LOC103036760 (LOC108442475,LOC108275030)


Basic Information

Item Value
gene id LOC103036760
gene name LOC108442475,LOC108275030
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9958520 ~ 9965719 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672105.1
GTGTGCGGAGCAGCATGTCAGACCTGGCTGAGAGCACGTAGCTCCTCAGAGCAGAGCTGCAGGACTGAGCGGCGGAGTGCGGTTAATAAAGCGGTCATGATTCAGATCAGACACGCTCTGCGGAGAGCCCCGCTCCTCACACAGACCCCTCTCAGCCCTGCGAGCAGCGCGAGACAGCTGCCCAAGGCCTTCATCTCCACCGGTCCACAGCAGCAGGATGGAACCTTTTACGAGTTCCGCACCTACTGCATCCATCCACACTTAAACGCAGCATTCCTCAAGCTAACCAGTGAGAAGATCAGCCTGCGCACTGCACACTCTGAGCTGCTGGGCTACTGGAGCGTGGAGTACGGAGGTCTCAATCAGGTCTTCCACATCTGGAAATATGaaagctATGCTCAGCGGGCAGCTGTGCGGGCAGCTCTGGCTCGGGACCCCAACTGGATGGAGGAATACATCTCTAAAGCCATGCCCATGTTGAGCTCCCAAGACAATGAGGTCACATACCTGGTGCCTTGGAGTACAATCAAGAAACCCTCTAAAGAGGGAGGTGTGTATGAGCTGGTGTCATTCCAAATGAAGCCGGGGGGTCCAGCTGTGTGGGGTCCAACTTTTCAGGGTGCAGTAGGTGCCCACTCAGCTCCAGGATATGCCCATCCAGTGGGGGTCTTTCACTCTGAGTTTGGGCTTCTCAATAGAGTGCATGTTCTGTGGTGGTACGAGAGTGCAGACCATCGGGCCTCTATAAGACACACAGCTCACAGTGACCCCAGAGTAGTGGCTGCAGtgaggcagagtgtTTCCTACCTGGAATCTCAGAAAAACAAGCTCCTGTTCCCTTGTGCCTATTCACCCCTCAAGTGATCCTGTAGTATTAAATACTGGAACAGTGACACACCAGAACACTTTACTCCTGACCTCTAACCTGTGACTATGAAATGAGCTCTGACTATAGCAAGTAAGAGATCACTAATGTTTGCATCTGCGTTAATAATGTAAAGTTTAGTGCAGAGTAAAGTTTTTCCTTAGGGGTCATAGAAAAGTATTTTGTGTCTAATGAGTTTTGAACAAGATTAgaaccattatttaaaaatattttctgtttgTAGATTTCAGTCAAAACTGTCTGTATccttttataaatgtagattCTGAATGTTAGTTTCTTATATCTTATAGACCAGCTATGCACCTGCTTTATTGACTGTTGGAACGTGGGCATTAATGTTCTTAGACCTGTTCCTTCCttaacactcacacacctcaAGCTTTCTGTACACTAACAGCAGACATGTTTACAAAGAGCAGCAGTCCTTCACAGCCATATTCTAGTGCTATAATGCAAGCACCATGTTCAAAAATACATTGATTAATATACAttgattcaaaataaaaatgctgttatttgtataataca

Function

NR:

description
PREDICTED: protein NipSnap homolog 3A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672105.1 True 1417 mRNA 0.47 6 9958520 9965719

Neighbor

gene id symbol gene type direction distance location
cplx1 cplx1,LOC107751330,LOC107697630,LOC107660193,LOC107587069 coding downstream 333010 9544938 ~ 9625510 (-)
mfsd7 mfsd7 coding downstream 682019 9252866 ~ 9276501 (-)
LOC103029481 fgf18a,LOC103029481,LOC108430953,LOC108274431,LOC107747128,LOC107660900,LOC107754488,LOC105893086 coding downstream 1200392 8735077 ~ 8758128 (-)
enox2 enox2 coding downstream 1783626 7867201 ~ 8174894 (-)
med12 med12,LOC106604460 coding downstream 2190159 7726618 ~ 7768361 (-)
phrf1 NA coding upstream 107510 10073229 ~ 10093613 (-)
lrrc56 NA coding upstream 200608 10166327 ~ 10184846 (-)
LOC103047177 ldha,LOC103047177,LOC108442466,LOC107558315,LOC107707550 coding upstream 257399 10223118 ~ 10233197 (-)
abtb2 abtb2,abtb2b,LOC107675288,LOC107688574 coding upstream 665127 10630846 ~ 10717984 (-)
b4galnt4 b4galnt4,LOC108439245 coding upstream 759805 10725524 ~ 10965182 (-)
G72596 LOC107751334,LOC107746538,LOC107680923,LOC107551454 non-coding downstream 994 9955081 ~ 9957526 (-)
G72526 smu1,LOC108442464,LOC107082371,LOC106604632,LOC102223743,LOC108275199,LOC108243958 non-coding downstream 159117 9788501 ~ 9799403 (-)
G72524 NA non-coding downstream 174699 9783320 ~ 9783821 (-)
G72508 NA non-coding downstream 207828 9750450 ~ 9750692 (-)
G72497 NA non-coding downstream 249335 9707382 ~ 9709185 (-)
G72633 NA non-coding upstream 24477 9990196 ~ 9990507 (-)
G72689 tsg101,tsg101a non-coding upstream 246861 10212580 ~ 10221634 (-)
G72802 NA non-coding upstream 602185 10567904 ~ 10625271 (-)
G72803 NA non-coding upstream 605445 10571164 ~ 10627025 (-)
G72806 NA non-coding upstream 663478 10629197 ~ 10629486 (-)
LOC103042271 LOC108442478,LOC108275244 other downstream 55627 9856399 ~ 9902893 (-)
elp1 ikbkap,LOC107751344,LOC106611638,LOC105419749 other downstream 134001 9801055 ~ 9824519 (-)
G72453 NA other downstream 732961 9188399 ~ 9225559 (-)
G72449 pcdh2g29,LOC108438834,LOC108438829,LOC108274931,LOC108438833 other downstream 784211 9165878 ~ 9174309 (-)
G72336 NA other downstream 1312919 8639538 ~ 8645601 (-)
LOC103037069 LOC103037069,LOC108442462,LOC101069290,LOC107675263,LOC107562830,LOC107707530,LOC107085412,LOC101171241,LOC103151621 other upstream 86233 10051952 ~ 10054034 (-)
LOC103046452 rassf7 other upstream 136054 10101773 ~ 10162484 (-)
LOC111193093 NA other upstream 1259060 11224779 ~ 11225954 (-)
LOC111193052 NA other upstream 1555168 11520887 ~ 11545246 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other upstream 2082907 12048626 ~ 12051489 (-)

Expression


Co-expression Network