LOC111193080


Basic Information

Item Value
gene id LOC111193080
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8970578 ~ 8973406 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672076.1
ATTTGACTGCTTGgcatatgtaaaaataaattagttacTGATTAATGTATACACTATGGTTACCAAACAGACTATAGtttatgcattaaaatatttattcttaTACGTCGTTacagaattaaaatataatagttttattaattaaacttaCTTTTCAGATTCTTAATATAAGTTCTTAACATTCATAACAGGTCTTCTTCATTTGTACACATGGTGTCACTCTGTACCACGAAATGGAGAAATGTAGTGACTTTCTGAGACTCCTCCTTTTGTGAGGTCAGAGAAAAGGAGTGGGGGCTTCTTTGTTCGGTTAAGCTAAAGACGATGGAAATGGTAGTAAGGCCTATAAACACAGTGCTGATATCAGTTCGATTTTTAAGAGATTTTTTGAAGGTTTGAGTGCAATGAGTGTTTGTCGACCTGGCTAATGCTCCGCCCGCTACGATGATCTCTCCAGGACAGACAAAGAAGCTGTGGACTCGATGCGTCGCTGTGCTTTGGTTTTTGCACTTATGCGGTGCACAGATATTGTACTCGGTGTCGGAAGAGATAAGTAAAGGGACTGTCGTGGGAAACATCGCAAAGGATTTAAACCTTAATACGCAGGATCTCGAGTCGACGGGACTGCGGATTGTTTCGGGACACAATAAGAGGTATTTTGATGCAGATTTGAAAACGGGATTGCTCGTTGTCAATGAACGGATAGACAGAGAAGAGCTGTGTGGCAATGCAGCTAAGTGCTCTGTAAATATAGAAGCAATTCTCAGCAACCCTATGCAGCTTCACAGAATAGAGGTAAATATATTAGACATGAATGACAATGCGCCATTTTTTAGTGAAATTTCCTATTTTCTTAATATTACAGAATTAACATATACAGGGGAGAGATTTCCGTTACCAGTAGCAAATGATATGGATTCAGACAGGAATTCTGTCAAAAGCTATAAACTGAGCACAAATCAACATTTTTCTCTGGATGTACAAAGCGGAGAGGAGCAAAGTGTATCCTCCGAATTAGTACTGCAGAATGCTTTAGACCGAGAAAAACAGCCTGCAATCCTGCTAACACTTACTGCAATAGACGGAGGAAAACCCCCACGATCAGGTACATTACAAATAGTGGTCAATGTTGAAGATGTGAATGATAACACTCCTGTATTCACGAAACCGCTTTATAAAGTACGCGTGGATGAAAATAGTCCACTGGGAACTACCATTGTTAAACTGGAAGCTACAGATTTAGACGAGGGCGTAAATGGAGAGCTAGTGTATTCTTTCACTGCTGGAGGGACTTCAAAGATTCATGATCAGTTCAGGATAGACTCAGTAACAGGAGAAATTACTATAAGAGGGAAACTCGATCATGAAGAAAATCCAGTATACGAAATTCGGGCTCAGGCTAGAGATAAAGGCACCCCATCCCGTGTAACACATTGTAAAATACTTCTTGAAGTTCTAGATGATAACGACAACGCACCAGAGATTACAACGTCATCTTTGATGAGCCCAGTTAAAGAAGATTCCTCTTTAGGGACAGTAGTGGCGCTAGTCACAGTTACTGATAAGGATAGTGGAAAAAATGGACAAACCAAAGCATATGTTTCAGGATCCGTTCCGTTTAAACTACAGTCGTCCTACAAAAATTATCATTCCTTAGTTGTCGATGGCCAGTTGGACAGAGAAAGTATCTCACAATATGACATCAGTGTCTTATCAACGGATGAAGGGACCCCACCTCTGTCCAGTAGTATTGTAATTACTCTATTCGTTTCTGATGTGAATGATAACGCGCCGTTCTTTCCAGATCCCGTCATTAACATTTATGTGAAAGAGAACAGTCAGATTGGAACTGTTATTCAAACAATATCTGCTTTTGATCCGGATGTAGGTGATAATGCCAGAATAACATATTCACTATTAGAAAGCTCTAAAAGCACCCCAGTTTCGTCTCTGATTAATGTAAACGCTGACAGTGGAGAAATTCACAGTTTACAATCTTTTAATCACGAGGAAATTAAAACGTTTCAGTTTAAAGTGCAGGCCACAGACGCGGGTGTTCCTCCTCTAAGCAGTAACGTAAGTGTGAACGTTTTTATCCTGGATGAGAATGACAACATTCCCGGAATCCTCGCGCCCTATTCTGAGCAAGGATCAATTAACACAGAGAACATCCCCTATTCTGCTGAAGCGGGATACTTTGTGGCAAAgatcagagctgtagatgccgATTCTGGTTACAATGCACTCCTTTCTTATCATATCTCTGAGCCCAAAGGGAACAACTTGTTCCGGATTGGAAGCAGCAGCGGAGAGATCAGGACTAAGAGGAGAATGAGtgacaatgacctgaaaacTCACCCGCTGGTCATTTTGGTGTCTGATAATGGACAGCCTTCACTGTCAGCCACTGTGTCTATTGATGTTGTGGTGGTTGAGAACCCAGGCGACATTCAGACTAAGTTTAAACATGTTCCATTAAAGGAGGAGAGCTTCTCGGATTTAAATCTGTATCTGCTGATCGCCATCGTGTCGGTTTCAGTGATCTTTTTACTGAGCCTCATCAGTTTAATAGCAGTAAAATGCTACAGGACAGAGAGCAGTTTCAGCAGGTACAGCGCCCCAGTGATCACCACACACCCTGATGGGAGCTGGTCTTACTCCAAATCTACTCAGCAGTACGACGTGTGTTTTAGCTCCGACACACTGAAGAGTGACGTAGTAGTTTTCCCTACGCCATTTCCGCCTGCAGATGCAGAATTAATCAGTATTAATGGAGGAGACACTTTTACCAGAACACAAACTCTTCCTAGTAATGAGAAGGTAAGATAG

Function

GO: NA

KEGG:

id description
K16493 PCDHA; protocadherin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672076.1 True 2829 mRNA 0.41 1 8970578 8973406

Neighbor

gene id symbol gene type direction distance location
LOC103029169 LOC108430921 coding upstream 8750 8958444 ~ 8961828 (+)
LOC111193082 LOC108430922 coding upstream 40337 8927031 ~ 8930241 (+)
LOC111193084 LOC108430922 coding upstream 66484 8902284 ~ 8904094 (+)
LOC111193081 LOC108275114,LOC107588388 coding upstream 73760 8894211 ~ 8896818 (+)
LOC111193083 NA coding upstream 86390 8881863 ~ 8884188 (+)
LOC107197811 NA coding downstream 118817 9092223 ~ 9093477 (+)
LOC103033622 LOC108438830 coding downstream 123973 9097379 ~ 9100230 (+)
LOC111193087 NA coding downstream 147124 9120530 ~ 9122791 (+)
LOC103033934 LOC105891230 coding downstream 153901 9127307 ~ 9130230 (+)
LOC111193051 NA coding downstream 161043 9134449 ~ 9153260 (+)
LOC111193079 NA non-coding upstream 177402 8784572 ~ 8793176 (+)
G72209 NA non-coding upstream 485815 8483923 ~ 8484763 (+)
G72202 NA non-coding upstream 532483 8437870 ~ 8438095 (+)
G72192 NA non-coding upstream 550273 8420064 ~ 8420305 (+)
G72183 NA non-coding upstream 569100 8401246 ~ 8401478 (+)
G72278 NA non-coding downstream 116470 9089876 ~ 9090618 (+)
G72263 LOC108438833,LOC108438829,LOC108438834,LOC107588364,LOC107596372 non-coding downstream 168956 9142362 ~ 9151966 (+)
G72285 NA non-coding downstream 254109 9227515 ~ 9227886 (+)
G72305 NA non-coding downstream 618901 9592307 ~ 9639931 (+)
G72306 NA non-coding downstream 624543 9597949 ~ 9651534 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 2085037 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 2431784 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 3013559 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 3291704 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 3464940 5499908 ~ 5505638 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 169493 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 995100 9968506 ~ 9970042 (+)
G72621 NA other downstream 1105173 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 1299513 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 3898078 12871484 ~ 12897931 (+)

Expression


Co-expression Network