CI01000009_06237366_06242607


Basic Information

Item Value
gene id CI01000009_06237366_06242607
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 6237158 ~ 6242627 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_06237366_06242607.mRNA
AGCAGCCAAACGTGGCCGTAATGTTTCACAACCTGACGAAACTCCGGACACTGATCCTGGCGAACTGCAGATTCTTCTTTCTGGATGGAAGTCTGACCAAAGATTTAAAGGCACTGATAGGTCTAGTGCTCATTCTAAAAGACAACGTCAATGTCCTTCAAAACTTGGTGGAACATCTCACTAGTTTGAAATACCTCTATCTTCAGGGCTTGGGTCTGTACTGCAGTTGTGATAATGCGTGGGTGGTCTCATGGGTGAAGGACAACAGTAAGGTGCAGGTTGACATGTTCAACCCCACCATGAAAGAACTGCAGTGTTTGAGTGACAATGGAATTGACCACCTCAACTTTATTGGTTATGCTAAGGAGAACTGCTCATTTGAAATCAAATTTGTGTTCTTTGCCTCCACCTCTGCATTTTTGTGTATTTTTATTATTGTGGTACTGTCATATAAGTTTGCAGGCCAATACATTGCGCCTTTCTATCACATCGCCAGTGGATGGTTCAGAGAGGCTTCGCGTGTGAACGAGGCGCGGCCCTCCGTTTTTGTGTCTCTGTCTGCACAGTCGGGACTTTCAGTTGGAGAAGACATTGTGGAAAACATCACAGACAGCATCTACGCAAGTCGTCAGACTCTTTGTCTCGTCAGTCGCAACTACCTCGGTAGCAACTGGTGTTCTTTGGAGATGCAGCTGGCCACCTACAGGCTCCAGGTAGAACACAGTCACATTCTTATCCTGGTCTTCCTAAAAATGATTCCGTCTCGCTTGCTATCCTCCCATCATAGACTGGCCCGGCTGGTAAAAACTAGAACCTATCTAGACTGGCCACAGGACCCAGAGATGCAAGAGGCATTCTGGGACAGGTTATGGTGTAAACTCAGCTCTAATAAAGCCAACTAGACTTTGTTTCTGTACATTGTAAAGTTGATTAAACAATTGCAAAGTGAGCAAAGTTCAATCAATATGACAGCTAATGGAAAAATGTTTATTTTTTTTATTTTTTTATTTTTTACCTCAACTGGCAAATGGATGAGAAAAATTAACTTTAAATATATTTAGCCTACATGTAATGTCCATGTTGGATTTACTTTTTTATATGCTTAATAAA

Function

NR:

description
Toll-like receptor 20a

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_06237366_06242607.mRNA True 1110 mRNA 0.42 2 6237158 6242627

Neighbor

gene id symbol gene type direction distance location
CI01000009_06228655_06235149 NA coding downstream 541 6227678 ~ 6236617 (-)
CI01000009_06214501_06218695 TLR20.2, TLR20F coding downstream 18326 6214295 ~ 6218832 (-)
CI01000009_06124385_06127298 NA coding downstream 108580 6123786 ~ 6128578 (-)
CI01000009_06072320_06072613 NA coding downstream 162776 6072173 ~ 6074382 (-)
CI01000009_06046712_06060022 NA coding downstream 176716 6045874 ~ 6060442 (-)
CI01000009_06246303_06248176 SLC10A2 coding upstream 2943 6245570 ~ 6248176 (-)
CI01000009_06250463_06251001 NA coding upstream 7659 6250286 ~ 6251001 (-)
CI01000009_06253421_06255264 NA coding upstream 10794 6253421 ~ 6255946 (-)
CI01000009_06891877_06908223 EFNB2A, EFNB2 coding upstream 648614 6891241 ~ 6908223 (-)
CI01000009_06913437_06917631 NA coding upstream 669843 6912470 ~ 6917631 (-)
G54137 NA non-coding downstream 32359 6204411 ~ 6204799 (-)
G54077 NA non-coding downstream 195491 6041458 ~ 6041667 (-)
G54068 NA non-coding downstream 214331 6022613 ~ 6022827 (-)
G54065 NA non-coding downstream 217802 6019046 ~ 6019356 (-)
G54156 NA non-coding upstream 223347 6465974 ~ 6530279 (-)
G54387 NA non-coding upstream 292467 6535094 ~ 6535317 (-)
G54411 NA non-coding upstream 326998 6569625 ~ 6569834 (-)
G54417 NA non-coding upstream 331283 6573910 ~ 6574168 (-)
G54488 NA non-coding upstream 390174 6632801 ~ 6633000 (-)
G53515 NA other downstream 731910 5502395 ~ 5505248 (-)
G52828 NA other downstream 2005689 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 2975201 3261038 ~ 3262843 (-)
CI01000009_02885473_02893975 NA other downstream 3337751 2883688 ~ 2893975 (-)
G52410 NA other downstream 3674625 2551724 ~ 2562533 (-)
G55814 NA other upstream 2183194 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 2615525 8856310 ~ 8860563 (-)
G59097 NA other upstream 6045590 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 7732761 13975099 ~ 13978614 (-)
G59490 NA other upstream 7790937 14033564 ~ 14037873 (-)

Expression


Co-expression Network