LOC103034588 (pcdh2g29,LOC108438829,LOC108438834,LOC107596372)


Basic Information

Item Value
gene id LOC103034588
gene name pcdh2g29,LOC108438829,LOC108438834,LOC107596372
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9171322 ~ 9174899 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672083.1
ttattattgttattattaatagtttCATCATTTTATTAATACACATTTCACTTCTTGTTGTCGAGTTGACTAACAGTTATGTGAAATTTAATGCTCACTTAGTGTCTTAAGCCTCTGTCCTTGGTGCTGAAATCGACGTTATTCCTTCCAGATGCAGTTCATGGCATGGGTCTCTGTAAATTGTTAAAAGAATTGTCTGTTTAAGTTCGATActatttatgtaaatattaagtTTCATTATTAAGCATGTCTCTAACTTTCGTCATGGTTTAGAAATAATTTATATGCTtgcctttttaaataatttagctGTAATCCTACACGGTAATTCAAAGTTTACAGAAATGTATTTCGTTTTTTTTGCTCCacgtttttatatttatgttgcaGTAACAATTTTGCACTCTGTGTGACGCTGTTGGTTAGTGTGTGAAGGCTTTAAATTCTCAGGGAATGATCCTCCCTATATTGTGACATCACTGAGACTTCGCACTCTCTCGTTCATTCGGGATAAACTATACAGACCGAGAACACGTACGTTTTAACAGAAGAttcctattttttttgctgaatgaaGAAGCTCTGTTCGTCCCATGATTATGACATCACTGAAGAAAATAAATCGTCTTGTCCTTTTTTCCTTTGTCCTGGCGGTTGCACACGGGCAGGTCCGTTATTCTATTCCTGAGGAGATGAATAAGGGATCTGTTGTGGGAAACATCGTGCAGGATCTCGGGTTGGATGTTAAAAGACTGAAATCTGGTCGAGCGCGGATCTTTACAGAGGATAGTCGTGAGTACATCGGTCTAAATGTAGATAAAGGGACTCTGGTAGTGAGAGACAGGATAGATAGAGAGGAGCTGTGCGCCCAGGTTACTCCGTGCTCTTTACATTTTCAGATCATTCTAGAAAGCCCAATGGAGCTGCATAGAATCGATGTTGAAATATTAGATGTTAATGATCATTCTCCTGTGTTTACAAGAAATGAAATTAATTTCCAAATTAGTGAATCGGCTATGCCTGGTGCAAAATTTTCTTTAGATAATGCACATGATCCTGATGTAGGAATGAATGCTCTCCAACGATACACTCTCAATCCCACAGAATATTTTTCTCTGAAAGAAATCATTGGTAATGATGGGCTGAAATACGTAGAAATGGTGTTACAAGCATCACTTGACAGAGAGGACCGAGAGGAGCATACGctgtccttaatggcatttgATGGAGGCAGCCCACAAAAATCTGGTACTGTTAAAATAACCATTACAGTACTGGATGCAAACGACAATGCTCCTGTGTTCAGTTTGCCTGTATATCGTGTTACAATGCAAGAGAATTCGCCCAGAGGCACATATGTAGCAACAGTAGCCGCTACAGATAAAGATAAAGGGACAAACGCCCAGGTGACTTATTCATTTTCACAGAGTACAGGAAAGAATTTGGATTTGTTCAATATTGATTCAAAAACGGGCGATATCACTGTTACCAGTGAGCTGGACTTCGAGAAGTCAAAgcattttcaaataaatgttgAAGCAACAGATAAAGGAGGGCTAACAGATTCTTGTAAAGTAGTGATTGAAATCACTGACGTTAACGACAACGCACCCGTCATAAGCTTGATttctttttctaattcagtACCAGAAAACTCCCCTCCAGAGACAGTGATAGCCATGGTTAATGTAAAAGATTTAGATTTTGGGAAAAATGGACAGGTAAAATGTTCAATTGATCCAAATTTACCGTTTAAAATACAATCGTCCTCATCCAATTTCTACAGTGTTGTAACTGATCAGGTTTTGGATCGAGAGACTAAACCTgagtataatataacaataagaGCTACTGATGATGGTTCTCCTTCATTTTCtaccaataaaacattaaatctgaAAATATCTGATGTGAATGACAACGCCCCTCTGTTTCAGCATCAGTCATACACTGCTTATGTGCTGGAAAATAACACACCTGGAGTGTCTATATTCGCAGTGACAGCAGCTGATAAAGATTCTGGTAACAACGCGCGTATTTCCTATTTTCTTGAGGATGTTCTCGTGAATGGAGTTTCAGCCTCGACTCATATTTCAGTGAATGCAGAGTGCGGAGCAATTCTTGCTGTTCGCTCTTTTGATTACGAGCAAACCAAAGAGTTTCATATTCGTGTAAAAGCGCAAGACGGAGGAAATCCTCCTCTCAGCAGCAATGTGAGTGTGAAAATAGTGATTCAGGACCAGAACGACAACGCGCCTCAGGTTCTGTATCCAGTGCAGACTGGTGGCTCTGTGGTGGCTGAAATTGTGCCTCGTTCAGCAGAGGTGGGATATCTCGTGACCAAAGTGGTGGCTGTTGATGTGGACTCTGGACAGAATGCCTGGCTCTCATATAAACTGCAGAAAGCTACAGACAGGGCGCTGTTTGAAGTGGGCTTACAGAATGGAGAAATAAGAACTGTGCGCCAGGTGACCGATAAAGATGCTGTGAAGCAGAAGCTCACTGTTGTAGTGGAGGACAACGGACAGCCCTCTCGTTCAGCTACAGTCAATATTAACGTGGCGGTGGCGGACAGTTTCCCTGAAGTGCTCTCGGAGTTCACTGACTTTACGCATGACAAGGATTACAACGACAACATGACTTTTTATCTAGTCTTGGCCTTGGCTGTTGTTTCCTTTCTGTTCATCGTGTCCATCATAGCCATACTTTTAGTTAAATGCTACAGATGGAGGCGCGAGAGGATGTTTTACAAATCCGGTGCCAATCTGCCAGTTATTCCATATTATCCACCTCTTTATGCAGACGTAGGGAGTACAGGAACATTACAGCATGTGTATAATTATGAGGTATGCAGGACGACTGACTCCAGAAAGAGTGATCTGAAATATGTAAGACCTTCCAGTGAGAGCATAATGAGTTTGGATACCAGcggaacacacacactcaggcatGCGCAAAGAGACAATCTGATAAATGACTGTGAAGATCAGGTAAGATTTGGTCACTAATGAGAATTTCAAATGTACTGTAAGTAATTTAATTCCATTTAGAATTGATCGGTCTATATTAAAATGCCATTGATGTCCTCGCCACAATACAAAtttgttgattttattttattttgaatcattATATTCTCAAACGTTTGTTTTGTTGCTGTTGGTGTTGttatgccccccccccccctttcttcATTTAAGCTTATGATTGTTGTATTTACTTCTCTATAATTATAATAcgattatattttaaaatatcaaaatgttattatgtaatttattgGTAATAAATCGAGGTTTATCTCTAAGTTCCATTTTAACAATTACAAAAAGattcttttctcttttgttgTAGTATTATTTTAGAACTCTGGTCGACGCTGTTGGTCAGTGTGTGCAGGTTTTAAAGATCAGTTGTGGATCCTCCTCCACATTCTGACATCGTGCATGAAGCAGTATTACTCTGCAGTTCTGACTGAGGACCCAATGTAGAACCATAGACAAGTATTTCTTACCAGttatttcaaatatattcacATTATTTAATAGTGATAAGAGTAATTGACGCTCAATCGAATA

Function

symbol description
pcdh2g29 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in brain.

NR:

description
PREDICTED: protocadherin gamma-A11-like isoform X1

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K16495 PCDHGA; protocadherin gamma subfamily A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672083.1 True 3578 mRNA 0.39 1 9171322 9174899

Neighbor

gene id symbol gene type direction distance location
LOC111193086 LOC108438829,LOC108438834,LOC108274931,LOC108274933 coding upstream 8579 9158954 ~ 9162743 (+)
LOC111193089 NA coding upstream 12924 9156733 ~ 9158398 (+)
LOC111193051 NA coding upstream 18062 9134449 ~ 9153260 (+)
LOC111193090 LOC108438833,LOC108438834,LOC108274937 coding upstream 29240 9137787 ~ 9142082 (+)
LOC103033934 LOC105891230 coding upstream 41092 9127307 ~ 9130230 (+)
LOC107197946 LOC108438827 coding downstream 12345 9187244 ~ 9194515 (+)
LOC111188173 LOC108438827 coding downstream 21554 9196453 ~ 9225559 (+)
pcgf3 pcgf3,LOC107562381,LOC107697629,LOC107751329,LOC107587068 coding downstream 101647 9276546 ~ 9348427 (+)
LOC103043406 smu1,LOC108442464,LOC106604632,LOC107082371,LOC108243958,LOC103353869,LOC102223743 coding downstream 616372 9791271 ~ 9799463 (+)
tbc1d2 tbc1d2 coding downstream 652388 9827287 ~ 9853057 (+)
G72263 LOC108438833,LOC108438829,LOC108438834,LOC107588364,LOC107596372 non-coding upstream 19356 9142362 ~ 9151966 (+)
G72278 NA non-coding upstream 80704 9089876 ~ 9090618 (+)
LOC111193079 NA non-coding upstream 378146 8784572 ~ 8793176 (+)
G72209 NA non-coding upstream 686559 8483923 ~ 8484763 (+)
G72202 NA non-coding upstream 733227 8437870 ~ 8438095 (+)
G72285 NA non-coding downstream 52616 9227515 ~ 9227886 (+)
G72305 NA non-coding downstream 417408 9592307 ~ 9639931 (+)
G72306 NA non-coding downstream 423050 9597949 ~ 9651534 (+)
G72488 NA non-coding downstream 517770 9692669 ~ 9698998 (+)
G72496 NA non-coding downstream 533538 9708437 ~ 9710214 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 21903 9142899 ~ 9149419 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 135296 8869128 ~ 9036026 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 2285781 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 2632528 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 3214303 5871090 ~ 5957019 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 793607 9968506 ~ 9970042 (+)
G72621 NA other downstream 903680 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 1098020 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 3696585 12871484 ~ 12897931 (+)
G73533 NA other downstream 5473930 14648829 ~ 14649551 (+)

Expression


Co-expression Network