LOC111193084 (LOC108430922)


Basic Information

Item Value
gene id LOC111193084
gene name LOC108430922
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8902284 ~ 8904094 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672080.1
TTGGATGTTTTTATACGGCGCATCGTCTCATACAAGGAGCGTTTCTATGTTGATCAGATTGTTCGTTTTAGTTCAATAAGATTAATTTATTGAGCACTAATATGGGAATTCAGTGTGTGGATTATCACTAGTAACGTGGACGGACTCAGGACTAATTTCTCGAAAAATGGAACAAAGGCGTTGTGCATCATGGCGACTGAAGCTGGCTTGTGCAGgattgttacttttattttggaaaGGGGTCTTTGCACAGATTCGATACTCGGTTCATGAGGAGCAAATGAATGGCACTGTTGTTGGAAACATCGCAAAGGATTTGGGTATTGATCAGAGAATTTTAAAAGAACGAGGATTTCGTATCGTATCAACGACAGAGGAGCCCCTGTTCAGGTTAAATCGGAATGACGGAGCCTTACATGTCAATGGGAAGATAGACAGAGAGGAGGTGTGCGAGAGAAGCAGTTCGTGCCTGATTAATCTAAAAATTGCTCTTGAGAATCCTCTGGAGATTCATTATGTAACAGTTGAGATAGTTGATATAAATGATCATGCACCGATATTCCCGGAGAAAGAAAAGCGATTGGAAATATCAGAAATCGCCTTAGCTGGTGCGCGTTTTCAGCTTCAAGGTGCACGCGATGCAGATAGCGGAGTAAATTCagtgcaaatatataaactcaGTCAAAACGAACATTTTAGAATCGAGATTAAAGAGCGCGGATTGGATCGAAAGATGCCTTTCTTAATTTTACAGAAACCACTAGATAGGGAAACCAACTCAAGGCATAAGCTTCTACTTACCGCGCTGGACGGTGGGAGACCCCAGAAATCGGGCACAATGGATATATTTGTGGATGTGATAGATGTGAATGACAACGTGCCGGTATTTACTAAAGACTCTTACTCTGTAAAGCTAAGTGAAAACGCCCCAGTTGGTACAACAGTGATTCATGTAAATGCAACTGACGTAGACGAGGGTGCAAATGGTGAGGTATTTTATAGTTTTGGGCAAGATATGGACAGTGACCTGCTTAGAATTTTTGCCCTAGATCCTGTTACAGGTGAAATAGTTGTGAAAGGACCAATAGATTTTGAACAAAAGGAACAATACGAGATTGATATTCAGGCATCAGATAAGGCATTGGCACCACTGACCACAGATAAGAGCATTCTTATCCAAATTGTAGACGTAAATGATAATGCGCCGGAAATTGAAGTGACATCATTTTCAAGTGCAATACCAGAGAACTCAAAGTCTGGAACAACAGTGGCACTAATTAGTGTGAGTGATTTTGATTCTGGAATGAATGGGAAGGTGTTCTGCTCAGTACCTGAAGATATACCTTTCAGTTTAATTAAGTCATCACAGGAGAACATTTACTCATTAACAACTACTTCATCACTGGATAGAGAGAAAACATCCCAGTATGACATTACATTAACTGCTAAAGATGCAGGGCATCCACCATTATGTTCCATTAAAACTGTTACTGTGCTTGTTTCTGATGTAAATGATAACAGCCCAGAGTTTTCTGTAAACCCTTACACTTTTTATGTACCTGAAAATAATGTACCAGGTATGTCGCTGTTCTCTGTCTCTGCTCATGATCTTGATTTAGATGAAAATGCTGTAATAAGCTACCACATTTGGAGAgaccctgctgaagaaaataaGCATTCATCTTTTCTAAACATAAACCCTGAAACAGGGGAGATATATGCACTGAAAGTTTTGACtttgaaaatattaaatcattcaaGCTCTTTACTGTAGCATCAGATTCAGGAACTCCATCACTGAGCAGCAATGT

Function

NR:

description
PREDICTED: protocadherin alpha-8-like

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672080.1 True 1811 mRNA 0.40 1 8902284 8904094

Neighbor

gene id symbol gene type direction distance location
LOC111193081 LOC108275114,LOC107588388 coding upstream 5466 8894211 ~ 8896818 (+)
LOC111193083 NA coding upstream 18096 8881863 ~ 8884188 (+)
LOC111193085 NA coding upstream 28627 8872650 ~ 8873657 (+)
LOC111193048 LOC101884096,LOC108430950,LOC108430926,LOC108430927,LOC107588388,LOC108275115,LOC107747118 coding upstream 33329 8862120 ~ 8868955 (+)
LOC103031822 LOC108430951,LOC108275060,LOC107754491,LOC107747094,LOC107596358,LOC107655671,LOC107660898,LOC108275059,LOC107754490 coding upstream 44768 8826514 ~ 8857516 (+)
LOC111193082 LOC108430922 coding downstream 22937 8927031 ~ 8930241 (+)
LOC103029169 LOC108430921 coding downstream 54350 8958444 ~ 8961828 (+)
LOC111193080 NA coding downstream 66484 8970578 ~ 8973406 (+)
LOC107197811 NA coding downstream 188129 9092223 ~ 9093477 (+)
LOC103033622 LOC108438830 coding downstream 193285 9097379 ~ 9100230 (+)
LOC111193079 NA non-coding upstream 109108 8784572 ~ 8793176 (+)
G72209 NA non-coding upstream 417521 8483923 ~ 8484763 (+)
G72202 NA non-coding upstream 464189 8437870 ~ 8438095 (+)
G72192 NA non-coding upstream 481979 8420064 ~ 8420305 (+)
G72183 NA non-coding upstream 500806 8401246 ~ 8401478 (+)
G72278 NA non-coding downstream 185782 9089876 ~ 9090618 (+)
G72263 LOC108438833,LOC108438829,LOC108438834,LOC107588364,LOC107596372 non-coding downstream 238268 9142362 ~ 9151966 (+)
G72285 NA non-coding downstream 323421 9227515 ~ 9227886 (+)
G72305 NA non-coding downstream 688213 9592307 ~ 9639931 (+)
G72306 NA non-coding downstream 693855 9597949 ~ 9651534 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 2016743 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 2363490 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 2945265 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 3223410 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 3396646 5499908 ~ 5505638 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 238805 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 1064412 9968506 ~ 9970042 (+)
G72621 NA other downstream 1174485 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 1368825 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 3967390 12871484 ~ 12897931 (+)

Expression


Co-expression Network