tbc1d2 (tbc1d2)


Basic Information

Item Value
gene id tbc1d2
gene name tbc1d2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9827287 ~ 9853057 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672096.1
gagagagagagaaactcagCACACAGGCAAGACGATGAGCAACACTTACTGgagcgcgcgcgcacacacactcatacttaTGCTCATACTTATACTCATAGGGCGTTAGATGACACGGTGTTAATGTAGTATGTTAAGAGTTCCCCTCTGTGAACATGCTGGAACAGACCGAAGAAGCGCTGAGTCTCTGCTGGAACAGCTGAAGTGGAGGAAGTAGGAGCTGTCCTCCTGTTCACCGTCTGGAGAAGCTGGAAGTTTTAACACGACAGCTGGATGGAGGGAGAAGGAGGGTGTGAAGGAAATCCCAGTGCTGATGCGTCTGGGTCACTTCCCCctcagagagaaaaacacacgcCTGGAAGTGGAGAGTGTTGCAGTGTGGTAGAGAGCCCAGAGacgacacacacagacacaatggGTCTGTCCACAGGTGACCAGGAGAAGGACGGTACCCCGGTGGATGCCCCACAACCGGACTGCATGACTATGGGCCTCAAGCCCATTGAACCTCTCTCTGGAACCAAGCTGTGTGGTTATCTCCACAAGCAGGGCGGCCCGCTCCGAGCCTGGAAGTACCGCTGGTTCACGTACGATGAGAAGAAGTGCCAGCTCTTCTACTATCGCATGGCACAGGATGTGAACCCGCTGGGCAAAGTGGAGCTGTGCAATGCCACGTTCAGCTACCCACTGCAGGGAGAGGAGGGCACCTTTCATATACAGACACCAGAGCGCACATTCATACTAAAGGCTGCAACCTGGGATCTTAAGATGTACTGGCTGCAGCAGCTACAGCTGAGAAGATGGCAGCACAGAGACCAGCTGAGTTCTGACTGCTCCAGATCCACCTCAGAGACCCTCACCCAGGATGGACAGCAGCTCTTAGATACCTGCCCTGCAAACTTCCTGCCTACAGTGAAGATTCCCTCAGGTTTGGTGGGAGAAGAAGCTGCCAGTGTGCCTGTGCAAGCCAACCCTCTCAACGTCTCCATCAAACACCCGCTAATCGAGCTTCATAACACGATGTGCAGCTTGCTTGTTCGCCGCCCATCTCAGGAACGCCGGAGTATATTTTGGTTGAATTCTTCTCTCACTGATACCTCCAAGACAGACACCTCCAATACCTCCTCAGCCAACATACCCACCATTGCCGTTTCTCCTGCCCCATTGTCTCCTCAAAGTGAAGTCCAGCCTCCAAAGGTGGACTATGAGAAGCCCAGTGATGACCCACAGGTTCCTtgttcctctttctctttgccCAATGGGAAAAAGAAGAAATGCAACTCAGCCACCTTGCCCATTGACCGCAAGGAGGCAAACGCCCTTGAACGCACCTCCCGACTCCAGCAGGAGAAACTGACTCTGGCTGAGGAAGTCAAAGCCCAGAAGGAGTTGGTGTGGTTGTTGCACAAAGCCCTGGAGTCAGCTCAGCTGGAGAAGCGTGCGTGTGCTGAGTTTCTGGCGGCTGAGGGCGAACAGGAGCGTCTGGAGCTGCTGCGGCACGGCGAGCGCTGCGCTGCTGACCTGCGGTATCAAGTGGAGCGGCTAAAGCGTGAGAATGAGGCCTTGCAGAGGAGTCTGAGCGAACGGGACGCACATGTAATTGAGCTGCAGAGCAACATAAAGCTCCTCATGGAAAAGAACCAGGCCAAGCAGCAGGTCATTGTCAAGCTCTCTGATGAACTGACAGAATGTATAGCTGACCCACAGCGCAGCATTTCCTCAGCAAGCATCAGCAAGCAAACGTTTAGACAGATGTCTCAGGAGCTGGACAGCCTCAAGGATGATATAGAAGCTTATAAGACCCAGAACAAGTTCCTAAACTCTGAGATCTATCAGCTGACTAAGCTGTGGAGGAACAGTTCAGAACAGGAGAAAAGTCTTATGGTGAAGTGTGCCTATCTGGAGGCCAGCAACTGCCAGATGGAAAGCCGGTACCTGGGGGTCCTGCGAAAATTACAGGACACGAAATTGCTGAATGCTCAGCAGAGAGACACTGTGAGGACGCTAATAGAGGACGCACTGCAAGAAAACATTAAAGATGTTATAAAGCTCGACAGCGTAAGAGAATTTGACGAGTATGGCTTTAAGCTCATCCCCGACTACGAGGTGGAGGACATGAAGCTGCTGTCTAAGATCCAGGCCCTGGAGATCCGCTCCAACAACTTGCTCCAGCAGGATATTGGGGACAAGTCTCTGTTAGCCCGCTGGACACAGTACCTGGGAGGCCGCTCCCCCGATGACCTCGCCTTATCTCCAGAGCTGAAGGGTCTCCTGCGGTGGGGCATCCCTCGTGAGTATAGGCGCCGAGTGTGGAGCTGGATGGTGCGGACCAGGACCAAGTCTGATCGGGAGCGCCATCCGGACCTCTTTCAGCAGCTGTGTGAAAAGAGCCTCACCACACCACACCCAGCATCCAGACAGATCCAGCTGGACCTACACCGCACACTGACCACCAACCAGCACTTCTCCTCCCCATCTAGCCCAGCCCTGCAGCAGCTCCACCGGGTCCTGCTGGCGTTCGCCTGGCAGAACCCTGAAGTTGGCTACTGCCAGGGACTTAACAGGCTGGCTGCTCTTGCATTGTTGGTGCTACAGAACGAAGAGGATGCGTTCTGGTGCTTAGTGACCATAGTGCAGTCCCTCATGCCTCAAGACTACTACACCAAAACTCTCTTGGGCTCTCAGGCAGACCAGCGTGTGTTTAAGGACTTTATGGCGGAGAAGTTGCCACGGCTGGTGGCCCATCTAGAGGAGCACAATGTAGACGTGTCCCTCATCACCTTTAACTGGTTTTTGGTGGTGTTTGTGGAGAGTTTACCCAGTGAAATCCTGCTTAAAGTTTGGGATGCTTTCTTCTATGAAGGCACTAAGgtgaTATTCCGATATGCTCTTGCTCTTTTCAAATACAAAGAAGAGGACATCCTTAAGATACATGACAGCACAGAAATCTACCAGTACCTCCGCTTCTTCACCAAAACTGTCACAGACAGCAGGAAGTTGATGACCATCGCCTTCACAGAGTTGAACCCGTTCCCAATGAAGCTTCTTCGGAACCGGCGAGCTCTGCACCTGCAGCGTCTGCAAGCTGAGCTCAGCGAACTGGAAAAGCTGCAGAAAGAGTATGCCTCAGAGAAAAGCCAGCGCAAAGACAAGGACCTGGACCTAAATGCAAGCGAGGATGATGAGGATGTATGGATAGTTTAAAGAGAGCTCAGGACAGGAATACAATGGCTGAATAAGGTCACCCTAAGGTcttaatacatactgtatagaACCACCTAACCATCACATAAACCCTATCAGGAcatgattagtttctcagggagtcctggggtaattttctcttttattgggggtcctctgtgatttaattcccgtctggaacgaccatgtatgtggtTTTCCTCAGACGTTTgatgagaaaattacaggctgaattacctactgtttatcgctgaactccgtggtcctccggtaattttagtcccgtccgg

Function

symbol description
tbc1d2 Predicted to enable GTPase activator activity. Orthologous to human TBC1D2 (TBC1 domain family member 2).

NR:

description
TBC1 domain family member 2A isoform X1

GO: NA

KEGG:

id description
K20165 TBC1D2; TBC1 domain family member 2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672096.1 True 3494 mRNA 0.52 14 9827287 9853057

Neighbor

gene id symbol gene type direction distance location
LOC103043406 smu1,LOC108442464,LOC106604632,LOC107082371,LOC108243958,LOC103353869,LOC102223743 coding upstream 27824 9791271 ~ 9799463 (+)
pcgf3 pcgf3,LOC107562381,LOC107697629,LOC107751329,LOC107587068 coding upstream 478860 9276546 ~ 9348427 (+)
LOC111188173 LOC108438827 coding upstream 601728 9196453 ~ 9225559 (+)
LOC107197946 LOC108438827 coding upstream 632772 9187244 ~ 9194515 (+)
LOC103034588 pcdh2g29,LOC108438829,LOC108438834,LOC107596372 coding upstream 652388 9171322 ~ 9174899 (+)
LOC103044029 LOC108442474,LOC108275029,LOC107680923,LOC107660187,LOC107587072 coding downstream 57349 9910406 ~ 9957528 (+)
thg1l thg1l,LOC103154062,LOC106912903,LOC107751338 coding downstream 121167 9974224 ~ 9977824 (+)
irf7 NA coding downstream 212359 10065416 ~ 10073101 (+)
hras hras,rash,LOC107562835,LOC103357265 coding downstream 332680 10185737 ~ 10206122 (+)
LOC103047796 NA coding downstream 354652 10207709 ~ 10212496 (+)
G72514 NA non-coding upstream 53688 9773199 ~ 9773599 (+)
G72503 NA non-coding upstream 105405 9720971 ~ 9721882 (+)
G72500 NA non-coding upstream 109372 9717673 ~ 9717915 (+)
G72496 NA non-coding upstream 117073 9708437 ~ 9710214 (+)
G72488 NA non-coding upstream 128289 9692669 ~ 9698998 (+)
G72606 NA non-coding downstream 124918 9977975 ~ 9978422 (+)
G72612 NA non-coding downstream 175426 10028483 ~ 10028846 (+)
G72615 NA non-coding downstream 204426 10057483 ~ 10057818 (+)
G72617 NA non-coding downstream 205628 10058685 ~ 10058886 (+)
LOC111193092 NA non-coding downstream 244202 10097259 ~ 10099145 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 677868 9142899 ~ 9149419 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 791261 8869128 ~ 9036026 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 2941746 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 3288493 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 3870268 5871090 ~ 5957019 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 115449 9968506 ~ 9970042 (+)
G72621 NA other downstream 225522 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 419862 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 3018427 12871484 ~ 12897931 (+)
G73533 NA other downstream 4795772 14648829 ~ 14649551 (+)

Expression


Co-expression Network