spock1 (spock1,LOC107747099,LOC107655663)


Basic Information

Item Value
gene id spock1
gene name spock1,LOC107747099,LOC107655663
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8440137 ~ 8641348 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672043.1
AAAGAACGtactcattctctttctttctctctctctctgtaggatGATTACTTCAGGACCTGGAGCCCCAATAAAGCACAAGATAAAGATTCAGAGACTAATCCAAGGAGACACGGGGAGCCAGGTTCTAAACCACACCCACCAGCTCAGCCTAAATGGAAGAGTGAGGATGgTTTGGACATCGCTAAAGATCCCTGTATGAAGGTGCACTGTCCTCCTCACAAAGTATGTGTGAGCCACGACCTCCAGACAGCTATCTGCACCAATCACAAACCCCCACAGCACAGtgtcAAGCCAAGGAAAGGTAGTGTTCCCCACAAGCACTGGATCGGAGCAGTGACTCATGGGAAATGTAGGCCATGTCCTGTTGCGCATCCCAGTCCAATGTGCGGCTCTGATGGGCATACCTATTCCTCAAAGTGTAAGCTGGAGTTCCAGGCCTGCATTTCAAAAAAGAGCATCTCAGTCAAGTGTGAGGGACCGTGCCCCTGCCTGCCTGGACAGGAAGTCATCAAACCGCACAGTGAAAAGAAAgCCTGCAGTGATGCTGATTTGAGGAGTTTGGCCTCCAGACTAAAGGACTGGTTTGGTGTGTTGCATCTGGACGCCAACAGAGATCTGAAGACTTCTGTCAATGACAACGCTCAAGGACGCTTTGACACCAGCATTCTGCCCATCTGTAAGGACTCTCTTGGTTGGATGTTTAACAAACTGGATATGAATTATGACCTCTTACTCGACCAGTCAGAGCTCAGCGCCATCTACCTGGACAAATATGAGCTGTGCATGCGGCCGCTCTTCAACTCCTGCGATTCTTTTAAAGACGGAAAGCTCTCCAACAACGAGTGGTGCTACTGCTTCCAGAAACccgaggGTCTGCCTTGTCAGAACGAAATGAACAGGATTCATGGTCAAGGCCGACGGAAGGCTCTCATAGgAGCGTATATCCCCCGCTGTACAGAAGATGGCTACTTTAAGGCTACACAGTGTCATGGCAGTACAGGGCAGTGCTGGTGTGTTGACAAATATGGCAATGAGATCGCAGGGTCCAGAAAACAAGGCAACCCCATCTGCGAAGAAGATCAGGAGACTTCAGGGGACTTTGGCAGCGGAGGAGCAGTGATTCTCCTCgatgatcaagaggaagaggaggcggAGCCTCCGCAGCACGGCCGGCGCAGACAGAAGGAGAAGCGTGGCCGGCTCCACCCCCGCGGGGCCATCGAGGACGACgaagatgaagaagatgatAAAGAGGATGAAATGGGCTATGTCTGGTAGCTCCGACCCTCTCATCTTCTGCTGGCCAACCAGGGACCCCCATTGAAATGCAAAGTTCTGAAGCCATTCCAAATCCACAAACCTGGACCTGCCCCTTCTGAATATAAACTCCGCCTCTACACCCATCTGACCCCACCCACTAGAGCTCATTTTATGGCCTGCTTTACCATCGTATttgcatttcctttttttttctacccTTCTTGTCTGACATCTATTGTCATTTTACTTCTCTCAGCATCTACCTGTTTCCTTTCAACACGACCAGTCGAAAACAGTTGAAATCAGCAGAGACTCATAACAatgttattaaatatgttattaatCAACTGTTATCATCCACACTTCTACTAAAGCAGAGTCCCTCCCTCTTTGTACCATTTGGAAATGGCGACCACTTCCTTTCATATGCtccaacctctctctctctctctctctctctctctctttgtctttctctatctctctctctctctctctctctctctctctcattccctctTTCTTATTTCCACTGGTTTGTTACACAGGAATCTGTAGCCCTCCTTTTGTTCTCTGTCGAGCTTCTAGTGTGAAAATCTGAAGCTGCCCGAGAGCCATGGCTGtaaatatttctctttctcttcagaCAGATGAGGTACCGTGTTCTGTCCTcctctgtctccctctgtcCCAGAGTCTCCCACCCAGGCCTTCAAGAAGGTTCCTGAATGGTTTAGAAGGTTGCTTCAAGGGGAGATTCTAGTGGAGAGATAATCTATTTAAGACGATGAAGTGAAAGATCTCTAGAGGGATCTGGAGCATTCTGGAAAGTCCTAGAGAGATTTTCAGTGGGTCTATGCATGTTCCCTGCAGCACAGGTGAGAAGATTGTGTTTTTTGGCTTGGTTGGtagttgataaaaaaaagagccaatgagaataagaagctttttattttgtgaTAACGCTGTTGTTCGCTGATGCTCTGCTTTGTTCTGTCTCTGGATGGTTGCCACAGTGCTACCAAGAGTCTGtagacctgtgtgtgtgtgttgtgtgtgtgttgtgtgtgtcctTCAAAAAACCCGCTAAGCCCCAGATGCATCTAAAAATTCACAACTTCTTGcaatgcttatttaaaaaaaatatctcagTGCTAAGATTATTATCATACGGCTGAGGGTTGAAAGTATATGTGTGTTATTTTGTGTAGTCCAGGTCAGACCATCAGGCCATTCAgtcagttttttctttcttcacagTTCCGCTAAAAGCTCTCTCTCGCAAACAGGGGAGAAAACTCTTTCCTGTTCCTGCAATGTCATGGTGTGTCCTTTTGTTAACCTGGCTGCAAAGCTTTTGTTGAAGAAATCACTCTTATCAAAGTGGAAGCAGCCACCATTTTATTCTGACAGTTACTTGAGGAAAATGGAAGCTGCaggtgctttttttcttttcactgtCCTGCAATGTAACAGCTGTGTGGGCAGAACATGAAGCTGTATTCTTCTCTATAGGAACGTttcctttttgtgtttttttttttttagtgtacattcattctatatatactatatccACATATCCAACTGCCACCTAAAGTATATTAAAAGACTGAGAATACT

Function

symbol description
spock1 Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region. Orthologous to human SPOCK1 (SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1).

NR:

description
PREDICTED: testican-1 isoform X1

GO: NA

KEGG:

id description
K08136 SPOCK; testican

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672043.1 True 2886 mRNA 0.46 10 8440137 8641348

Neighbor

gene id symbol gene type direction distance location
mars2 mars2 coding upstream 714324 7719880 ~ 7725813 (+)
LOC103027348 LOC103027348,LOC108430938 coding upstream 765474 7671558 ~ 7674663 (+)
LOC103027052 LOC108430977 coding upstream 787647 7612712 ~ 7652490 (+)
LOC103023202 NA coding upstream 1227641 7206477 ~ 7212496 (+)
LOC103023840 cpeb4,LOC108430986 coding upstream 1266589 7139036 ~ 7173548 (+)
LOC103031395 etf1,LOC108430956,LOC108275025 coding downstream 33501 8674849 ~ 8687469 (+)
LOC103028966 fbxw11a,LOC108430955,LOC105893085,LOC108275024,LOC107655672,LOC107588312,LOC107754486,LOC107747095 coding downstream 50602 8691950 ~ 8726635 (+)
LOC103033931 si:ch73-233f7.1,LOC108430952,LOC107596359,LOC107588310,LOC107754489,LOC107660897,LOC108274507 coding downstream 168680 8810028 ~ 8819533 (+)
LOC103031822 LOC108430951,LOC108275060,LOC107754491,LOC107747094,LOC107596358,LOC107655671,LOC107660898,LOC108275059,LOC107754490 coding downstream 185166 8826514 ~ 8857516 (+)
LOC111193048 LOC101884096,LOC108430950,LOC108430926,LOC108430927,LOC107588388,LOC108275115,LOC107747118 coding downstream 220772 8862120 ~ 8868955 (+)
G72202 NA non-coding upstream 2042 8437870 ~ 8438095 (+)
G72192 NA non-coding upstream 19832 8420064 ~ 8420305 (+)
G72183 NA non-coding upstream 38659 8401246 ~ 8401478 (+)
G72175 NA non-coding upstream 47660 8392261 ~ 8392477 (+)
G72171 NA non-coding upstream 53381 8385675 ~ 8386756 (+)
LOC111193079 NA non-coding downstream 143224 8784572 ~ 8793176 (+)
G72278 NA non-coding downstream 448528 9089876 ~ 9090618 (+)
G72263 LOC108438833,LOC108438829,LOC108438834,LOC107588364,LOC107596372 non-coding downstream 501014 9142362 ~ 9151966 (+)
G72285 NA non-coding downstream 586167 9227515 ~ 9227886 (+)
G72305 NA non-coding downstream 950959 9592307 ~ 9639931 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 1554596 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 1901343 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 2483118 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 2761263 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 2934499 5499908 ~ 5505638 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 227780 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 501551 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 1327158 9968506 ~ 9970042 (+)
G72621 NA other downstream 1437231 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 1631571 10272919 ~ 10626964 (+)

Expression


Co-expression Network