LOC111193085


Basic Information

Item Value
gene id LOC111193085
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8872650 ~ 8873657 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672081.1
CGGTGTCAGTGTTGTGCTAACTTTTTTGTAAATCAGACGTCCTGCCCTAATGCTGACGTACACAGTCTATTTTCCTTCAAGATGAACTTGGGGGCAGTCTAAGCTGAGCTAATGTGACCATTTTAATGATTAAAGGCGTTTTAAATACTAGCAGTATTTGAAAATAGACATGCTGCTCATGCTTTATTGAAGTATCTAAAATCTGGAGTTTTCCTATTGTTTGGATATTCGCTTTGGAGAACTCATTTATGATGGATGACGGCAGACAAAGGCGAAGATGGGTGTATTGGATTATATCTTTACATTTCTCTATACTGCTGTTCTTCGAGGAGCAGGTTTTGGCTCAGATAAGGTATTCTTTACAAGAGGAGGTAAAAGAGGGATTCGTCGTAGGAAACACTGCTAAGGATTTGAGTATTGATGTCAACACTATGGTGGACAGACGGATTCGTATTGTCTCCGGATCTAATGACGATCTTTTTCGGGTAAACCAGAACAATGGCGTGTTGTATGTTCACAAGAAAATAGACAGAGAAGAAATATGTGAGAGCAACAATCCTTGTGTGGTTAACCTCAAAATCGTTGTAGAAAACCCACTGGAGATTCATTATGTGCGGATAGAAATAATGGATATAAATGACCACGCGCCTATTTTTTCCGAAGAGCAACAAAGAGTGGAGATAGCTGAAACCACGCACCCGGGGGCGCGCTTTCAGTTGCAGAGTGCACGTGATCCAGATATCAGTGTAAACTCCGTGCGCTCATACACATTGAGTCAGAATGAGCATTTTGATTTAGAGATCAGAGATATGGGAGATGAAAAGGTACCCTTTTTGGTTTTACAAAGAGCCTTGGACAGGGAGCATAAAGCTAAGCACGAAATAAAACTGACAGCAACAGATGGAGGAAATCCACCAAATCTGGAacattaaatatcactgtggtCGTTTTAGACAATAATGACAACCGTCCAGTGTTTAGTCAAGATATTTACACATCACAAATCCA

Function

GO:

id name namespace
GO:0045202 synapse cellular_component

KEGG:

id description
ko04727 GABAergic synapse
ko04723 Retrograde endocannabinoid signaling
ko05032 Morphine addiction
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672081.1 True 1008 mRNA 0.40 1 8872650 8873657

Neighbor

gene id symbol gene type direction distance location
LOC111193048 LOC101884096,LOC108430950,LOC108430926,LOC108430927,LOC107588388,LOC108275115,LOC107747118 coding upstream 3695 8862120 ~ 8868955 (+)
LOC103031822 LOC108430951,LOC108275060,LOC107754491,LOC107747094,LOC107596358,LOC107655671,LOC107660898,LOC108275059,LOC107754490 coding upstream 15134 8826514 ~ 8857516 (+)
LOC103033931 si:ch73-233f7.1,LOC108430952,LOC107596359,LOC107588310,LOC107754489,LOC107660897,LOC108274507 coding upstream 53117 8810028 ~ 8819533 (+)
LOC103028966 fbxw11a,LOC108430955,LOC105893085,LOC108275024,LOC107655672,LOC107588312,LOC107754486,LOC107747095 coding upstream 146015 8691950 ~ 8726635 (+)
LOC103031395 etf1,LOC108430956,LOC108275025 coding upstream 185181 8674849 ~ 8687469 (+)
LOC111193083 NA coding downstream 8206 8881863 ~ 8884188 (+)
LOC111193081 LOC108275114,LOC107588388 coding downstream 20554 8894211 ~ 8896818 (+)
LOC111193084 LOC108430922 coding downstream 28627 8902284 ~ 8904094 (+)
LOC111193082 LOC108430922 coding downstream 53374 8927031 ~ 8930241 (+)
LOC103029169 LOC108430921 coding downstream 84787 8958444 ~ 8961828 (+)
LOC111193079 NA non-coding upstream 79474 8784572 ~ 8793176 (+)
G72209 NA non-coding upstream 387887 8483923 ~ 8484763 (+)
G72202 NA non-coding upstream 434555 8437870 ~ 8438095 (+)
G72192 NA non-coding upstream 452345 8420064 ~ 8420305 (+)
G72183 NA non-coding upstream 471172 8401246 ~ 8401478 (+)
G72278 NA non-coding downstream 216219 9089876 ~ 9090618 (+)
G72263 LOC108438833,LOC108438829,LOC108438834,LOC107588364,LOC107596372 non-coding downstream 268705 9142362 ~ 9151966 (+)
G72285 NA non-coding downstream 353858 9227515 ~ 9227886 (+)
G72305 NA non-coding downstream 718650 9592307 ~ 9639931 (+)
G72306 NA non-coding downstream 724292 9597949 ~ 9651534 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 1987109 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 2333856 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 2915631 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 3193776 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 3367012 5499908 ~ 5505638 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 269242 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 1094849 9968506 ~ 9970042 (+)
G72621 NA other downstream 1204922 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 1399262 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 3997827 12871484 ~ 12897931 (+)

Expression


Co-expression Network