LOC103029169 (LOC108430921)


Basic Information

Item Value
gene id LOC103029169
gene name LOC108430921
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8958444 ~ 8961828 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672065.1
tacaagTTACTCTTGGGTTTTATTGTGAAGTTTCGATCAGGTGTTgtataatattacattaaacaaGTTATTATCAAAACCACTGCGTGTCGCTCTTGTACCACTAGCTCCAAATTCCCGATGATCTTTGCCCCTCCTCACTGAATGAGCACCTCCTTAtttctctcttccttctctctcaTTTTAACCATCTCTACATTTATTCAACTGCTCCACGGGAAATgtgaattttaatttattacattactACATGACGATGTCTGGCGTGACTTCACTGCTGCAAGTGCCCTGATAAAATATTTTGGAAGCTGTGGATTTAAAGATGCAGCTTAAAATCTGATAAAGGCTTGGATTTCTTTTGTCTCTGACTGCTGAATGTAACGGATCGTCTTTAACAGGAGGTTGTCTAACTCTCAATCATTGAGCTGCAGATTTCCAAGGATTATTTCGTACACACTTGGGCACTTGGACAATACATCATGCTCATGCATGCgcagaaacatttatttttgagctttttctctgttttggcGTCTCATGTATTGGTGATTGTTTCTGGACAGATCATATATAATGTGTTGGAGGAGGTGAAAGTTGGCACTACTGTTGGAAATGTAACTAAGGATATTAACCTGTCGGTAAAAGAACTAACCTCGAGGGAATTCCGTATCGTGTCCAGTGCTAAAAAGCAGCACTTTAGAGTTAATAAAGAGACCGGCGCCCTGCAGGTGAGTGAACAGATTGACCGAGAAGAGCTCTGCGCGTCAGCTTCATCGTGCTCTATGAATCTAGAAGCCGTAGTCAATCGTCCTCTTCAGCTTTAcagggtaaaaataaacattattgacGTTAACGATAACTCCCCGTCATTTCCCGTTAGTTCAACCCATTTAAATATCACCGAGATCACCGTTGTGGGCGCGCGCTTCCCTTTACAGAGCGCGCATGACGCAGACATTGGGGCCAACTCCTTGAAAACATACAAGCTCGGTTCAAATGAATATTTCTCGctagatacacagacacacagtgaCAAAACGATTTCTGCCGAGTTGGTCCTCATTAAAGCTCTGGATcgagaaaaaaatcaatttgtTGACCTTTTAGTTACTGCCATTGATGGTGGATCACCTGCCAGGACAGGGACATTAAATATTAGAGTTAACGTTTTAGATATCAATGACAATGCGCCTGTTTTTGCTAAGGCATTGTACAAAGTTTCCATAGCCGAGCATTGTGCAATTGGGACTACAGTTATCAAGCTTAAAGCCCAAGATTTAGATGATGGATTGAATGGAGAAGTAGTGTACTCATTTATTAGCCACACGCCTCAGAATATTCTAGATAGGTTTGAGATTGACCGACAAACTGGAGATGTTAAAATAAAACGGGCTATTGACTATGAAGAGACAACTGCGTATGAGATCCGTGTCCAAGCCACAGACAGGGGTACTGTGCCTATCTCGGGCCACACCAAACTTTTAGTCGAGGTCTTGGATATCAACGATAACCCACCTACAATAGCTATTACGTCTCTTCTTAATCCAGTCGACGAGAATGCTGGAAAAGGTACGGTTGTGGCTTTAATGACGGTATCTGACCCAGACTCTGGCAAAAATGGAGCAGTCGTCTGCAGCTTAGCTGGTTTGGGTCCATTTAAATTACAGTCTTCCTTCAGAAATTATTACTCGCTCGTGTTAGATGACGTACTTGACCGAGAAAAGATTACAGAATATAACATTACACTCATAGCCGAAGATGAAGGAATTCCCCAAATGTCGAGTAAAAAGTTAATACATGTACTAGTAGCCGATGTGAATGACAATGCACCTCGCTTCCCAGAAAAGACACAATATGCGTACCTGCGAGAAAACGGTAAAGCTGGCTCATTTGTATGCACACTTACTGCTACAGATGCGGACACAGGTGATAATGCTCTCATAACCTACTTTCTGCCACAAACTACAATCAATGGCACGTCAGTTTCGTCGTTGTTTAAAATCGACTCATTAACAGGCGAGATAGAAAGCTTGCAGTCTTTTAACTATGAGGAAATAAAAACTTTTCAGTTTAAAGTGCAGGCCATAGACTCTGGTGTTCCTCCACTCAGCAGTAATGTGAGTGTGAGCGTTTTTATTCTGGATGAGAATGACAACAGTCCTGGGATTCTCGCGCCCTATTCTGAGCACGGCTCCGTTAACACTGAGAACATACCCTACTCTGCTGAAGCGGGATATTTTGTGGCCAAGATCAGAGCTGTGGATGCTGATTCCGGTTACAATGCGCTGCTTTCTTATCATATCTCTGAACCCAAAGGAAACAACTTGTTCCGGATCGGGAGCAGCAGCGGGGAGATCAGGACTAAGAGGAGAATGAGtgacaatgacctgaaaacTCACCCGCTGGTCATTTTGGTTTCTGATAATGGAGAACCTTCACTGTCAGCCACTGTGTCTATTGACGTTGTGGTGGTTGAAAGCACAAGTGACATTCAGAGTACGTTCAAACATATAACACCATTAAAGGAGGAGAGCTTCTCGGATTTAAATCTGTACCTGCTGCTCGCCATCGTGTCGGTTTCAGTGATCTTTTTACTGAGCCTTATCAGTTTAATAGCAGTAAGATGCTACAGGACAGAGAGCAGTTTCAACAGGTACAGCGCCCCAGTGATCACCACACACCCTGATGGGAGCTGGTCTTACTCCAAATCTACTCAGCAGTACGACGTGTGTTTTAGTTCCGACACACTGAAGAGTGATGTAGTTGTTTTCCCTGCGCCATTTCCGCCTACAGATGGAGAACTGATCAGTATTAATGGAGGAGACACTTTCACCAGAACACAAACTCTGCCTAGTAATGAGAAGGTAAgagtaattaattttattatgaaGGGAACCATGTTATTtactacatatacatatactacAAATATATTGggttatttaagtaaacataaTTTCGCCTTATATGTTGTTGCATTTCCATGTTTTATTCGTATTAGTATTTTATGAATAGAGAGAGGAGGACATGTgctttcacacaaacacatgatGTCGCTGTCTGTCTTTGAATCCAAAATTATTTCCGTTCTTCTCTTTGCCCCTCCCGGTAAAAACGGGGAGGAGCATTTTCTGTGCTTTGTTTGGGACTCGTTGAGTGAGTGTGCAGTAAAAGATATCGTGTTGCGTcgcatttaaaaagaaatgtcaaTCAACACGATCGAAATTAAGTTACAATGCATGGATTAAGAAATTGGAATGATTATATTTACTATGCCAATATTTAATGCAATGGCGTTGCATCGTAGACAGTTAGTCACCTTGTGGTATTTGGTGCTTCTTCTTGCTGAGTGCTGCTTGAAAACGGCTAAGGGACAGCTTTCTTA

Function

NR:

description
PREDICTED: protocadherin alpha-2-like

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K16493 PCDHA; protocadherin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672065.1 True 3385 mRNA 0.42 1 8958444 8961828

Neighbor

gene id symbol gene type direction distance location
LOC111193082 LOC108430922 coding upstream 28203 8927031 ~ 8930241 (+)
LOC111193084 LOC108430922 coding upstream 54350 8902284 ~ 8904094 (+)
LOC111193081 LOC108275114,LOC107588388 coding upstream 61626 8894211 ~ 8896818 (+)
LOC111193083 NA coding upstream 74256 8881863 ~ 8884188 (+)
LOC111193085 NA coding upstream 84787 8872650 ~ 8873657 (+)
LOC111193080 NA coding downstream 8750 8970578 ~ 8973406 (+)
LOC107197811 NA coding downstream 130395 9092223 ~ 9093477 (+)
LOC103033622 LOC108438830 coding downstream 135551 9097379 ~ 9100230 (+)
LOC111193087 NA coding downstream 158702 9120530 ~ 9122791 (+)
LOC103033934 LOC105891230 coding downstream 165479 9127307 ~ 9130230 (+)
LOC111193079 NA non-coding upstream 165268 8784572 ~ 8793176 (+)
G72209 NA non-coding upstream 473681 8483923 ~ 8484763 (+)
G72202 NA non-coding upstream 520349 8437870 ~ 8438095 (+)
G72192 NA non-coding upstream 538139 8420064 ~ 8420305 (+)
G72183 NA non-coding upstream 556966 8401246 ~ 8401478 (+)
G72278 NA non-coding downstream 128048 9089876 ~ 9090618 (+)
G72263 LOC108438833,LOC108438829,LOC108438834,LOC107588364,LOC107596372 non-coding downstream 180534 9142362 ~ 9151966 (+)
G72285 NA non-coding downstream 265687 9227515 ~ 9227886 (+)
G72305 NA non-coding downstream 630479 9592307 ~ 9639931 (+)
G72306 NA non-coding downstream 636121 9597949 ~ 9651534 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 2072903 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 2419650 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 3001425 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 3279570 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 3452806 5499908 ~ 5505638 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 181071 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 1006678 9968506 ~ 9970042 (+)
G72621 NA other downstream 1116751 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 1311091 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 3909656 12871484 ~ 12897931 (+)

Expression


Co-expression Network