LOC103026234


Basic Information

Item Value
gene id LOC103026234
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6605304 ~ 6633875 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672027.1
GCCCTCCTACACTCACTGGGAGCCTCATTATCCCAGTAAAGCACAGCACTCCACAGTTACTGGTGTATTTATCTGTCTGAGacccacacacagagagaatGGTGGCAGTTAGAGGGGTAGCTAAGGCTTTAGCTTCTCGTTGGTCTATGGGAGGGTCTTTTAAGGCAAAGGTCAGCAGGAGGTTGACCTCCAAACTGTTTCCTACCCAATATAAGACGCAGGCAGTTTCGGATGGGGagtTGAACATGTCCAGGTTGTCTGGTACAGGCAGCAGCCCCAGTCTAAACGGCAGCTCTTCTGGAGGCGCGGGTCTTCCTGGAGCGGACGGACCGGCCAGCAGGGTGGTTAGCTGGGCTGTGTGCTTCGAGCGGCTGCTGGAGGACCCAGTTGGAGTTCGTTACTTCACAGCTTTCCTCAAATCAGAAGTGAGTGATGAGAACATCCTCTTCTGGCAGGCCTGTGAGAAGTTCCAGAAGATTCCAGCCACTAATCTGGATGAGCTGAAGAGGGAGGCTCGCTCCATCTatgatctgtatctgtctgaAGCTTCCTTCAGTGCTGTGAACATAGACGACACGGCCCGCACTGCTGAGAGCGACCTGGAGAAACCCACACCCGACATGTTCAGCAAAGCACAGCAACAGATCTTTAAGCTGATGAAGTTTGATAGCTACGCGCGGTTCGTGCGCTCTCCGCTCTATCAGAActgcatgctggccagtgtggAGGGACGGCCGCTGCCCGACCTCCAGCCCCAGAACAGGGGCTCCAGAGAGTGCATCACATCCAACAACAATGACCGGAAGAGCATGGAAGTGAATGTATCTTTACTGGAtagcaaagcaaacaaaaagaagaggagagaagTGGAGAAGAGAGGATCATGGGGAGCGGACGTGTCGTACAGGCGGGTGACCGTGTCCAGACAAGAGTCTCAGATCTCAGTCAAGTCCAACAGCAGTGTAGAGCTGGGCTCCCTCTCCAGCAGATTTgagAATGGCAGTTCGAGTCCTGTAGGCTCAGATCCGGACTCCGCAGTCCGAGCGGATAAGTACTGCTGTGTGTATCTACCTGACGGCACGGCGAGCCTGGCTCCGGCCCGGGCTGGTCTGTCCCTGCGGGAGATGCTGAGCGGCCTCTGTGAGAAGAGAGGATTCCCTCTGAAAGACGTCATCATCTACCTCCAGGGCATAGACAAGCCTCTCTCTTTAGACCAGGACAGTTCTATACTCCGGGATCAGCAAGTCCACCTGGAACTCAAAGTGACATTTACGCTGGAGGTCGTGTTCACAGGGAAGACATCAGGAATCATGGCAAAGTCTAGTAAAACTGTGGGAGACGCTATCACGCCTTTTCTCCAGAAACACAACCTCCGACCGCAGGACGTTGTCGTCActatgAATGGATCAAAAGAACCGTTAAACTTGAGCACCAGCGTCTTACGTCTGGCCAACAAGACCCTCTGTCTGGACCGAGTCAAAAATGCTGGTGAGGTGAGAACAGGTCCAGCTCCAGACGTGGCCAGAACGAGTGCCAAGCCCAGAAGAATGCATGAAATGGATGGTCTGGTGGAGATGCTGAACCGAGCTCAGTGCAGTAGGGTGGATGACCAGCGTGGTTTACTGACCAAAGAGCAGCTGGAGCTGCCCCAGTTCCTCCAGCTCCCAGACGAGCAGAAAGAAGCAAAAAAACCCTCTGAGAATACGGACTGTGGTAACCAatcaggagaaaaagagaaacggGGCATTAATGGAGGTCAaagcataaacaaacagaagagTGAAGAAGAATGCCAGAAGGGGACATCATTGTGAGAGAATGTGCGTGTGTATGATTGTGTTGCACttttgtatattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgagagagaaagacatacaATATTACATACAATGTTTTTCACCAGCTGTCAAAAAGAGATCTATCATTAAAGACTGTGAACTGCCTTCTAATACTGTATTATCTTTTAAACGTTTAAACAGGAGGTTTTTCAAATATAGCTCTTCTTCACTGTGCTTTACTAATCTGtcatttttataaagaaaaaaagactacATGCAGAGAAGTCTCTgtagtgtgtatttatttttgtattgtgtgGAATGTTTTACTCTTATGATCAAGAATGAGAAAGCTTTTtcctatatttattatttagaacaTTTGATACACTTACACATGCCTTATGATGATTTGCATATGTTGCTCACTTATGAATTTGTTTCACTTGCATGAATTTGTTGTATTGAAAAGCatgagctgtgtttttttttaatgattttgtggtttttgttttgtgtaattTTGCCTTTGCTCTTATGGTGTAATATTGAAATATAGTTATGTATACTCCTGTTAA
>XM_022672028.1
CAGTGGAGGTCCCTGCCCTGACTTGTGGTTGTCAGGGCTGAGTCGGGGCAGGTGTAGAGGCAGTGTAGAGGCGCAGTGTTCATGCAGTGCTGTGGAGTTACTCAACAAGGTCAAGAAAGAGAGGTTTTTAGTCAGAGTAACCGCTTCCCCTTGCggtgtgttgctatggtaagaCTTCCCTTTGAAACAGGAAATGACACGGAGTGCTAAGTAATGGGGCGTGAAGTAATATTGGCATAGGGTGTGCTTGTTTTCGGCGTGACATCCTCGTCCTCCGCTGGATCGATCTCGCGCTGATGTAGTTATGTCCAGCAAGATGAAGACGCTGGCAGTGCCCACTGGTCATCTGACGCAGGCAGTTTCGGATGGGGagtTGAACATGTCCAGGTTGTCTGGTACAGGCAGCAGCCCCAGTCTAAACGGCAGCTCTTCTGGAGGCGCGGGTCTTCCTGGAGCGGACGGACCGGCCAGCAGGGTGGTTAGCTGGGCTGTGTGCTTCGAGCGGCTGCTGGAGGACCCAGTTGGAGTTCGTTACTTCACAGCTTTCCTCAAATCAGAAGTGAGTGATGAGAACATCCTCTTCTGGCAGGCCTGTGAGAAGTTCCAGAAGATTCCAGCCACTAATCTGGATGAGCTGAAGAGGGAGGCTCGCTCCATCTatgatctgtatctgtctgaAGCTTCCTTCAGTGCTGTGAACATAGACGACACGGCCCGCACTGCTGAGAGCGACCTGGAGAAACCCACACCCGACATGTTCAGCAAAGCACAGCAACAGATCTTTAAGCTGATGAAGTTTGATAGCTACGCGCGGTTCGTGCGCTCTCCGCTCTATCAGAActgcatgctggccagtgtggAGGGACGGCCGCTGCCCGACCTCCAGCCCCAGAACAGGGGCTCCAGAGAGTGCATCACATCCAACAACAATGACCGGAAGAGCATGGAAGTGAATGTATCTTTACTGGAtagcaaagcaaacaaaaagaagaggagagaagTGGAGAAGAGAGGATCATGGGGAGCGGACGTGTCGTACAGGCGGGTGACCGTGTCCAGACAAGAGTCTCAGATCTCAGTCAAGTCCAACAGCAGTGTAGAGCTGGGCTCCCTCTCCAGCAGATTTgagAATGGCAGTTCGAGTCCTGTAGGCTCAGATCCGGACTCCGCAGTCCGAGCGGATAAGTACTGCTGTGTGTATCTACCTGACGGCACGGCGAGCCTGGCTCCGGCCCGGGCTGGTCTGTCCCTGCGGGAGATGCTGAGCGGCCTCTGTGAGAAGAGAGGATTCCCTCTGAAAGACGTCATCATCTACCTCCAGGGCATAGACAAGCCTCTCTCTTTAGACCAGGACAGTTCTATACTCCGGGATCAGCAAGTCCACCTGGAACTCAAAGTGACATTTACGCTGGAGGTCGTGTTCACAGGGAAGACATCAGGAATCATGGCAAAGTCTAGTAAAACTGTGGGAGACGCTATCACGCCTTTTCTCCAGAAACACAACCTCCGACCGCAGGACGTTGTCGTCActatgAATGGATCAAAAGAACCGTTAAACTTGAGCACCAGCGTCTTACGTCTGGCCAACAAGACCCTCTGTCTGGACCGAGTCAAAAATGCTGGTGAGGTGAGAACAGGTCCAGCTCCAGACGTGGCCAGAACGAGTGCCAAGCCCAGAAGAATGCATGAAATGGATGGTCTGGTGGAGATGCTGAACCGAGCTCAGTGCAGTAGGGTGGATGACCAGCGTGGTTTACTGACCAAAGAGCAGCTGGAGCTGCCCCAGTTCCTCCAGCTCCCAGACGAGCAGAAAGAAGCAAAAAAACCCTCTGAGAATACGGACTGTGGTAACCAatcaggagaaaaagagaaacggGGCATTAATGGAGGTCAaagcataaacaaacagaagagTGAAGAAGAATGCCAGAAGGGGACATCATTGTGAGAGAATGTGCGTGTGTATGATTGTGTTGCACttttgtatattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgagagagaaagacatacaATATTACATACAATGTTTTTCACCAGCTGTCAAAAAGAGATCTATCATTAAAGACTGTGAACTGCCTTCTAATACTGTATTATCTTTTAAACGTTTAAACAGGAGGTTTTTCAAATATAGCTCTTCTTCACTGTGCTTTACTAATCTGtcatttttataaagaaaaaaagactacATGCAGAGAAGTCTCTgtagtgtgtatttatttttgtattgtgtgGAATGTTTTACTCTTATGATCAAGAATGAGAAAGCTTTTtcctatatttattatttagaacaTTTGATACACTTACACATGCCTTATGATGATTTGCATATGTTGCTCACTTATGAATTTGTTTCACTTGCATGAATTTGTTGTATTGAAAAGCatgagctgtgtttttttttaatgattttgtggtttttgttttgtgtaattTTGCCTTTGCTCTTATGGTGTAATATTGAAATATAGTTATGTATACTCCTGTTAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG:

id description
K17706 RGS14; regulator of G-protein signaling 14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672027.1 False 2387 mRNA 0.48 14 6605304 6633875
XM_022672028.1 True 2521 mRNA 0.48 14 6608340 6633875

Neighbor

gene id symbol gene type direction distance location
LOC103027224 LOC103027224,LOC108430945,LOC108274535,LOC107715168,LOC107678618,LOC103354395 coding upstream 45569 6541416 ~ 6559735 (+)
LOC103042719 rbm22,LOC108430993,LOC102796909,LOC107758467 coding upstream 84833 6509961 ~ 6520471 (+)
LOC103043030 LOC108430994,LOC108274927 coding upstream 96286 6472178 ~ 6509018 (+)
LOC103028894 stox2b,LOC108430995,LOC108274926,LOC107680916,LOC107758540 coding upstream 142854 6374549 ~ 6462450 (+)
LOC103029834 LOC108430996 coding upstream 232941 6353639 ~ 6372363 (+)
LOC103042411 LOC108430989 coding downstream 44721 6678596 ~ 6719028 (+)
bnip1 bnip1,bnip1a,LOC108430943,LOC107598374,LOC107756689,LOC105024416 coding downstream 299515 6933390 ~ 6940362 (+)
LOC103023840 cpeb4,LOC108430986 coding downstream 505161 7139036 ~ 7173548 (+)
LOC103023202 NA coding downstream 572602 7206477 ~ 7212496 (+)
LOC103027052 LOC108430977 coding downstream 978837 7612712 ~ 7652490 (+)
G71628 NA non-coding upstream 259589 6345234 ~ 6345715 (+)
G71613 NA non-coding upstream 447886 6153881 ~ 6157418 (+)
G71611 NA non-coding upstream 518317 6086574 ~ 6086987 (+)
G71608 brd8,LOC107758534 non-coding upstream 568645 6032185 ~ 6036659 (+)
G71566 NA non-coding upstream 590922 6012222 ~ 6014382 (+)
LOC111193077 NA non-coding downstream 5791 6639666 ~ 6662003 (+)
G71747 adra2da,LOC108430987,LOC105904584 non-coding downstream 233173 6867048 ~ 6868404 (+)
G71787 NA non-coding downstream 238273 6872148 ~ 6872364 (+)
G71808 NA non-coding downstream 419148 7053023 ~ 7053324 (+)
G71810 NA non-coding downstream 423859 7057734 ~ 7058275 (+)
G71682 LOC108430946,LOC108416517 other upstream 66510 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 648285 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 926430 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 1099666 5499908 ~ 5505638 (+)
G71249 NA other upstream 1637397 4963702 ~ 4967907 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 247712 6881587 ~ 6885541 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 2235253 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 2509024 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 3334631 9968506 ~ 9970042 (+)
G72621 NA other downstream 3444704 10078579 ~ 10082140 (+)

Expression


Co-expression Network