LOC111193086 (LOC108438829,LOC108438834,LOC108274931,LOC108274933)


Basic Information

Item Value
gene id LOC111193086
gene name LOC108438829,LOC108438834,LOC108274931,LOC108274933
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9158954 ~ 9162743 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672084.1
tttaatattgtcatTATATTATTAACACAAATTTCATTGTTTCGAGTTGACTAAAAGTCGTAAGATATTTAGTGCTTATTAGATTAGTGAATCCTCTGGACGTGGTGCTGAAATTGACTTTAGTCCTTCCAATAACAGTTAATTACATGGATCtctttaaactgttaaaacaaTGGTCTGTTTGAAttctttactatttatttaaatactatATTACATTGTTAAGCATGTCTCAAACTTTTGTCCCGTTATAGAGatcatttatattttcattttttcataaaTTTAGCTGTAGTCTTACATGGTAATTCAAAGATCACAACAATGTATCTAGTTTTTCTTGCtccacttttttatatttatgttgtaGTAACATTTTTGGACTCTGTGTGACGCTGTTGGTTAGTGTGAAAAGGCTTTAATTTCTCATTGAATGATCCTCCCTATATTGTGACATCACTGAGACTGCGCATTCTCTCCTTCATTCGAGATAAACTCTTCAGACCAGAACACGTACAGACGTCGTTCTTGCTCaccttttgtattttttctgtagtttaacTATACTAAATCATGCAAACACTTTTTGATCTTTAATACTGGATCATAAACATGTCAATataatctcattttttttcctttttttcctgaaaGGAGAAGCTTATGTTTCCGTGATATTACATCGCTTAAAGAGATGAAgcttcttgtctttttttcctttgtccTGGTTGTTGCGCACGGGCAGGTCCGTTATTCTATTCCTGAGGAGATGAGTAAGGGCTCTGTTGTGGGAAACATCGTGCAGGATCTCGGGTTGGATGTAAAAAGACTGAAATCTGGTCGAGCGCGGATCTATACGGAGGACAGTCGTGAGTACATCGGTTTAAATGTGGATAAAGGGACTTTGGTGGTGAAAGAGAGGATAGATAGAGAGGAGCTGTGCGGCCAGGTTACTCCGTGCTCTTTACATTTTCAGATCATTCTAGAAAACCCTATGGAGCTGCATAGAATCGATGTAGAAATATTAGATGTAAACGATCATGCTCCGAACTTTACAAGAAAGCAAATAGATTTTGAAATAAGTGAGTCAGCCACCCCCGGTGCTCGATTTTCTTTAGATAATGCACGCGATCCTGATGTAGGTTTAAACGCATTGCAGAGATATACCCTTAACCCAActgatcattttaatttaaaagaattaTCTCGTAGTGATGGCACTAAATACGTTGAGATGgttttacaaatacatttgGACAGAGAGCAACAAGAAGAGCATAAATTAATTTTGACTGCTTTTGATGGAGGAAATCCTCAAAAATCTGGAACAGTTAAAATAACCGTCGTTGTTATTGATGCAAACGACAATCCTCCCGTGTTCAGTCAGCCTGTTTACCGAGTGTCTTTACCAGAAAATGCTCAAAAGGGCAGTTCAGTAGTGACTGTACGCGCTACCGACAAGGACAAAGGCTCCTATGGTGAGGTTTCATATTCATTTTCACAGAGCACTGGAAAAGCTATGGATTTTTTCACCGTTAATTCAGATACGGGAGACATTCGAGTTAATGGAATCTTAgattttgaaaaatctaaacagTACGAACTTAATGTAAAAGCAATGGACAATGGTGGATTAACTGACACCAGTAAAGTGCTAGTTGAAATCACTGATGTTAATGATAATGCACCTGTTATCAGTGTTATCTCATTTTCCAATCCCATACCAGAAGATTCCGCCCCGGAGACTGTTATAGCGATGCTCAATATTAAAGACATCGACTTCGGTAAAAACGGTCAGATTAGATGTTTAGTGGATTCAGATTTACCATTTCGCATCAAATCCTCTTCCTCTAATTTCTACAGTTTAATCACTAATCAGTTTTTAGACCGAGAGAAATGTtctgaatataatataacaataacagcTACTGATGAGGGTTTTCCTTCATTCTCTACCAATAAAACTCTCAATCTGAAAATATCTGATGTAAATGACAACGCCCCTCTGTTTCAGCATCAGTCATATACCGCTTATGTGCTGGAAAATAACACACCTGGAGTGTCTATATTCGCAGTGACAGCAGCTGATAAAGACTCTGGTAACAACGCGCGCATTTCCTATTTTCTTGAGGATGTTCTCCTGAATGCAGTATCAGCCTCAACATATATTTCAGTGAATGCAGAGAGCGGAGAGATTCTTGCTGTTCGCTCTTTTGATTACGAGCAAATCAAAGAGTTTCACATTCGTGTAAAAGCGCAGGACGGAGGAAATCCTCCTCTCAGCAGCAATGTGAGTGTTAAGATAGTGATTCAGGACCAGAACGACAACGCGCCTCAGGTTCTGTATCCAGTGCAGACTGGTGGCTCTGTGGTGGCTGAAATGGTGCCTCGTTCAGCAGAGGTGGGATATCTCGTGACCAAAGTGGTGGCTGTTGATGTGGACTCTGGACAGAATGCCTGGCTCTCATATAAACTGCAGAAAGCTACAGACAGGGCGCTGTTTGAAGTGGGCTTACAGAATGGAGAAATAAGAACTGTGCGCCAGGTGACCGATAAAGATGCTGTGAAGCAGAAGCTCACTGTTGTAGTGGAGGACAACGGACAGCCCTCTCGTTCAGCTACAGTCAATATTAACGTGGCGGTGGCGGACAGTTTCCCTGAAGTGCTCTCGGAGTTCACTGACTTTACGCACGACAAGGATTACAACGACAACCTGACTTTTTATCTAGTCTTGGCCTTGGCTGTAGTTTCTTTTCTCTTCATCGTGTCCGTTATAGCTATACTGTCAGTCAAATGCTACAGATGGAGACGTGAAAGGATGTTTTACAAATCAGGTTCCAATCTGCCAGTTATTCCATATTATCCACCTCTTTACGCAGACGTAGGGGGGACAGGAACTTTACAGCATGTGTATAATTATGAGGTCTGCAGGACGACTGACTCCAGAAAGAGTGACCTGAAATACATGAGACCAACTCAGAGCATCATTAGTCTTGATACAAATGGAACACAGACTCTCACACATGCGCAGAGGGAGAAATTAATAAGTGACGATTTTGAAGATCAGGTAAGGGttggttattattgttattaataatagtCATCATAATTGTCATCATTTATAGTTTTCATATTATTAATACACATTTCCCTTCGTGTTTTCAAGTTGACTaacagttctaaaaaaaaatgtaatattcactGGATGTGTTAAGCCTCTGTCCTTGGTGCTGAAATTGACGTTATTTCTTCCAAATACAGTTCATAGCATGGGTCtctttaaattgttaaaataattatCTGTTTAAGTTTAATAcaatttatgtaaatattatatttaattttaagcatgtcTCTAAATTTCGTCTCGTTTTATAGATCATTTATATAATTGCCTATTTAATACATGTAGTTCTAGCCTTACACGGTAATTCAAAGGTCACTACACGTATTCCGTTTTCTTGCTCCacgtttttatatttatgttgcaGTAACATTTTTGCACTCTGTGTGACGCTGTTGGTTAGTGTGTGAAGGCTTTACATTCTCAATGAATGATCCTCCCTATATTGTGGCATTACTGAGTTtgcgcactctctctttcattcgAGATAAACTCTACAGACCGAGAACACGCACAGACATCGTTCTTTCTCACCTTCTATTTTTCTTCTCAGTTTTATTATACTGAACCATGAACACCTTTTAGTCTGCAAGTTtggtttataaacatttcaACAGAAGATTTCTTTCGTATTTGTTTGCTGAAAGAAGAAACTTTCTTCTACCC

Function

NR:

description
PREDICTED: protocadherin gamma-A11-like isoform X1

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K16495 PCDHGA; protocadherin gamma subfamily A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672084.1 True 3790 mRNA 0.38 1 9158954 9162743

Neighbor

gene id symbol gene type direction distance location
LOC111193089 NA coding upstream 556 9156733 ~ 9158398 (+)
LOC111193051 NA coding upstream 5694 9134449 ~ 9153260 (+)
LOC111193090 LOC108438833,LOC108438834,LOC108274937 coding upstream 16872 9137787 ~ 9142082 (+)
LOC103033934 LOC105891230 coding upstream 28724 9127307 ~ 9130230 (+)
LOC111193087 NA coding upstream 36163 9120530 ~ 9122791 (+)
LOC103034588 pcdh2g29,LOC108438829,LOC108438834,LOC107596372 coding downstream 8579 9171322 ~ 9174899 (+)
LOC107197946 LOC108438827 coding downstream 24501 9187244 ~ 9194515 (+)
LOC111188173 LOC108438827 coding downstream 33710 9196453 ~ 9225559 (+)
pcgf3 pcgf3,LOC107562381,LOC107697629,LOC107751329,LOC107587068 coding downstream 113803 9276546 ~ 9348427 (+)
LOC103043406 smu1,LOC108442464,LOC106604632,LOC107082371,LOC108243958,LOC103353869,LOC102223743 coding downstream 628528 9791271 ~ 9799463 (+)
G72263 LOC108438833,LOC108438829,LOC108438834,LOC107588364,LOC107596372 non-coding upstream 6988 9142362 ~ 9151966 (+)
G72278 NA non-coding upstream 68336 9089876 ~ 9090618 (+)
LOC111193079 NA non-coding upstream 365778 8784572 ~ 8793176 (+)
G72209 NA non-coding upstream 674191 8483923 ~ 8484763 (+)
G72202 NA non-coding upstream 720859 8437870 ~ 8438095 (+)
G72285 NA non-coding downstream 64772 9227515 ~ 9227886 (+)
G72305 NA non-coding downstream 429564 9592307 ~ 9639931 (+)
G72306 NA non-coding downstream 435206 9597949 ~ 9651534 (+)
G72488 NA non-coding downstream 529926 9692669 ~ 9698998 (+)
G72496 NA non-coding downstream 545694 9708437 ~ 9710214 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 9535 9142899 ~ 9149419 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 122928 8869128 ~ 9036026 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 2273413 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 2620160 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 3201935 5871090 ~ 5957019 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 805763 9968506 ~ 9970042 (+)
G72621 NA other downstream 915836 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 1110176 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 3708741 12871484 ~ 12897931 (+)
G73533 NA other downstream 5486086 14648829 ~ 14649551 (+)

Expression


Co-expression Network