LOC107197811


Basic Information

Item Value
gene id LOC107197811
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9092223 ~ 9093477 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672090.1
aattgtttaagtaaattcaacttatccgggcttacactGTAggacaaatgtttaaaataccATTTCACATTAGGTTAATAGAATGTATTCCTTGTGTcaatgtattacattttcaacTCTAATTCGAGGACACAGTTAATGAGATATTCCGCTTTTAGTCGCGTGAAACCTGCTTGTTAATTTACTTTTCACTGCTCCACTATTGATGAGTGTTACAACGTGAGGATTTGCAACGAATGGtcgctgtccatggtgctgcaAATGCAATACTCTCACAGTCGTTTCTAAATGCGTATCTGTAAGGACTGTTTTCTAttgcaaagtgaatttaatcGAGCTTCATTAAAGTTTATTAAGTGTAGGACACGTGGAAACTGTGAATGTTTTTATTGCTGTAGCAGTAGTGTTTTTGTATTATCAGATTCTGTTATTGAACCTCTTGGTGTCGCTGTGCACCTTCAAAGCAACGTGTATTTCTTTTCTCCACCCATTTATTGCAACTAGGCAGATATATATTGTTGCGACGTTTGGTGTGCTTTGAACTCTTTCATTCTGTAATCAGCAACGTTTTGTCTCCAAACTAAATTACGTAGTTTTACAAGCCGTTTTATAACGGTGGGAATCATAGCGTGATGTTTTTCAAGACGATATTTAATGGATCCTCTGTGGGTGGATTTTGTCTTTGTTTCTCCGGCTTCTCAATGATATACGTAGCTTATGGAGACGCGAGCTATTCTATACCGGAGGAAATGAAACGCGGATCTGTGATTGGAAATATAGCCAAGGATCTCGGACTCCATGTAAACAGACTACCGGCGCGCAATGCCCGCATCGATTCTACAGGTAAAGGAAAACGCTACTGCGACATTAATGTGAATACTGGAGAACTGACTGTGGCAGAAAGAATTGACAGAGAGGGGCTTTgtggaaagaaatctgtgtgcGTTATAAAACAAGAGCTGGTCCTGGAAAATCCACTGGAGCTTCATCTCATCAGTCTACACATTCAAGATATTAACGACAACTCACCTATGTATTCAAGGAGCGAAATTAAAATGGAAATCGCAGAGTCTGTTGATAAAGGCGCCCGTTTTCTACTGGAGGAAGCGACCGACGAAGACATTGGGCAGAACTCCGTTCAAACCTACACTCTACAGAATAACCACCATTTCGTTTTATCCGTCAAGACAGTTCAGCAGGTGGAAAATATGCGGAGTTAGTGTTAGATAAAGAGTTAGATCGTGAGCAGGTGCAG

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672090.1 True 1255 mRNA 0.40 1 9092223 9093477

Neighbor

gene id symbol gene type direction distance location
LOC111193080 NA coding upstream 118817 8970578 ~ 8973406 (+)
LOC103029169 LOC108430921 coding upstream 130395 8958444 ~ 8961828 (+)
LOC111193082 LOC108430922 coding upstream 161982 8927031 ~ 8930241 (+)
LOC111193084 LOC108430922 coding upstream 188129 8902284 ~ 8904094 (+)
LOC111193081 LOC108275114,LOC107588388 coding upstream 195405 8894211 ~ 8896818 (+)
LOC103033622 LOC108438830 coding downstream 3902 9097379 ~ 9100230 (+)
LOC111193087 NA coding downstream 27053 9120530 ~ 9122791 (+)
LOC103033934 LOC105891230 coding downstream 33830 9127307 ~ 9130230 (+)
LOC111193051 NA coding downstream 40972 9134449 ~ 9153260 (+)
LOC111193090 LOC108438833,LOC108438834,LOC108274937 coding downstream 44310 9137787 ~ 9142082 (+)
G72278 NA non-coding upstream 1605 9089876 ~ 9090618 (+)
LOC111193079 NA non-coding upstream 299047 8784572 ~ 8793176 (+)
G72209 NA non-coding upstream 607460 8483923 ~ 8484763 (+)
G72202 NA non-coding upstream 654128 8437870 ~ 8438095 (+)
G72192 NA non-coding upstream 671918 8420064 ~ 8420305 (+)
G72263 LOC108438833,LOC108438829,LOC108438834,LOC107588364,LOC107596372 non-coding downstream 48885 9142362 ~ 9151966 (+)
G72285 NA non-coding downstream 134038 9227515 ~ 9227886 (+)
G72305 NA non-coding downstream 498830 9592307 ~ 9639931 (+)
G72306 NA non-coding downstream 504472 9597949 ~ 9651534 (+)
G72488 NA non-coding downstream 599192 9692669 ~ 9698998 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 56197 8869128 ~ 9036026 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 2206682 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 2553429 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 3135204 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 3413349 5672718 ~ 5678874 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 49422 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 875029 9968506 ~ 9970042 (+)
G72621 NA other downstream 985102 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 1179442 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 3778007 12871484 ~ 12897931 (+)

Expression


Co-expression Network