAGACGGgcgagtgtgcgagtgagtgtttCAGTCTAAAATGCCCTCCGGTTCAGAATGGCACCAGCACAGTGGCAGCAGGACAGTACCTCATCTCCTGGAAGAGGAAATCTGTGTCTGCTGAGACGCCAGTGGTTAAAACAACTGTGATCCTCCCTCATATTATTGTAGAGACTATTCCTCTGTATGTCCATGCAGAGTTGCCCTCGTTTGGGCGTGTACGTGAGTCTCTCCCAGTGTGGTATCACATTGAGAACCGAACCGGAGTGGTTCAGGATGTGGACATATCTGTGGAGCCCAGTGATGCCTTCATGTTTTCCGGACTCAAGCAGGTACGCATGAGGATTCTGCCGGGTACGGAGCAGGAGATGGTGTATAATTTCTATCCCTTGATGGCTGGCTATCAGAACCTGCCTCTGCTGAATATCAACCTTCTTCGATTCCCCAATGTCTCCAGTCAGCTGCTGCGCCGCTTCCTCCCCACACGCATCTTCATTAAGccGCAGGGAAGAAATGGAGATGCCTCCATTGAAGCTGCCTGAGATTAGCTGCGTAAAAATGGTTTTATAATCTGATCTCAGAGCATTGGTTATCAAACGGATTTGGATAGTGCTTTGTTCTTCTGTCATTTTGAAAGAGGTTCCAGAAAACAAGTTCTGAGGTGTTTCAAACAAGCATAACTTTTCTGAAACCTGCATTTAAGAGTTGGTGTAGCAACATCAGATGTTGCCTCGGGGTTAGCAGTAGAGTTTTCTGGCTGAAGGCATACTGAGCTCTCCTGTTGCACCATTTTATTTGGGTAAACTGGTCCTGTGGGATCTGAAGAATGAAGAGAAACATTCCTTTTCTCTTTGGCTGGGAGGCAGTCCGCTCATctactgtgtgtctgtgtgtgtgtgagaagaatATGTTCACAATGTGTAATTACTAAACACAACTGCTCTTATAATGATGATGTAACATTGCATTATTAAATATAGTATTAATGTGGTTGAACTGGACTGACCTACACTGACCGTAGATTGTTGTTTGCTGTGACATAAGCCTGAAGCAGTGAGCATCATGCCTTTGtttcatttctttgattttatttaatattacgCTGCAAAGTCTgatgctgcttctgctgctgttaaTACATCTTCATTAATCCTGTcactaaaagaaaaatgttggaTAATGTTTAAAGAATCTGAAGCGATACTCCTTGTCTGtcttaaatgaaattaaataaatgattgttaAAGTTTA
>XM_022672015.1
ATCGCGACACAACACCGGTGGCTGTGGCGGAGGGTCATGGGGTGTGGGCCCGGCTGCTCTGGGAGATAAACACGGATATTAATCAGGGTTTAATGTAAATGAAGTGGATGTAGACGGATTTAACAGACTGCAGCAGTAAAAGtttttttttttagttccccTCTTGAACGGCCAGTTCTTGGTAAGATGAGTCCGACGCAGTGGGATCTCCCCCCAGAGCTGTGCTGCAGGCCAATGGCCTTCGTGGCTCTGACCGGTCTGGATGTGGTGTATAACGCAGTGCACAGAGCCATATGGGATGCTTTCTGTGCAAACAGGAGGGCAGACAGGGTGCCCATTTCCTTTAAAGTCCTGCCAGGTGACCACGAGTACCCGAAGTGTAGAACTAAGAGGACCTCCTACGAGTGGTACATTCCTAAAGGCATCCTGAAGACAGGCTGGATGAATAAACACCTGAACCTGGTGCCTTCTCTGGTGGTGCTGTTCTATGAGCTTGACTGGGACGATGCTCAGTGGAAGGAGAAGCAGTCGGAGTGTGCCACTAAAGTGGAAATTGTCAGAACAAGTCTGCAGGGGAGGAACACTAAGGTTGCAGTTGTTCTAATCCAGAAGAAGACTCCTCTTCCTCCAGGAGAGGATGTGGTGGCATCAGAGAGGGCTGCGGCTCTGTGTAATGCCTGCGATCTCTCTGGAAAATCCCTGTTTGTCCTCCCCCATACGGACCACCTAGTAGGATACATCATCAGGTTGGAGAATGCGTTTTATGAGCATGCTCAAACATATTACTATAATGAGATAAGGAGAGTGAAATCGCACAAAGAGTTCCTGAATAAAACGACTCATCAGCTGCTGTTTGTGAGGCACCAGTTTAAAACCGGTTTCTTCAGTGAGCTGAAGCAGGACACGCAGAATGCCCtcaaACACTACAGAACCGCCTACAGTCTTGTTCATGAGCTCAGAGCCCATGAGACCAACATGCTGGAGATCAAGACTTTGGCTGGCTTCATCAACtacaagATCTGTAGGCTCTGCTTCCAGCACAACACCCCTCTGGATGCCATCGCTCAGTTCAGGAAGCACATCGATCTGTGCAAGAAGAAGATTGGGAGTGCTGAGCTGGCCTTTGAGCACACCGCCTGGATGTCAAAACAatTCCAGTCATTTGGTGATCTGTTCGATGAGGCCATCAAACTGGGCCTCACGGCGATCCAGACGCAGAACCCTGGCTTTTATTACCAGCAGGCTGCCTGTTATGCCCAGGAGCGCAAACAGCAAGCCAACCAGCTCTGCAGCCATGAGcCTAATGTGAGTTACCCCACTCCTGACCCTGTGGAAACGGCTTCAGGAGCTCTGGACTTCTATGGACAGAGAGCATGGAGACAAGGCCACcagaGTATTGACCCACCTGACCCTGAAAAGGAGAAGCAGGGCATACTCGCTCTTCAGCTGAAGGAGAAAGATGTGCCTCATTCGGAGCTGATCATTGCtttactcagcaatgctgttgCACAGTTTAAGAAATACAAGTGTCCTCGTATGAAGAGCCatttgaTGGTTCAGATGGGAGAGGAGTACTACCACGCCAAAGACTACACCAAAGCTTTAAAATTGTTGGACTATGTTATGTGTGACTATCGGACTGAGCGCTGGTGGAGTCTCCTCACCTCTATCTTGTGTACGGCTCTAAAGTGCTCGTATTTGATGGGCCAAGTCAAAGACTACATTACCTACTCTATGGAGCTGGTGGGCAGAGCCTCTACTCTACGTGAAGATCAGAAATCCAGGATTGAGAAGAATCTGATCAGAGTGCTCATGAATGAGGTTCCGGAGGCGGAGCTGGACTGTGACCCAGGCTCAGTAAAGGCAGCTCAAGTGCTGTGGACGGATCGCGTCTCTCTGGGTGGCAGTAACGAGTTCACCGTTGAGGTTCAGGACTATGTGCCATTCATCCAGTGTAAGGCCAAGTTCCTGTCTCCCAGTTTCCACGTGGATGAGCCAGTGCAACTGCATGTTTATCTCAGGGCCGACTGCCCCCACCCCGTCCGCTTCGCCAAGCTGTGTGTCAGCCTCAGCAACCAGGAATATAATCAGTACTGCCTGGTGGAGGAGGCGTGCAAGGGGAAGGACATTCTGGAAGCTTCTTCTCAGGGGAACATGTGTCTGGTGCCCGGAAAGACCCGAAAATACTGTTTCAAATTTGTAGCCAGGACTGAGGATGTTGGCAGAAAGATAGAGATCACCAGTGTGGACCTGATGCTGGGCAGTGAGAATGGCCGGTGTGTGTATCTGAACTGGAGGGGTGGAGGTGGTGATGCTGCCTCTGCTCAGGAGGCTCTGCAGGCGTCACGCTCCTTTAAGAGGAGAACCCGTCTCCCAGAGCAACAGGTCGACTGGGACGCTGTTTCCATCCAATCCAGCACCATGGTCATATCCCGAGTTCCCCGAATTACTGTCCAGTTGCAGCATGAGCCACCAGCCCTGAGCAATGAGATGTACTGCATTACGgtcactgtccaatcagaagAAGACACGGTGGCCAAAGATGTTACTCTTACTGCTGGTCTCAAACCagGTCAGGATGCAAATCTCACCCAAACAACCCACGTCACACTGAACAGCTCAGAGGTGTGTGATGATGCTCATCCTGCCCTGCTAACTGATATCGCTGTTGGAGACTTGCAGCCAGGAcagaagATTGAGAAGAAGCTGTATATCCGCTGTGTCAGCACTGGATCCAGAATCTTCCTTTTCCACGTCTCTTACGCCATGAGCACCACAGTGGAGGGCAAAGACATCACATGCAGGTGTCACAAGGATGAAACCGTCACAATAGAGACCGTCATTCCATTTGAAGTAGCTGTCAAGTTTGTGTCCACTAAGtTTGAGCATCTGGACCGTGTTTATGTGGATGTGCCGTTCTTGCTGATGATGGACATTTTGAGTGCGTCTCCGTGGCCTGTGCATCTGGTCAGCAGTGAGCTCCAGCTGGCCTCCAGTATGGCCGCTGTTGATCAGCCTCAGAGTCAGGTGGAGGGAGTGGTACTGCAGACGGgcgagtgtgcgagtgagtgtttCAGTCTAAAATGCCCTCCGGTTCAGAATGGCACCAGCACAGTGGCAGCAGGACAGTACCTCATCTCCTGGAAGAGGAAATCTGTGTCTGCTGAGACGCCAGTGGTTAAAACAACTGTGATCCTCCCTCATATTATTGTAGAGACTATTCCTCTGTATGTCCATGCAGAGTTGCCCTCGTTTGGGCGTGTACGTGAGTCTCTCCCAGTGTGGTATCACATTGAGAACCGAACCGGAGTGGTTCAGGATGTGGACATATCTGTGGAGCCCAGTGATGCCTTCATGTTTTCCGGACTCAAGCAGGTACGCATGAGGATTCTGCCGGGTACGGAGCAGGAGATGGTGTATAATTTCTATCCCTTGATGGCTGGCTATCAGAACCTGCCTCTGCTGAATATCAACCTTCTTCGATTCCCCAATGTCTCCAGTCAGCTGCTGCGCCGCTTCCTCCCCACACGCATCTTCATTAAGccGCAGGGAAGAAATGGAGATGCCTCCATTGAAGCTGCCTGAGATTAGCTGCGTAAAAATGGTTTTATAATCTGATCTCAGAGCATTGGTTATCAAACGGATTTGGATAGTGCTTTGTTCTTCTGTCATTTTGAAAGAGGTTCCAGAAAACAAGTTCTGAGGTGTTTCAAACAAGCATAACTTTTCTGAAACCTGCATTTAAGAGTTGGTGTAGCAACATCAGATGTTGCCTCGGGGTTAGCAGTAGAGTTTTCTGGCTGAAGGCATACTGAGCTCTCCTGTTGCACCATTTTATTTGGGTAAACTGGTCCTGTGGGATCTGAAGAATGAAGAGAAACATTCCTTTTCTCTTTGGCTGGGAGGCAGTCCGCTCATctactgtgtgtctgtgtgtgtgtgagaagaatATGTTCACAATGTGTAATTACTAAACACAACTGCTCTTATAATGATGATGTAACATTGCATTATTAAATATAGTATTAATGTGGTTGAACTGGACTGACCTACACTGACCGTAGATTGTTGTTTGCTGTGACATAAGCCTGAAGCAGTGAGCATCATGCCTTTGtttcatttctttgattttatttaatattacgCTGCAAAGTCTgatgctgcttctgctgctgttaaTACATCTTCATTAATCCTGTcactaaaagaaaaatgttggaTAATGTTTAAAGAATCTGAAGCGATACTCCTTGTCTGtcttaaatgaaattaaataaatgattgttaAAGTTTA

Function

symbol description
trappc11 Acts upstream of or within several processes, including liver development; protein N-linked glycosylation; and retina development in camera-type eye. Predicted to be located in Golgi apparatus. Used to study fatty liver disease. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2S. Orthologous to human TRAPPC11 (trafficking protein particle complex subunit 11).

NR:

description
trafficking protein particle complex subunit 11

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0001889 liver development biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0005794 Golgi apparatus cellular_component

KEGG:

id description
K20308 TRAPPC11; trafficking protein particle complex subunit 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672014.1 True 4302 mRNA 0.49 30 6318320 6344698
XM_022672015.1 False 4294 mRNA 0.49 31 6318330 6344698

Neighbor

gene id symbol gene type direction distance location
LOC103031423 NA coding upstream 26936 6272216 ~ 6291384 (+)
trnaa-agc_15 NA coding upstream 280572 6037676 ~ 6037748 (+)
trnaa-agc_14 NA coding upstream 281446 6036802 ~ 6036874 (+)
LOC103031741 NA coding upstream 306919 6008561 ~ 6011401 (+)
tmem173 NA coding upstream 330554 5962280 ~ 5987766 (+)
LOC103029834 LOC108430996 coding downstream 8941 6353639 ~ 6372363 (+)
LOC103028894 stox2b,LOC108430995,LOC108274926,LOC107680916,LOC107758540 coding downstream 29851 6374549 ~ 6462450 (+)
LOC103043030 LOC108430994,LOC108274927 coding downstream 127480 6472178 ~ 6509018 (+)
LOC103042719 rbm22,LOC108430993,LOC102796909,LOC107758467 coding downstream 165263 6509961 ~ 6520471 (+)
LOC103027224 LOC103027224,LOC108430945,LOC108274535,LOC107715168,LOC107678618,LOC103354395 coding downstream 196718 6541416 ~ 6559735 (+)
G71613 NA non-coding upstream 160902 6153881 ~ 6157418 (+)
G71611 NA non-coding upstream 231333 6086574 ~ 6086987 (+)
G71608 brd8,LOC107758534 non-coding upstream 281661 6032185 ~ 6036659 (+)
G71567 NA non-coding upstream 300217 5966554 ~ 6018103 (+)
G71628 NA non-coding downstream 536 6345234 ~ 6345715 (+)
LOC111193077 NA non-coding downstream 294968 6639666 ~ 6662003 (+)
G71747 adra2da,LOC108430987,LOC105904584 non-coding downstream 522350 6867048 ~ 6868404 (+)
G71787 NA non-coding downstream 527450 6872148 ~ 6872364 (+)
G71808 NA non-coding downstream 708325 7053023 ~ 7053324 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 361301 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 639446 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 812682 5499908 ~ 5505638 (+)
G71247 NA other upstream 1338309 4956298 ~ 4980011 (+)
G71682 LOC108430946,LOC108416517 other downstream 180943 6525641 ~ 6538794 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 536889 6881587 ~ 6885541 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 2524430 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 2798201 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 3623808 9968506 ~ 9970042 (+)

Expression


Co-expression Network