LOC103033934 (LOC105891230)


Basic Information

Item Value
gene id LOC103033934
gene name LOC105891230
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9127307 ~ 9130230 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672085.1
AGATGTTTAACTAGTGTTATTCCTTTACAATGTTACGATTAATGGGGCTGTGGGGACTTCCCCGTTGTCTCTGTCCAGGGTTCTGAAAGGTATTAGTGCTTGGAATGTCTTAAAATATCTTTGTTAAATCACATACCTTATTTGAAACTGGCTTTTGCCGACTCACTCTCACTTTCCTGTATGTGAAGCATTCTTGTTCACATTTCATCTTCGAAACTGAACTCTTTTTTTACTGATGACTGCTGTAAATAAGTTTTTCTATTGCTGTGGAACAAATGTTAAGAGGGATACTTTATATTGAGTGCAATACATACTTCTAAACTCTAAGTGCCGCTGTTGTCCAGTGTTTGTGGTTAATATGTAAATTGGTAGCAGCCCCTCCCAGCTATCTGAACATTTTATGTACGCAACACTCAGGGTTGAGATGAAACACGCCTGGACGAGTACAAATATCGATTTTTAAAGGACAtgctttaaacatttttgtttgtatCACAATTTTCtgtgaatcttttttttatcgAATATAGCACGCTTCCTCTCTTGACTGTCTGCCTATTCCACTGGATCTTTTTTAAAGTGTCGCAGAGGAAGAAATCGAAAAGAACAATGGCGCGGCAAGTACTGCTGTTTGtgtatctcctctctctcaatTCAGTGCGCGGACAGGTCAGTTACTCCATTCCTGAAGAAATGCCGAAAGGATCTTTAGTCGGTAACATAGCGCAagatttaggtttagatttaaagAGACTGAAATCAGGTAAAGCTCGTATTTATACAGGAGACAGCGCTGAATACATCGAGCTGAATAAAGAGAGGGGACTCCTCCTTATTAAAGAGAGAATAGACAGAGAAGCTCTGTGTGGACAGACAATGCCGTGCGCTCTACATTTTCAGATTATTTTAGAGAATCCGATGGAATTGTTCAGAGTTACTATTGAAATAACCGACATTAATGATAATTCACCAGTCTTCGAGAAATCAGAAATTAAATTTCGTATAAGTGAGTCAGCAGTGATTGGTAGTAAATTTGCGCTGGAAAGGGCTATGGACCCAGATGTCGGTGTGAACGACCTTCAGAGCTATGCTCTTAGTCCTAAAGAAAATTTCAAtctgaaaattaaaaatcaacctGATGGGACTAAACTGATTGAAATGGTTTTACAAACAGCGCTTGACAGAGAAAAACGGGACGAGATTTATTTAATTCTGACTGCCGTAGATGGTGGTGACCCCAAATTATCCGGTACTGCTCAAATCTATGTAACAGTGTTGGATGTAAATGACAACGCGCCTATTTTTTCACAGCCTCTCTATAAATCCACAGTGAACGAAAATGCTCTTAAAGGAACAATCCTTGGTCAAGTGAGCGCCTCAGATGCTGATCGCGATggtaacggtgatatcatttatAGCATAACCAATACAATGGACAATGTACGTGATATATTTGACGTAAATGCAAACAATGGAGAGATAATGGTAAGAGGACAAATTGATTTTGAAAAGGCTCGTCACTATGAAATACATATTCAAGCTACTGATGAGGGTGGGCTCACAGACTCGTGTAAAATGCTAGTTGACGTTTTAGATGTGAATGATAATATTCCATCAGTCAATGTGCTTTCGATGTCCAAAACAATAATTGAAAATTCTAAACCAGGTACAGTTGTGGCTATGTTGAATATTCAGGATCCTGATTCAGAACAAAATGGACAAATTACTTGTTCAATTAACGATAATCTTCCTCTAGCGTTGAAATCAGcatctgatcatttttatagCCTTGTCACAGACACCGACTTAGACCGAGAAAGAGAGTCTGGGTATAATATCAGTATCATGTGCTCTGATGAGGGGTCTCCGTCTCTCTCCAGCAGCGTCACTCTCACCTTACAGATATCAGACGTTAATGATAACGCTCCTGTTTTTGAGAGGAGCTCATATGTGGCCTCTATTTCAGAAAATAACACACCAGGTCTCTCCATAATCAGAGTCAAAGCCAGAGACGCAGACTGGAACCAGAATGCGCGTGTTTCTTACATTCTGCAGGACTCGTCCGTAAACGGTGTTTCTGTCTCCTCTTATGTTTCTGTCAGTGCTGATAGTGGCATTATCCACGCAGTGCGTTTTTTTGACTACGAGCAAATCAAGGATTTTCAATTTCGCGTAATAGCTCAAGATGGAGGCTCCCCTCCTCTCAGCAGCAATGTGAGTGTGAAGATAGTAATTCAGGACCAGAACGACAACGCACCTCAGGTTCTGTATCCAGTGCAGACTGGTGGCTCTTTGGTGGCTGAAATTGTGCCTCGTTCAGCAGAGGTGGGCTATCTCGTGACCAAAGTGGTGGCTGTTGATGTGGACTCTGGACAGAATGCCTGGCTCTCATATAAACTGCAGAAAGCCACGGACAGGGCGCTGTTTGAAGTGGGCTTACAGAATGGAGAAATAAGAACTGCGCGTCAGGTGTCCGATAAAGATGCTGTGAAGCAGAAACTCACTGTTGTAGTGGAGGACAACGGACAGCCCTCTCGTTCAGCTACAGTCAATATTAACGTGGCGGTGGCGGACAGTTTCCCTGAAGTGCTCTCGGAGTTCACTGACTTTACGCACGACAACGACAACCTGACTTTTTACCTGGTCTTGGCCTTGGCTGTAGTGTCCTTTCTCTTCATCGTGTCCATCATAGCCATACTGTCAGTCAAATGCTACAGATGGAGACGTGAGAGGATTTTTTCACAAATCCGGTGCCAATCTGCCAGTTATTCCATATTATCCACCCTTTTACGCAGACGTAGGGGGTACAGGAACTTTACAGCACGTGTATAATTATGAGGTCTGCAGGACGACTGACTCAAGAAATAGTGATATGAAACATGCCAGATCTTCCAGTGACAGCATCATTAGTTTGGACACCAGTG

Function

NR:

description
PREDICTED: uncharacterized protein LOC105891230

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672085.1 True 2924 mRNA 0.42 1 9127307 9130230

Neighbor

gene id symbol gene type direction distance location
LOC111193087 NA coding upstream 4516 9120530 ~ 9122791 (+)
LOC103033622 LOC108438830 coding upstream 27077 9097379 ~ 9100230 (+)
LOC107197811 NA coding upstream 33830 9092223 ~ 9093477 (+)
LOC111193080 NA coding upstream 153901 8970578 ~ 8973406 (+)
LOC103029169 LOC108430921 coding upstream 165479 8958444 ~ 8961828 (+)
LOC111193051 NA coding downstream 4219 9134449 ~ 9153260 (+)
LOC111193090 LOC108438833,LOC108438834,LOC108274937 coding downstream 7557 9137787 ~ 9142082 (+)
LOC111193089 NA coding downstream 26503 9156733 ~ 9158398 (+)
LOC111193086 LOC108438829,LOC108438834,LOC108274931,LOC108274933 coding downstream 28724 9158954 ~ 9162743 (+)
LOC103034588 pcdh2g29,LOC108438829,LOC108438834,LOC107596372 coding downstream 41092 9171322 ~ 9174899 (+)
G72278 NA non-coding upstream 36689 9089876 ~ 9090618 (+)
LOC111193079 NA non-coding upstream 334131 8784572 ~ 8793176 (+)
G72209 NA non-coding upstream 642544 8483923 ~ 8484763 (+)
G72202 NA non-coding upstream 689212 8437870 ~ 8438095 (+)
G72192 NA non-coding upstream 707002 8420064 ~ 8420305 (+)
G72263 LOC108438833,LOC108438829,LOC108438834,LOC107588364,LOC107596372 non-coding downstream 12132 9142362 ~ 9151966 (+)
G72285 NA non-coding downstream 97285 9227515 ~ 9227886 (+)
G72305 NA non-coding downstream 462077 9592307 ~ 9639931 (+)
G72306 NA non-coding downstream 467719 9597949 ~ 9651534 (+)
G72488 NA non-coding downstream 562439 9692669 ~ 9698998 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 91281 8869128 ~ 9036026 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 2241766 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 2588513 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 3170288 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 3448433 5672718 ~ 5678874 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 12669 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 838276 9968506 ~ 9970042 (+)
G72621 NA other downstream 948349 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 1142689 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 3741254 12871484 ~ 12897931 (+)

Expression


Co-expression Network