LOC111193090 (LOC108438833,LOC108438834,LOC108274937)


Basic Information

Item Value
gene id LOC111193090
gene name LOC108438833,LOC108438834,LOC108274937
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9137787 ~ 9142082 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672088.1
CCTAGCCTCTGTGTGGCGCTGTTTGATAGTGTGAAAGCTTTAAACTGTCATTGCTTGATCCTCCCTCAACCGTGAGATCACTGATACTGCGCATGCTCTATGTAATTCGAGGCAAAATAGGCAGATGAACAGACGTGCTTCTTGCTTACCGTCTATGTTTCCGATTCAGTTTTACTATAGAACAATTCGCAAATATTTCGTTTaatctacaattttttttacatttcaatatAAGCTAGCTTTGTTCTTTGTCGACTGAAAGACGACGCTCTTGCACCCGTCAAATGACATCTCTGAAGAAAATGAGTCTTTtactccttttttcttttgtccTGGTTGTTGCGCACGGACAGGTCCGTTATTCTATTCCTGAGGAGATGAATAAGGGATCTGTTGTGGGAAACATCGTGCAGGATCTCGGTTTGGATGTTAAAAGACTGAAATCTGGTCGAGCGCGGATCTTTATGGAGGACGGTCGTGAGTACATCGGTCTAAATGTGGATAAAGGGACTCTGgtaataaaagagagaatagaTAGAGAGGAGTTGTGCGGCCAGATTACTCCGTGCTCTTTACATTTTCAGATAATTTTAGAAAACCCGATGGAGCTGCATAGAATCGATGTagaaatattagatattaatGACCATGCTCCTGTTTTTGAAAAGAAAGACGTCGTTATTGAAATTAAGGAATCTATGCTTACGGGGTCTCTGTTTTCTTTAGATAATGCACATGATCCCGACGTTGGAGAGAATACACTGCAGAGATACACCCTCAATCCAACCGATCATTTCACTTTAAAAGAATTATCTCGGAGTGATGGGACTAAATATGTTGATATGgttttacaaacacatttagacagagagaaacacgaAGAGCACCAATTAATACTGACAGCTTTTGATGGAGGGAACCCTCAAAAATCTGGAACAGTTAAAATTACGATTGTTGTTATTGATGCAAACGATAATCCTCCCGTTTTCAGTGAGCCTGTCTACCGTGTGTCTTTACCAGAAAATGCAGCTAAAACAAGTATAATACTGACCGTGCGTGCAACCGACAAGGATAAAGGCTCTTATGGCGAGATTATATACTCATTTTCACAAAACACCGGAAAAGTGGTGAATATTTTACCATAGATTTGGAGACAGGTGAAATTCGAGTTAATGGTCCTTTAGATTATGAAAAA

Function

NR:

description
PREDICTED: protocadherin gamma-A10-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672088.1 True 1195 mRNA 0.40 2 9137787 9142082

Neighbor

gene id symbol gene type direction distance location
LOC103033934 LOC105891230 coding upstream 7557 9127307 ~ 9130230 (+)
LOC111193087 NA coding upstream 14996 9120530 ~ 9122791 (+)
LOC103033622 LOC108438830 coding upstream 37557 9097379 ~ 9100230 (+)
LOC107197811 NA coding upstream 44310 9092223 ~ 9093477 (+)
LOC111193080 NA coding upstream 164381 8970578 ~ 8973406 (+)
LOC111193089 NA coding downstream 14651 9156733 ~ 9158398 (+)
LOC111193086 LOC108438829,LOC108438834,LOC108274931,LOC108274933 coding downstream 16872 9158954 ~ 9162743 (+)
LOC103034588 pcdh2g29,LOC108438829,LOC108438834,LOC107596372 coding downstream 29240 9171322 ~ 9174899 (+)
LOC107197946 LOC108438827 coding downstream 45162 9187244 ~ 9194515 (+)
LOC111188173 LOC108438827 coding downstream 54371 9196453 ~ 9225559 (+)
G72278 NA non-coding upstream 47169 9089876 ~ 9090618 (+)
LOC111193079 NA non-coding upstream 344611 8784572 ~ 8793176 (+)
G72209 NA non-coding upstream 653024 8483923 ~ 8484763 (+)
G72202 NA non-coding upstream 699692 8437870 ~ 8438095 (+)
G72192 NA non-coding upstream 717482 8420064 ~ 8420305 (+)
G72263 LOC108438833,LOC108438829,LOC108438834,LOC107588364,LOC107596372 non-coding downstream 280 9142362 ~ 9151966 (+)
G72285 NA non-coding downstream 85433 9227515 ~ 9227886 (+)
G72305 NA non-coding downstream 450225 9592307 ~ 9639931 (+)
G72306 NA non-coding downstream 455867 9597949 ~ 9651534 (+)
G72488 NA non-coding downstream 550587 9692669 ~ 9698998 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 101761 8869128 ~ 9036026 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 2252246 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 2598993 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 3180768 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 3458913 5672718 ~ 5678874 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 817 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 826424 9968506 ~ 9970042 (+)
G72621 NA other downstream 936497 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 1130837 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 3729402 12871484 ~ 12897931 (+)

Expression


Co-expression Network