LOC103042719 (rbm22,LOC108430993,LOC102796909,LOC107758467)


Basic Information

Item Value
gene id LOC103042719
gene name rbm22,LOC108430993,LOC102796909,LOC107758467
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6509961 ~ 6520471 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672024.1
CGGATGTGACGCAGCTGCTGGTCTTCGCGGTTCCTACCTGAGCAGCTGCAGCGATGGCGACGTCTTTAGGATCGAATACCTACAACAGACAGAACTGGGAGGATTCGGACTTTCCTATTCTCTGTCAAACATGTTTAGGGGAAAATCCTTACATTCGCATGtccaaGGAGAAATATGGAAAAGAATGCAAGATCTGTGCAAGGCCCTTCACTGTGTTCCGCTGGTGTCCGGGGGTTCGGATGCGCTTTAAGAAGACGGAGGTTTGTCAGACGTGCAGTAAGATGAAGAATGTGTGTCAGACCTGTCTACTGGATCTGGAGTACGGTCTTCCTATCCAGGTTAGAGACACTGGCCTGTCCATCAAAGATGATGTACCAAAATCAGATGTCAACAAggaatattacacacagaacatGGAAAGAGAGATCCAGAACTCAGACGGTACACGGCCGGTGGGCATGCTTGGTAAAGCGCCCAGCTCCAGTGATATGCTGCTGAAACTTGCCCGCACCTCACCCTACTACAAGAGAAATCGCCCCCACATCTGCTCCTTCTGGGTGAAGGGAGAGTgtaggagaggagaggagtgcCCTTACAGGCATGAGAAGCCTACAGATCCCGATGATCCTCTGGCGGATCAGAACATTAAAGACCGATTTTATGGCATCAATGACCCAGTTGCTAATAAACTGCTGCAGAGAGCCTCTACCATGCCCAGACTGGATCCACCTGAGGACAAGACCATCAGCACCCTCTACATCGGGGGTTTGGGTGAGAACATCACAGACTCAGAGCTCAGGAGCCATTTCTACCAGTTTGGTGAGATTCGCACCATTACTCTAGTGCAGAGGCAGCAGTGTGCCTTCATTCAGTTCGCTACGAGACAAGCGGCTGAACTGGCTGCAGAGAAATCCTTCAACAAGCTCATCGTCAACGGCCGCCGGCTCACCGTCAAGTGGGGCCGCTCACAGGCAGCCAAGAGCAAGGAGATTAAAGAAGGCTACAGTGAGATGGGCACCAGACTGGAGCCTGTTCCTGGTCTGcctgcagCTCTGCCCCCGCCTCCAGCTTTGGAAGATGAGACCCCAGCTAACTACTTTAATCTGGACCCCAGCAGCTCTTCAGCAATGTTGAATCTTAACCTGCCCCTCCCACCTGGCCTAGCCAACCCACCACCTCCAGGTTTTGGCCCTCCAGTGTTCCACCCCATGGGcccacctcctcctcccccaATGGCCTTGAGACCCCCAGGGCACATCCACTACCCATCTCAGGACCCTCAGAGAATGGGCACTCACGCTGCAACACGCCACGGAGACTAGAAGCTTCATCCTTACCAGATTCTGGGTTCATTGGTCGACTTCAGCTGAGACTGAAGAACTGCTGAGAGTGATCGTCTGATGAAAGGCCAGAGTGACGTCGTGCAGAGCATGACTGCCTCTGTTTATAAAGCTTATGGCTCTAGCTGATGAGATGACCCTTATTTTACTGACCCATAATTAGACTGACCCTGATGACCTTTCAGATAGAGGGAGGAGTTAGGGTAGAGGCACTGTTGGATTTTGAGAAATGGAGAGTGATGTCAATGTTAACAGCACAGGGTTTAGAGCTCATGTTTAAGTTTACACAGGAGCACAGCAACACGATTAACAGTGTCTGCCTAATTTGCTTAATTAGCCGTACAGAAAGTAACGAAATAAAACTGTGAACTAATCAACGTTTTCAATTGTTTGTCAGGTTGTTTACAGTAAAGGAGTTCTTCACACCCTTGCTGTTTGAGTGACTCTAATAGTTGATCTCTTTTGTATTATGTCAAAACCTCATGATTATTGGACTAATATAATGCTTTTATCTATTAGCCAGATTTTTTTAGGTTgacattttgaacatttttgtaATGTACCTGTTTATTACACTTTCAaatatattgggaaaaaaaatcttactctTATATACCTAGTTCCACTTACAGAATATTTTGAAACACATGATAGAAGCGGGGAAATGATGAAACGTTTAGGCAGCTATAGTCCTAAAGGTCTAGATTCCTGCACTTTTGTACGTTTCCTGTTTATTCACACTTGATTAAACTCAcccaataattattatatagcTCAGGAAATCTGACTCTGGCCCTGCTTTCCACTCGTGTTTAAATCTATCATTAAACCTTGTATTTGCGA

Function

symbol description
rbm22 Predicted to enable U6 snRNA binding activity and pre-mRNA binding activity. Acts upstream of or within chordate embryonic development. Located in nucleus. Orthologous to human RBM22 (RNA binding motif protein 22).

NR:

description
PREDICTED: pre-mRNA-splicing factor RBM22-like isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12872 RBM22, SLT11; pre-mRNA-splicing factor RBM22/SLT11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672024.1 True 2183 mRNA 0.47 10 6509961 6520471

Neighbor

gene id symbol gene type direction distance location
LOC103043030 LOC108430994,LOC108274927 coding upstream 943 6472178 ~ 6509018 (+)
LOC103028894 stox2b,LOC108430995,LOC108274926,LOC107680916,LOC107758540 coding upstream 47511 6374549 ~ 6462450 (+)
LOC103029834 LOC108430996 coding upstream 137598 6353639 ~ 6372363 (+)
trappc11 trappc11,LOC107587085,LOC107731725,LOC107758539,LOC107559294 coding upstream 165263 6318320 ~ 6344698 (+)
LOC103031423 NA coding upstream 218577 6272216 ~ 6291384 (+)
LOC103027224 LOC103027224,LOC108430945,LOC108274535,LOC107715168,LOC107678618,LOC103354395 coding downstream 20945 6541416 ~ 6559735 (+)
LOC103026234 NA coding downstream 84833 6605304 ~ 6633875 (+)
LOC103042411 LOC108430989 coding downstream 158125 6678596 ~ 6719028 (+)
bnip1 bnip1,bnip1a,LOC108430943,LOC107598374,LOC107756689,LOC105024416 coding downstream 412919 6933390 ~ 6940362 (+)
LOC103023840 cpeb4,LOC108430986 coding downstream 618565 7139036 ~ 7173548 (+)
G71628 NA non-coding upstream 164246 6345234 ~ 6345715 (+)
G71613 NA non-coding upstream 352543 6153881 ~ 6157418 (+)
G71611 NA non-coding upstream 422974 6086574 ~ 6086987 (+)
G71608 brd8,LOC107758534 non-coding upstream 473302 6032185 ~ 6036659 (+)
G71566 NA non-coding upstream 495579 6012222 ~ 6014382 (+)
LOC111193077 NA non-coding downstream 119195 6639666 ~ 6662003 (+)
G71747 adra2da,LOC108430987,LOC105904584 non-coding downstream 346577 6867048 ~ 6868404 (+)
G71787 NA non-coding downstream 351677 6872148 ~ 6872364 (+)
G71808 NA non-coding downstream 532552 7053023 ~ 7053324 (+)
G71810 NA non-coding downstream 537263 7057734 ~ 7058275 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 552942 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 831087 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 1004323 5499908 ~ 5505638 (+)
G71247 NA other upstream 1529950 4956298 ~ 4980011 (+)
G71682 LOC108430946,LOC108416517 other downstream 5170 6525641 ~ 6538794 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 361116 6881587 ~ 6885541 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 2348657 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 2622428 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 3448035 9968506 ~ 9970042 (+)

Expression


Co-expression Network