LOC103042411 (LOC108430989)


Basic Information

Item Value
gene id LOC103042411
gene name LOC108430989
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6678596 ~ 6719028 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672030.1
AATTCCCTTGGGAGTACGGAGTGTTATCTCTGAACATCTGTCACCTGCAGAGCAGACAATTAAACATCAGCTGTTTCTCAGGTCCTTAAGGAAACAGCATGTCCTCCCGGCCAATCAGAATCATCTCATCTAACCCAGGACAAGTGGGCAGCTACAATgGGATGGATCTCCACAGCTCCAACTCCacagagtgtgtagagtgtgacATGGGCTCCACCGTGGATCTCATCTGCAGCTGCTCTCATGCAGACCCCAACAGACTCGGCTCTACATCCCACGATGCCTGGGAAGGAGGAAGACCTCCAAAAGTacaagTGCTTCCTAATGCTCCCACtggagaaaaggaaaaaatgaaatCGCTCTTCATCAGTGTGATGAAAATTCCAGCGCTCTTCTTCCTCCTGTATTGCTTCGTCTGCTCCCTGGACACATTGAGCTCTGCATTTCAGCTTGCTGGGGGTAAGGTGGCGGGAGATATCTTCCAAGACAATGCGATTCTCTCTAATCCAGTGGCTGGGCTGGTGGTTGGAATTCTGGTCACTGTGCTCGTTCAGAGCTCCAGCACCTCCACATCCATCATCGTCAGCCTGGTCTCTTCCGGACtgttggAGGTGAAGTCTGCTGTTCCTATAATCATGGGTTCAAACATTGGCACTTCTGTTACCAACACCATTGTGGCTCTGATGCAGGCCGGAGAGAGGAACGAATTTAAACGGGCATTTGCTGGAGCTACCATTCATGACTGCTTTAACTGGTTATCTGTGTTGGTACTTTTGCCACTGGAGGTGGCCACTGGGCTGCTGAGCTTTCTGGCCCGGACTGTGGTCGGCAGCTTCCATCTGCAGAGCGGAGAGGAAGCACCAGAGCTGCTGAAGGTCATTACTGAGCCTGTTACCAAACTCATCATACAGCTGGATAAATCCGTGATAACAGGCCTCGCTTTGGGAGACGAGCGGATGAGGAACCGCAGCCTGGTGAAAGTGTGGTGCGGAAGCAGTGGCCTCATGCCATCTGTGAATGATTCTCAGAATTGCTCCTCTGGGTTTGATTGCTGGAAGGACGCTGACCACAGCAGTGCAGAGAGATGCTGGCATCTGTTTGCGAACACACACATGTCAGACCTGACTGTGGGGTTAATTCTGCTGGGTGTGTCTCTGCTGGTGCTGTGCTCCTGTCTGATCCTCATCGTCAAAGTCCTCAACTCGGTCCTCAAAGGACAAGTGGCCAAAGTCATTCAGCTCATCATTAACACAGATTTCCCCTACCCGTTCAGCTGGCTGGCAGGATATCTAGCCATGTTCATCGGAGCAGGAATGACGTTCTTAGTTCAGAGCAGTTCCGTCTTCACCTCTGCCATGACGCCACTTATTGGGCTTGGAGTGATCACACTGGAGAGGGCATACCCTTTAACACTGGGCTCCAACATCGGAACAACCACCACAGCCATCCTTGCCGCTCTGGCCAGTCCAGGAGACAAGCTGCCCTCTGCCTGCCAGATCGCTCTCTGCCACTTCTTCTTCAACGCGTTTGGGATTTTGCTGTGGTATCCGCTGCCCTTGACAAGATTACCCATTCGCATGGCCAGGGCGCTGGGCGAGCGGACGGCCAAGTACCGCTGGTTCGCCGTGCTCTACCTGCTGCTGTGCTTCCTGTTGCTTCCATCGCTCGTCTTCGGCCTGTCTCTCGCCGGCTGGCAGGCCATGGTGGGCGTGGGGGCACCTTTCGCCGGGGTTGCAACCTTCATCATCCTAGTGAACCTCCTGCAGACCCACAGCCCTCGCCACCTGCCCAGAAAACTGCGCAACTGGGACTTCCTGCCCACATGGATGCACTCCCTCAAACCTATGGACAAGCTCATCACCAGCACCACGGCCATGTGCTGCAGCCCTGCCCGGTCCCCTCCCACCACTGACCCAGAGGCCACCGGAGGACCTGACGCCACCGCGGTTAAGCCAGAATCAGTGGCGTCCAAGAGGAAAGCTCAACTAGCCTTCGACAACCCCATACTGTCCTATCAGGACGAGTCTCACACACAGCCACGAGTGTTCAAGCTGAAGGGTCTGGAGCGGTGCAATAGTACACCTCTGTAGAAAAGATAAATACCTCCAGTTACAGACCCACAGACTGTTGCCTGCTTACCAAAGTCAAAAAACGTCAACCATTGACATATTTCAGATCTGTGTGGACCTTTTAACACCTTGGTTTTAAAGCTGTGTATGTCCATGCCATCATGAGTACATTTGAGGGTACTGATGTCCATTCTTTGCCACATTTTGTAaagcaaaattattttattataaagtgtatGTACATTTTTCTAAACTAA

Function

NR:

description
PREDICTED: sodium-dependent phosphate transport protein 2A-like isoform X1

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006817 phosphate ion transport biological_process

KEGG:

id description
K14683 SLC34A, NPT, nptA; solute carrier family 34 (sodium-dependent phosphate cotransporter)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672030.1 True 2326 mRNA 0.52 13 6678596 6719028

Neighbor

gene id symbol gene type direction distance location
LOC103026234 NA coding upstream 44721 6605304 ~ 6633875 (+)
LOC103027224 LOC103027224,LOC108430945,LOC108274535,LOC107715168,LOC107678618,LOC103354395 coding upstream 118861 6541416 ~ 6559735 (+)
LOC103042719 rbm22,LOC108430993,LOC102796909,LOC107758467 coding upstream 158125 6509961 ~ 6520471 (+)
LOC103043030 LOC108430994,LOC108274927 coding upstream 169578 6472178 ~ 6509018 (+)
LOC103028894 stox2b,LOC108430995,LOC108274926,LOC107680916,LOC107758540 coding upstream 216146 6374549 ~ 6462450 (+)
bnip1 bnip1,bnip1a,LOC108430943,LOC107598374,LOC107756689,LOC105024416 coding downstream 214362 6933390 ~ 6940362 (+)
LOC103023840 cpeb4,LOC108430986 coding downstream 420008 7139036 ~ 7173548 (+)
LOC103023202 NA coding downstream 487449 7206477 ~ 7212496 (+)
LOC103027052 LOC108430977 coding downstream 893684 7612712 ~ 7652490 (+)
LOC103027348 LOC103027348,LOC108430938 coding downstream 952530 7671558 ~ 7674663 (+)
LOC111193077 NA non-coding upstream 16593 6639666 ~ 6662003 (+)
G71628 NA non-coding upstream 332881 6345234 ~ 6345715 (+)
G71613 NA non-coding upstream 521178 6153881 ~ 6157418 (+)
G71611 NA non-coding upstream 591609 6086574 ~ 6086987 (+)
G71608 brd8,LOC107758534 non-coding upstream 641937 6032185 ~ 6036659 (+)
G71747 adra2da,LOC108430987,LOC105904584 non-coding downstream 148020 6867048 ~ 6868404 (+)
G71787 NA non-coding downstream 153120 6872148 ~ 6872364 (+)
G71808 NA non-coding downstream 333995 7053023 ~ 7053324 (+)
G71810 NA non-coding downstream 338706 7057734 ~ 7058275 (+)
G71805 NA non-coding downstream 342664 7061692 ~ 7100725 (+)
G71682 LOC108430946,LOC108416517 other upstream 139802 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 721577 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 999722 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 1172958 5499908 ~ 5505638 (+)
G71249 NA other upstream 1710689 4963702 ~ 4967907 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 162559 6881587 ~ 6885541 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 2150100 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 2423871 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 3249478 9968506 ~ 9970042 (+)
G72621 NA other downstream 3359551 10078579 ~ 10082140 (+)

Expression


Co-expression Network