pcgf3 (pcgf3,LOC107562381,LOC107697629,LOC107751329,LOC107587068)


Basic Information

Item Value
gene id pcgf3
gene name pcgf3,LOC107562381,LOC107697629,LOC107751329,LOC107587068
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9276546 ~ 9348427 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672093.1
GCATGCGCAGCATGGCCTGGCGCTTCGGCCTGTATCGGAAGCGCTCGGCGAATTTCGCCTCTTTGTTTTACTGATAGTGGATTTAACTCGGATTCGAGCCCTGATATCCACCGGAGTGCTCCGCGGAGAAACAGGTGTGTGAGCAGTGGTCCAGAATGCGGAGTTAGTATCGGTCTCCATCTGCTAGAAGAAGCCTGGCTGCCTCATTCTCTGCAGTAAACACATGGCGGCAATAGGGAACCCAGAGATGCTCACAAGAAAGATTAAATTGTGGGACATCAACGCCCACATAACGTGTCGCCTGTGTGAGGGGTACCTAATCGACGCCACTACTGTAACCGAGTGCTTACACACATTCTGCAGGAGCTGTTTAGTGAAGTATCTGGAAGAGAACAACACGTGTCCCACATGTAGGATTGTCATTCACCAGAGCCACCCACTGCAGTATATCGGcCATGACAGAACAATGCAAGACATCGTCTACAAGTTGGTGCCAGGACTGCAGGAAGCGGAGTTGAGAAAGCAGAGAGATTTCTATCAGAAGTTGGGTATGGAGGTGCCTGGAGACATCAAAGGAGAGCTGTGCAACATGAAGCCCCACCTAGATACACAGCGCAACGgTGACGTAAAACCAGAGGATGGAGCCAATAAGGAAGGAGAGGAGAAGCCAGAAGAAGATAATGATTATCATCGCAGCGATGAACAAgTGAGTATCTGTCTGGAGTGTAACAGCAGTAAGCTGCGTGGACTGAAGCGTAAATGGATCCGGTGCTCAGCACAGGCCACAGTCCTCCACCTAAAGAAATTCATCGCCAAGAAGCTCAACCTGACATCCTTTAACGAGCTGGATATTTTATGCAATGAAGAAATCTTGGGCAAGGACCACACTTTAAAATTTGTTGTCGTGACGAGATGGAGATTTAAGAAATCCCCTCTACTCCTGCATTACAGACCTAAAATGGATTTGCTGTAGTTGGACAAAACTGGTTGTTTTTGGCCCAGTGGCCCAGGACTGTGCAACACAACGCTATTTATGCAGAGACTATCAATGCCCGCACCAAACAGACCCCTGTCCCAGGAGTCGAACCATACACGAGCCAGCAAACAACGAAAACCAGCTCAGTTACTGCTCCACACTGACGGCTTAGCCAAACAACCACAGgctttttaggtttttagtttattctttttttttttccttctttttctgttCGTCCTGGATATGTGaagactgagagacagagaaaaagagagagagagcatatatttatacttttgtacagaagagagagagacacacatgGACTCGAGACACTACTGGTGCtctgtttacacacacaacaaacgAATCAACTGGACGAGAGATGACCGAACAGTTTTTATACAGAGTGGTGGACGGCAGAACGGATGGACGGACGCCTGGGCGGGCGGGCGGGCGG

Function

symbol description
pcgf3 Predicted to enable metal ion binding activity. Predicted to be involved in histone H2A-K119 monoubiquitination; inactivation of X chromosome by genetic imprinting; and regulation of transcription by RNA polymerase II. Located in nucleoplasm. Part of PcG protein complex.

NR:

description
PREDICTED: polycomb group RING finger protein 3

GO: NA

KEGG:

id description
K11488 PCGF3; polycomb group RING finger protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672093.1 True 1439 mRNA 0.48 10 9276546 9348427

Neighbor

gene id symbol gene type direction distance location
LOC111188173 LOC108438827 coding upstream 50987 9196453 ~ 9225559 (+)
LOC107197946 LOC108438827 coding upstream 82031 9187244 ~ 9194515 (+)
LOC103034588 pcdh2g29,LOC108438829,LOC108438834,LOC107596372 coding upstream 101647 9171322 ~ 9174899 (+)
LOC111193086 LOC108438829,LOC108438834,LOC108274931,LOC108274933 coding upstream 113803 9158954 ~ 9162743 (+)
LOC111193089 NA coding upstream 118148 9156733 ~ 9158398 (+)
LOC103043406 smu1,LOC108442464,LOC106604632,LOC107082371,LOC108243958,LOC103353869,LOC102223743 coding downstream 442844 9791271 ~ 9799463 (+)
tbc1d2 tbc1d2 coding downstream 478860 9827287 ~ 9853057 (+)
LOC103044029 LOC108442474,LOC108275029,LOC107680923,LOC107660187,LOC107587072 coding downstream 561979 9910406 ~ 9957528 (+)
thg1l thg1l,LOC103154062,LOC106912903,LOC107751338 coding downstream 625797 9974224 ~ 9977824 (+)
irf7 NA coding downstream 716989 10065416 ~ 10073101 (+)
G72285 NA non-coding upstream 48660 9227515 ~ 9227886 (+)
G72263 LOC108438833,LOC108438829,LOC108438834,LOC107588364,LOC107596372 non-coding upstream 124580 9142362 ~ 9151966 (+)
G72278 NA non-coding upstream 185928 9089876 ~ 9090618 (+)
LOC111193079 NA non-coding upstream 483370 8784572 ~ 8793176 (+)
G72209 NA non-coding upstream 791783 8483923 ~ 8484763 (+)
G72305 NA non-coding downstream 243880 9592307 ~ 9639931 (+)
G72306 NA non-coding downstream 249522 9597949 ~ 9651534 (+)
G72488 NA non-coding downstream 344242 9692669 ~ 9698998 (+)
G72496 NA non-coding downstream 360010 9708437 ~ 9710214 (+)
G72500 NA non-coding downstream 369246 9717673 ~ 9717915 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 127127 9142899 ~ 9149419 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 240520 8869128 ~ 9036026 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 2391005 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 2737752 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 3319527 5871090 ~ 5957019 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 620079 9968506 ~ 9970042 (+)
G72621 NA other downstream 730152 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 924492 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 3523057 12871484 ~ 12897931 (+)
G73533 NA other downstream 5300402 14648829 ~ 14649551 (+)

Expression


Co-expression Network