LOC103031395 (etf1,LOC108430956,LOC108275025)


Basic Information

Item Value
gene id LOC103031395
gene name etf1,LOC108430956,LOC108275025
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8674849 ~ 8687469 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672044.1
CATGTGAGTCCCCTCTTTTTGCTCCACGCGCCGTCGGTAGGGACGGAACCGGCTGGGAGGCAACGTCACACCGCGGTCCGGCGAAAACAACGGAGAGGCGCGGCGGCGGCGGAGCGTGTGGCAGGTGCCGAAGCGATTAACTTACAGCAGGGAAGATGGCGGACGACCCGAGCGCCGCGGACAGGAACGTGGAGATCTGGAAAATTAAGAAGCTGATCAAGAGTTTGGAGGCGGCCAGAGGtaATGGGACCAGTATGATTTCATTGATCATACCTCCTAAAGATCAGATCTCCAGAGTAGCCAAGATGCTTGCTGACGAGTTTGGCACAGCCTCCAATATCAAAAGCAGAGTCAACAGACTGTCTGTGCTGGGAGCCATCACTTCAGTACAGCAGAGACTAAAACTCTACAACAAAGTGCCCCCTAATGGTCTCGTAGTGTACTGCGGCACCATTGTGACGGAAGAGGGCAAAGAGAAGAAAGTCAACATCGACTTTGAGCCTTTCAAACCCATCAATACCTCGCTGTATCTCTGTGACAACAAATTTCATACCGAAGCTCTGACAGCATTGTTGTCAGATGACAGTAAGTTTGGCTTCATCGTGATTGATGGAAGTGGTGCACTATTCGGGACCTTACAGGGCAACACTAGAGAAGTGCTGCACAAATTCACAGTGGACCTTCCCAAAAAACACGGTAGAGGAGGACAGTCTGCGCTGCGTTTTGCACGATTGAGAATGGAGAAGAGGCATAACTATGTGCGTAAAGTGGCAGAGACAGCAGTGCAGCTCTTTGTGTCCAATGATAAGGTCAACGTGGCTGGAATGGTTCTGGCTGGATCTGCAGACTTTAAAACTGAACTCAGCCAATCTGACATGTTTGATCCGAGGTTACAGGCGAAGGTTTTGAAGCTGGTGGACATCTCTTACGGTGGAGAGAATGGTTTCAATCAAGCCATTGAGCTGTCGGCTGAGGTCCTTTCAAACGTCAAATTCATTCAAGAGAAGAAGCTTATAGGTCGCTATTTTGATGAGATCAGTCAGGACACGGGAAAGTACTGTTTTGGTGTGGAGGACACGCTGAAGGCACTGGAGATGGGAGCAGTGGAGATCCTCATTGTTTACGAGAACCTGGACACCATGAGATACATCTTACGAGTACATGGGGCTGAGCTAAACGGATTAGAGAATGATGAGAAGACCATTTATTTGACACCTGAGCAAGAGAAGGACAAGTCTCACTTCACGGAcaaagagACGGGGCAGGAGCATGAACTGATCGAGTGTATGCCGCTGTTGGAGTGGTTTGCTAATAGTTACAAGAAATTTGGAGCCACGCTGGAAATAGTCACAGACAAGAGTCAGGAGGGTTCACAGTTTGTCAAGGGCTTTGGAGGAATTGGCGGTATCTTGCGGTACAGAGTGGATTTCCAAGGGATGGAATATCAGGGAGATGAAGATGAGTTTTTCGATTTGGATGACTACTAGGTAGTCGGAACTGAAATGGGAAGAGAACCGAAAAGAAAGAATGAACGAATGAAGAAATATGGAAAGAAATGCGTCTTTCTTttgcagtgagagtgtgtggacCCTAATTAACCACAAACCCACACctatacacatgcacacacatgcagacaatTTCAGATGCTGAAAAGGAGGAGTTAACGGTCAATCAAATGAAGGACTGAGCCTTCATCAATTAATGATTATGCCCCTGCCTTAGAGCACTCTGATTGGATAGGACTTTGCCTCATTTTGTTTAATCTCCTGTTCTCCTTCCCTACTGAATTTAAACGACAGCACGTGCCCAGGATGTAACTCTGCTCAGTCCAAGTCGCCTTTGGACTCACTCCTCttacacaaatatatttttctttatgtccctcccttctttttctcttgtcCTCCATCAACCCTTCCctacctctgtctctctgggtccttttgcatttctttttttcttttctttttttttttttttttactggcaactgctgctgctgtattttATGACagtgtgggatttttttttacctgggtTTCTGTAGCGAATGGGGGgacaaaaaagtattaaatttgCTTAAAACCAATATCCTTTCA

Function

symbol description
etf1 Enables sequence-specific mRNA binding activity and translation release factor activity. Involved in regulation of translational termination. Acts upstream of or within protein methylation and translational termination. Located in cytoplasm.

NR:

description
PREDICTED: eukaryotic peptide chain release factor subunit 1-like isoform X1

GO:

id name namespace
GO:0006415 translational termination biological_process
GO:0005737 cytoplasm cellular_component
GO:0016149 translation release factor activity, codon specific molecular_function

KEGG:

id description
K03265 ETF1, ERF1; peptide chain release factor subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672044.1 True 2102 mRNA 0.46 11 8674849 8687469

Neighbor

gene id symbol gene type direction distance location
spock1 spock1,LOC107747099,LOC107655663 coding upstream 33501 8440137 ~ 8641348 (+)
mars2 mars2 coding upstream 949036 7719880 ~ 7725813 (+)
LOC103027348 LOC103027348,LOC108430938 coding upstream 1000186 7671558 ~ 7674663 (+)
LOC103027052 LOC108430977 coding upstream 1022359 7612712 ~ 7652490 (+)
LOC103023202 NA coding upstream 1462353 7206477 ~ 7212496 (+)
LOC103028966 fbxw11a,LOC108430955,LOC105893085,LOC108275024,LOC107655672,LOC107588312,LOC107754486,LOC107747095 coding downstream 4481 8691950 ~ 8726635 (+)
LOC103033931 si:ch73-233f7.1,LOC108430952,LOC107596359,LOC107588310,LOC107754489,LOC107660897,LOC108274507 coding downstream 122559 8810028 ~ 8819533 (+)
LOC103031822 LOC108430951,LOC108275060,LOC107754491,LOC107747094,LOC107596358,LOC107655671,LOC107660898,LOC108275059,LOC107754490 coding downstream 139045 8826514 ~ 8857516 (+)
LOC111193048 LOC101884096,LOC108430950,LOC108430926,LOC108430927,LOC107588388,LOC108275115,LOC107747118 coding downstream 174651 8862120 ~ 8868955 (+)
LOC111193085 NA coding downstream 185181 8872650 ~ 8873657 (+)
G72209 NA non-coding upstream 190086 8483923 ~ 8484763 (+)
G72202 NA non-coding upstream 236754 8437870 ~ 8438095 (+)
G72192 NA non-coding upstream 254544 8420064 ~ 8420305 (+)
G72183 NA non-coding upstream 273371 8401246 ~ 8401478 (+)
G72175 NA non-coding upstream 282372 8392261 ~ 8392477 (+)
LOC111193079 NA non-coding downstream 97103 8784572 ~ 8793176 (+)
G72278 NA non-coding downstream 402407 9089876 ~ 9090618 (+)
G72263 LOC108438833,LOC108438829,LOC108438834,LOC107588364,LOC107596372 non-coding downstream 454893 9142362 ~ 9151966 (+)
G72285 NA non-coding downstream 540046 9227515 ~ 9227886 (+)
G72305 NA non-coding downstream 904838 9592307 ~ 9639931 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 1789308 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 2136055 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 2717830 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 2995975 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 3169211 5499908 ~ 5505638 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 181659 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 455430 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 1281037 9968506 ~ 9970042 (+)
G72621 NA other downstream 1391110 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 1585450 10272919 ~ 10626964 (+)

Expression


Co-expression Network