LOC111193083


Basic Information

Item Value
gene id LOC111193083
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8881863 ~ 8884188 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672079.1
tttcagtattcgTTAGTGCTTCTGTACTATTGTGGAATCCACAGGTAGTACATTTGTGTCCACCACTTAAAATCATGTTTCCTTAATACAAACCGAACATTGCACACCTCCTTAGTAAACCATTTTACAATTGTTTGGGACAACAAAGTTGTCTGGCTGGAGATTTAAAGCAAGCGGTCTGACGTTCAAGGTATGAAAAATTCTGTAGCAAAGTAAAAAATCCGCACAAATACTAGTTGCGAATAGGAAGAACtctctaatataaaaaaaacgcaAGTAAAACCAAATGTTATTTTGGTCGTGTCTAAGTTATTAGTGACCACTCGGCGTCAGTGttgttttaaaattgaaaaGATTGTTGTAAGCCCTCCTCTAAAAGCAGACATGCGTAGTTCTGTTTTGTTTCGGACGAACGTGGATATACAGCCTGAGAAAATGTAGCTCTGTAGAGTCTATGTCTGATTTGATAAACCGATTATTTGCTTTTAGTATGTAGTGCTAATTATGAACCTTGATTTGACGCAGTACTGCATTTTTTGAAAGTAgaggattttttattttctgttggaAGAGGTTTGGAGTAGTCGTATACAATGGAATATATCAAAGAGAGACGCAAATGGAAGTACTGCGGGATTTTTCTCGGCTTTTCTTTGCTGCTGTGCTTTGCGGATCAAGCGTCATCTCACATAAGGTACTCTGTTCCTGAAGAAGTCAAAGAGGGATACATTGTGGGAAATATTGCTAAAGATTTGGGCCTTGATGTAGGAACTCTGATGGACCGAGGATTTCGTCTCGTTTCTGGATCTAACGACGCCTATTTTCAGGTGAATCAGAACAATGGCATTCTGTCTGTTCATAAGAAAATCGACAGAGAAGAAATATGTGATGGCATGAACACCTGCATAATAGATATTAAAATCGTCGTCGAAAACCCTCTGGAGATCCATTACGTGGCAGTGGAAATTACAGACACGAATGATCATGCTCCAGTATTTCCAGATAAGCAACAAAGAATGGAGATAGCAGAAAACACTCTACCGGGCGCGCGCTTTCAGCTACGAAGTGCAAGGGATCCAGATATCGGGGTATATTCTGTGCGAGCCTACAAATTAACTCAAAACGAGCATTTTGATCTAGAAATAAGAGACAGGGGTGACGAGAAAGTACCCTTTCTCGTTTTACAGAGAGCAGTAGATAGGGAACGTAAAGCTGAACACAAATTACTACTGACAGCAATAGATGGTGGGAATCCACCAAATTCTGGTACTTTAAATGTTATTGTTACTGTTCTGGATAATAATGACAATCGCCCAGTGTTTAGTCATGAAGTGTACACGGCACAAATACATGAAAATATTCCGATAGGGACCATGGTCATCAAGGTTAATGCAATCGATTTGGATGAAGGGTTGAACGGAGAAGTTCTGTACTCTCTTGGAAACAACTATGGTATGtttgatttaaataatgttacagGTGAAATTTGGGTGAAGGGTGAAATAGactatgaaaaaaatgatgtataTAGACTAGATGTATTGGCTTCTGATAAAGGCACACCTCCAATGACAGTTGATTGCAGGGTCATTGTGAAAATTTTAGATGTTAACGATAACAATCCAGAAATAGAAGTTACATCACTTTCTAACTTAGTGCCAGAAAATTCCAAACCTGGAACTGTTATTTCATTAATCAGTATCTTAGATAAAGACTCCGGTGTAAACGGGAAGGTGTTATGCACGTTATCACCCAATATACCATTTGAACTTAAACCGTCTATAAAAGACAATATGTATTCCTTAGTCACAAAAACGCAATTGGACCGAGAGGAAACTTCACTTTATGAAATCAAAATCAAAGCAACAGATCTTGGTCAACCTCCCCtaactgcagaaaaaaatattagcgTTCAGGTGTCCGATGTGAATGATAATCGTCCGGAGTTTTTCCAAAATCCACTTGAACTTTATTTAATGGAAAATAACTCACCAAGTGCCTCAATGTATTCTATTGCTGCAGTGGATAAAGATATACATGAAAATGCAGCAATTTCATATAGAATTCTTAAAGAGAGTAgtttgcaaaacaaaatggctTCATTCCTCAATATTAATTCTGAAACAGGCGTTATTTATGCACTGACGAGATTTGACTTTGAAGTAACCAAGTCTTTTCAGTTCCACGTGCTCGCTACCGATTCTGGAACTCCACCACTGAGCAGCAACTCACAGTCAATGTGTTCATTCTAGATCAGAACGACAACGTTCCAGTGATCTTATATCCAGTCATCTCTAACGGATCTGCAGAAGGTGTGGAGGAGGTT

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672079.1 True 2326 mRNA 0.38 1 8881863 8884188

Neighbor

gene id symbol gene type direction distance location
LOC111193085 NA coding upstream 8206 8872650 ~ 8873657 (+)
LOC111193048 LOC101884096,LOC108430950,LOC108430926,LOC108430927,LOC107588388,LOC108275115,LOC107747118 coding upstream 12908 8862120 ~ 8868955 (+)
LOC103031822 LOC108430951,LOC108275060,LOC107754491,LOC107747094,LOC107596358,LOC107655671,LOC107660898,LOC108275059,LOC107754490 coding upstream 24347 8826514 ~ 8857516 (+)
LOC103033931 si:ch73-233f7.1,LOC108430952,LOC107596359,LOC107588310,LOC107754489,LOC107660897,LOC108274507 coding upstream 62330 8810028 ~ 8819533 (+)
LOC103028966 fbxw11a,LOC108430955,LOC105893085,LOC108275024,LOC107655672,LOC107588312,LOC107754486,LOC107747095 coding upstream 155228 8691950 ~ 8726635 (+)
LOC111193081 LOC108275114,LOC107588388 coding downstream 10023 8894211 ~ 8896818 (+)
LOC111193084 LOC108430922 coding downstream 18096 8902284 ~ 8904094 (+)
LOC111193082 LOC108430922 coding downstream 42843 8927031 ~ 8930241 (+)
LOC103029169 LOC108430921 coding downstream 74256 8958444 ~ 8961828 (+)
LOC111193080 NA coding downstream 86390 8970578 ~ 8973406 (+)
LOC111193079 NA non-coding upstream 88687 8784572 ~ 8793176 (+)
G72209 NA non-coding upstream 397100 8483923 ~ 8484763 (+)
G72202 NA non-coding upstream 443768 8437870 ~ 8438095 (+)
G72192 NA non-coding upstream 461558 8420064 ~ 8420305 (+)
G72183 NA non-coding upstream 480385 8401246 ~ 8401478 (+)
G72278 NA non-coding downstream 205688 9089876 ~ 9090618 (+)
G72263 LOC108438833,LOC108438829,LOC108438834,LOC107588364,LOC107596372 non-coding downstream 258174 9142362 ~ 9151966 (+)
G72285 NA non-coding downstream 343327 9227515 ~ 9227886 (+)
G72305 NA non-coding downstream 708119 9592307 ~ 9639931 (+)
G72306 NA non-coding downstream 713761 9597949 ~ 9651534 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 1996322 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 2343069 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 2924844 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 3202989 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 3376225 5499908 ~ 5505638 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 258711 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 1084318 9968506 ~ 9970042 (+)
G72621 NA other downstream 1194391 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 1388731 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 3987296 12871484 ~ 12897931 (+)

Expression


Co-expression Network