LOC111193081 (LOC108275114,LOC107588388)


Basic Information

Item Value
gene id LOC111193081
gene name LOC108275114,LOC107588388
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8894211 ~ 8896818 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672077.1
TAAAAGCACGCTTGGTGTCGCTGCTTTACAGGTTATATcgtacttatttttattctccATTGCGCATGCACAATGTATGAACGATGCTGTTGTACTTCAGGGCAGAAAAAACGTTTCGACATGTCCCTAAGCCATTTGTGTCGTTGCATTGAATTCTCTAATTTTTGGGGAGCTAAGCAGGTCGGTGGATAATTACTCAACTATTTGCGATGCTGCAGAGGATATTTTAACTTTCACAATGACGGCCCGGGATAGCACTATGCTGAAGATCTTCCTgtgctgttttttcttcatgtttTCTTGTGAAGGGGTTCTGGCTCAAATTCGCTACTCTATTGCAGAGGAATCTAAAACAGGATCTGTTGTGGGAAATATTGCGAAAGACTTGGGGTTTGATGTGGATAAAATTAAAGATAGACGGTTTCGGATCGTCTCCGCGTCAAATGATCGTTTCTTGCAGATAAACCAGGACAATGGATTGCTGTACGTGAGTGGGAAAATCGACAGGGAGGAGCTATGTGAGAAAAGCAGTCTGTGTACAGTAAATCTTAAAACTGTAGCTGAAAACCCGTTAGAGGTTCATTATATAGAGGTCGATATTAGAGATATCAATGATCACTCTCCTATATTTCCTGTACGAGAGAAGCATTTAGATATATCAGAAAATGCAGTGCCACAGAGTACGCGAGTCCCCCTGGACGCTGCGCGGGATTTAGACGCTGGAGTAAATTCTTTACATAAGTACATTCTCAGTGCAAATAGTCACTTTGAACTAGATGTAAAAACTCGTGGGGAAGACAAAATTCCTTTTCTGCTACTTAAAAAACCTCTAGACAGAGAACATAATTCTGAACTGCATCTAACCCTGACGGCATATGATGGAGGAAAGCCCGAAAGATCAGGATCAGTAAATATTACAATTAATGTCATTGACATTAATGATAATGCTCCAGTTTTTGATCGTCAAGTATATACTGTGACAATAGAGGAAAATTCACCATTTGGCTCTTCGGTGGTAAAACTACATGCCACCGATTTAGACGAGGGTGCAAATGCACAGGTTGTTTATGCATTTGATAAAAGTGTAATGAACAAAGCTtttgaaaaatttgaaatagaTTCAAATACAGGAAAAATTACTGTAAAAGGACTAATAGATTTCGAGGAACAGAGTGTGTATGAAATAGATATCCAGGCATCAGACAAAGGTCCAGTCGTTTTGATAGGCCACTGCAGTGTTGTTATCAATATAAAAGACGTCAATGATAACGTTCCTCAAATAGACGTGACCTCACTGTCTAATAAAATTCTAGAGGACGCGAATCCAGGTTCAGCTATTGCCCTTATCGGTTCATCTGATAGAGATTCGGGAGATAATGGTGTAGTGATTTGCACACTTATAGAAGACATCCCATTTGAGTTGAAACCTTCTTTCCAGAAGAGCATGTACTCACTTGTTACTAAAAACCGCTTAGACAGAGAATCTGTGTCTATGTATACTATAATTATAATGTGTTCAGACAGAGGTCAGCCATCTTTATCTACACggaaaacaataaaagttgATATTGCAGATGTGAATGACAACAAACCAATGTTTATTCAAAACccatatgtgttttatattaaagaaaacaatagtCCAGGTGCATCCATATTCTCCATTAGTGCCTTTGATGTAGATCAGAATGAAAATGCTCATCTAGCCTACCACATTTTAAAGGATGAAAACATTGACACAAACATAGTCTCATATCTTAATATAAACTCTGAAGACGGGAATGTCTACGCACTAAAAAGTTTGGATTTTGAAACAGTCAAAACATTCCAGTTCCACGTGCTTGCTACTGATTCTGGAACTCCACCTTTGAGCAGCAACGTTACAGTTAATGTGTTCATTCTGGACCAGAACGACAATGTTCCAGTGATCTTATATCCAGTCAGCTCTAACGGATCTGCAGAAGGTGTGGAGGAGATTCCTCGCAATGTGAACGCAGGACATTTGGTGACTAAAGTGAGAGCCTATGACGCAGATATAGGTTACAACGGGTGGTTATTGTTTTCACTGCAGGAAGTAAGTGACCAcagtttgtttggtttggatcgttatactggacagataaggACCCTCCGCTCATTCACAGAAACAGACGAGTCTCAACATAaactggtcatactggtcaaagACAATGGCAATGTGTCGCTTTCAGCAACAACGACTGTAATTATCAAAGTTGTAGAGCCCAAAGAGGCTTTTGCAGCTTCTGATGTTAAAAACTCGATAAAAGCTGAGGAGGACAATGACATTGCTTTTTATCTGATCATCACTCTGGGTTCTGTTTCAGCCCTTTTTGTCATAAGCATCATTGTTCTGATCGTGATGCAGTGCTCCAAGTCAACAGACTATTCCTCCAAACATTTACAAGATACAAATTATGATGGGACACTGTGTCACAGCATCCAGTACAGATCAGGAGATAAACGCTACATGTTGGTTGGACCCAGAATGAGTATCGGTTCTACTTTAGCACAAGGTAGTAATAGGAATACTCTAGTCGTATCAGACCGCAGAAGATCATCTGTAGAGGTAAGATTACTCAAAAAATGA

Function

NR:

description
PREDICTED: protocadherin alpha-4-like

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672077.1 True 2608 mRNA 0.40 1 8894211 8896818

Neighbor

gene id symbol gene type direction distance location
LOC111193083 NA coding upstream 10023 8881863 ~ 8884188 (+)
LOC111193085 NA coding upstream 20554 8872650 ~ 8873657 (+)
LOC111193048 LOC101884096,LOC108430950,LOC108430926,LOC108430927,LOC107588388,LOC108275115,LOC107747118 coding upstream 25256 8862120 ~ 8868955 (+)
LOC103031822 LOC108430951,LOC108275060,LOC107754491,LOC107747094,LOC107596358,LOC107655671,LOC107660898,LOC108275059,LOC107754490 coding upstream 36695 8826514 ~ 8857516 (+)
LOC103033931 si:ch73-233f7.1,LOC108430952,LOC107596359,LOC107588310,LOC107754489,LOC107660897,LOC108274507 coding upstream 74678 8810028 ~ 8819533 (+)
LOC111193084 LOC108430922 coding downstream 5466 8902284 ~ 8904094 (+)
LOC111193082 LOC108430922 coding downstream 30213 8927031 ~ 8930241 (+)
LOC103029169 LOC108430921 coding downstream 61626 8958444 ~ 8961828 (+)
LOC111193080 NA coding downstream 73760 8970578 ~ 8973406 (+)
LOC107197811 NA coding downstream 195405 9092223 ~ 9093477 (+)
LOC111193079 NA non-coding upstream 101035 8784572 ~ 8793176 (+)
G72209 NA non-coding upstream 409448 8483923 ~ 8484763 (+)
G72202 NA non-coding upstream 456116 8437870 ~ 8438095 (+)
G72192 NA non-coding upstream 473906 8420064 ~ 8420305 (+)
G72183 NA non-coding upstream 492733 8401246 ~ 8401478 (+)
G72278 NA non-coding downstream 193058 9089876 ~ 9090618 (+)
G72263 LOC108438833,LOC108438829,LOC108438834,LOC107588364,LOC107596372 non-coding downstream 245544 9142362 ~ 9151966 (+)
G72285 NA non-coding downstream 330697 9227515 ~ 9227886 (+)
G72305 NA non-coding downstream 695489 9592307 ~ 9639931 (+)
G72306 NA non-coding downstream 701131 9597949 ~ 9651534 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 2008670 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 2355417 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 2937192 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 3215337 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 3388573 5499908 ~ 5505638 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 246081 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 1071688 9968506 ~ 9970042 (+)
G72621 NA other downstream 1181761 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 1376101 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 3974666 12871484 ~ 12897931 (+)

Expression


Co-expression Network