LOC103027052 (LOC108430977)


Basic Information

Item Value
gene id LOC103027052
gene name LOC108430977
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7612712 ~ 7652490 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672039.1
ATGGACAAAGGAGGTCTAAAGGACGTCATGAAGAGAGATGAGCGTCTAATCACCCTGAATTACAGCGACGGCCCAGCTGAGGGAGTTTTACAAAACGGAACACGCAGCACTATGTCTATCGCCTCCACTTCTCTAGTTCCTCCACCCAGCCCCTTGATGCAGCCTGTGACTGGGGACCTCCTAAATGGACTCAGCAGCTCCCCCACTCCGGAGGAGCTCACCACACCGGCCACACTGGACCTCTATATGGAAGATCTGGACATGAAAACAGTCGGGAGGGACCCGAGAGCCCAGCAGGCCTTCCAGCAGCAGTCGTCGCTGGGCTACTGCGGTGTGGGGGACAGCTTGTCACGGCTGGAGGCCAGCATTGCAGATCTCAGCAGCTCCTCTCCGTCTGTGGACTCTTTAATCGGAGGAGTGGATCCCAGCCTCTTCACACTGAAACATGAGGACTTCTCACCCATGGGCAAAGGGGATATAGATGTGGAGCCAGATCCGTTCGGGCCTATCGGAAAAGACATGGACTCGAGTACTCCGAAATTATTCAGCGAGAACACCCTGGACCTTCTGAATGATTTTGAGATTGAAACATCACCAGATTTCTATGTGGTAGATGAAGATTTCCCCCCATTGGGTGAGGACTCTCTACTGGGAGTCATTGGCCCAGAAAGGGACTTGAAGCCTGCAGCTTCTGTGAGTGACATCAATGGCACtagcaacagcagcaacaacatCAGCAGCAACAACGTCGGGAGTAACAGTGCAACCAGCTGTGCTTCTACCGGTCTGACTACCGCCAGCGCTCCCCTTGTGGTGAAGGTGGAGAAGGATCCAGTGCTCCAGCTCTGCACTCAAGGAGTGATCAAGCAGGAGAACACCGGTGGACGGAGCTTCTGTCAAATGGCGGGGAACGAACTGTCGAGCCCTCTTACTGCCCCATCGATCTCCATCTGTGGCGTCAGCACCTCCAGTGGGCAGAGCTACCGCTTCGGAAGTCCTGCCGCCACCAGCACCATCAGCATCCAGCAGAAAGATCAGAAgcccatttttaatgtttataccCCACAGCCCCTTGTTGGGGATGGCTGGGGAAGGAGTCTTGGGATACAGCAAAGGCCTGGGGATGGCTTCGCCAGCAACCAGAGCTTTACAACCAGCTATGCCAGcGGCACAAACAGGCCTGAGGCTACATCCACTGGCACAGGGAAATCCAGTGGCGCCACACACAAAATCTGCCTGGTGTGTTCAGACGAGGCGTCGGGCTGCCACTACGGTGTTCTGACCTGCGGCAGCTGCAAGGTCTTCTTCAAAAGAGCTGTGGAAGGATGGCGATCGAGACAAAACACAGATGGGCAACACAACTACCTGTGTGCTGGGAGGAATGACTGCATCATCGATAAGATCCGCCGGAAGAACTGTCCGGCCTGCCGCTTCCGCAAGTGTCTCATGGCCGGGATGAACCTAGAGgCACGCAAAGTCAAGAAACTAAAGGGCTTAAAGGGTGTGCAGCAGCCAAACGCAGCTGACCTGAGCCCAGCTCCAGTGCAGGAGGTGCGGGCGCTGGTGCCCAAGGCCATGCCACAGCTCGTGCCCACCATGCTGTCCCTGCTCAAAGCCATCGAGCCAGAGACCATTTATGCTGGATACGACAGCACACTGACCGACACATCCACTCGCCTAATGACCACCCTCAACAGGCTGGGCGGCCGCCAGTTCGTCTCCGCAGTCAAGTGGGCCAAAACTCTGCCAGGTTTTAGGAATCTTCACCTGGATGATCAGATGACTCTACTGCAGTCCTCCTGGCTCTTCCTCATGTCCTTCGGCCTGGGCTGGAGGTCCTACCAGCAGTGCAATGGAAACATGCTCTGCTTTGCTCCAGATCTGGTGATCAATGAGGAGAGGATGAAACTGCCCTACATGGGTGATCAGTGTGCACAGATGCTGAAGATCTCCAATGAGTTTGTCAGGCTGCAGGTGTCCAATGAGGAATACCTGTGCATGAAGgtcctgctgctgctcagcACCGTGCCAAAGGACGGTCTGAAGAGCCAGGCTGTGTTCGATGAGATCAGGATGTCCTACATTAAAGAACTGGGCAAAGCCATTGTCAGGAGAGAGGAGAACTCCAGCCAGAACTGGCAGCGATTTTACCAGCTCACTAAGCTACTCGACTCCATGCACGATATGGTGGGTGGACTGATGAATTTCTGCTTCTACACATTTGTGAACAAGTCTCTGAGCGTGGAGTTCCCCGAGATGCTCGCCGAAATCATCAGCAACCAATTACCAAAAATAAAAGCCGGGAGTGTCAAACCGCTGCTCTTTCACCAGAAATGAAACGAAAAACACACCCTTCCTCCAGCAACGGGACACCATGCCTTAAAAATACACCCCATCACCAACCGTTCCTCACTGAACATgcagagggacagagagacacagtaaaaagaatggaaagagagagaatgagagagtgagtgaatgaacgAATGagtaaatgaaagaaagaaagaaagagatggaaagagactAACTGAGGTCATTGTGGGACAATGGGACAGTGGATGGATGGGGAACAGTATGCAACCAACCCAATCTaatccaacccaacccaacacagAACCACGGTGGACAAGTGTTGACGGTGTTTAAAGACGGGTAAAGAAAGCATAATAGATCAGACAATTAAAAGCtaatacagacagaaagatacTGTATTAACTATACAGTAAGATAACTATGAAATTCTatggtggaaaaaaaattataccatAAATGTTGTCTCAGGTGTTTGATTCTCAACATTAAAATAAGTAGATAAACTAGCTATTTCTCAAAAATCTACGTTTGTATAGGTTTCAcataccttttttttgtttgtttgttttattaaattttcttttccttttgttttcttttttttttttttttgaacaaaGGAAACACCTTAGCACTTACTGTCTCAGATTATACAGTTCTATCTACCTATTATAGTAGGTTTTAGATTTTCAGAACTTCTCATTTTTATGTTGGTgagatataataatacaaagaGTTTATTACTTCATCTGATGATCTCATACTGATACACACGTTTTGTTTGAAATAATCATTTCAataatatgtacagtaaaatGGCTTTGGCGATGTAAGAAGTCGAACAGAGAAAATTTAATACTTACACATAACATATCTTTACTATTTTCAAGCTCACGTTTTTTGCTAACCTCTGTCGGAATTACACGATTATAGCAAAAGGGAAAAtatgtgcctttttttttagctcctcccattttAGCCATCTTCTTCTGTAACTGTGCGTACTGAGCGTTTTTGCATCCATCATGTTAGATAttgtatttgattgtatttttataCCCACTTGCACTGGCGATTTTCCTTTTTACCATGGCCGCCGTGTATTTGTTCTTGGCAGCTCCATGATTGCGTAgtgttaatttttaaaaagtggtcCTTATTGCTTTGGTATTGAAATTAGGAGTCTAATCTGTAACCCGCATCCTTTCCccattttgttgttgttctatAGAACTTTAGACTAAAATGCTGTTCGAGCACCTTCACTCCTattattaaatgctttaaagaGAACGAGAAAAGTGAGACGGAAGACGCTGGTGTTTACGcatttttagtctttttaatTCGTTGAGTTGAATTGAATGGAATAGGAATGAGTTATGAGGCTATGTGAATCATGGTTCTGATCGGAACGCAGTTCGATTTGGTCTTTTTGTTCTTGTGTaactgtgtatgtttgtgtgtgtgtgtgtgttttctccttGCTCACAATCATTCATCTATACAGCCATAACCATAAGCATAAGCATAGCATCAGGTACCAGTTTCGTTTTCATCACTGTAGCCAGACTAGTTAGTACTAGAAAAGCAATGCCAGAAGCCACGGTTCCCCAAAAGCCAAGAATACCCTCCACCCTACATCCTACACACTGTCCATTAACAAGAAGAATggatattattactatattattaataCTGTGCAATCAATTCTCACATTTACGCTCCAAAACATACAGAAATAggtatagaaatagaaaaaaataaa

Function

NR:

description
PREDICTED: glucocorticoid receptor-like isoform X4

GO:

id name namespace
GO:0071548 response to dexamethasone biological_process
GO:0051414 response to cortisol biological_process
GO:0070509 calcium ion import biological_process
GO:0036367 light adaption biological_process
GO:0043402 glucocorticoid mediated signaling pathway biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0042921 glucocorticoid receptor signaling pathway biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004883 glucocorticoid receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672039.1 True 4087 mRNA 0.46 10 7612712 7652490

Neighbor

gene id symbol gene type direction distance location
LOC103023202 NA coding upstream 400216 7206477 ~ 7212496 (+)
LOC103023840 cpeb4,LOC108430986 coding upstream 439164 7139036 ~ 7173548 (+)
bnip1 bnip1,bnip1a,LOC108430943,LOC107598374,LOC107756689,LOC105024416 coding upstream 672350 6933390 ~ 6940362 (+)
LOC103042411 LOC108430989 coding upstream 893684 6678596 ~ 6719028 (+)
LOC103026234 NA coding upstream 978837 6605304 ~ 6633875 (+)
LOC103027348 LOC103027348,LOC108430938 coding downstream 19068 7671558 ~ 7674663 (+)
mars2 mars2 coding downstream 67390 7719880 ~ 7725813 (+)
spock1 spock1,LOC107747099,LOC107655663 coding downstream 787647 8440137 ~ 8641348 (+)
LOC103031395 etf1,LOC108430956,LOC108275025 coding downstream 1022359 8674849 ~ 8687469 (+)
LOC103028966 fbxw11a,LOC108430955,LOC105893085,LOC108275024,LOC107655672,LOC107588312,LOC107754486,LOC107747095 coding downstream 1039460 8691950 ~ 8726635 (+)
G71917 NA non-coding upstream 84921 7527329 ~ 7527791 (+)
G71910 NA non-coding upstream 114442 7497778 ~ 7498270 (+)
G71895 NA non-coding upstream 126302 7486170 ~ 7486410 (+)
G71894 NA non-coding upstream 128561 7483663 ~ 7484151 (+)
G71892 NA non-coding upstream 134988 7477466 ~ 7477724 (+)
G71931 NA non-coding downstream 23053 7675543 ~ 7675776 (+)
G71932 ndfip1,LOC103026574,LOC108430976,LOC107756695,LOC107553337,LOC107677723,LOC107741079,LOC108274678 non-coding downstream 23902 7676392 ~ 7685337 (+)
G71936 hspa4,LOC108430974,LOC108274676,LOC105011245,LOC100380717 non-coding downstream 47392 7699882 ~ 7718943 (+)
G71944 med12 non-coding downstream 80952 7733442 ~ 7736160 (+)
G71985 NA non-coding downstream 121351 7773841 ~ 7775533 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 727171 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 1073918 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 1655693 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 1933838 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 2107074 5499908 ~ 5505638 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 1216638 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 1490409 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 2316016 9968506 ~ 9970042 (+)
G72621 NA other downstream 2426089 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 2620429 10272919 ~ 10626964 (+)

Expression


Co-expression Network