abtb2 (abtb2,abtb2b,LOC107675288,LOC107688574)


Basic Information

Item Value
gene id abtb2
gene name abtb2,abtb2b,LOC107675288,LOC107688574
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 10630846 ~ 10717984 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672114.1
gttcagttcagttcagagctgagtttctcctgagaggagggagtgagtgagagaggcgTGCCTCGTGCGCTTCAGGACTGTTGGGACGTTTCTCCCTCAGCTTCATTGCGTTTCGGACTTTATGAACTGAACCGACCCTGAGAACCTGGACTCGTTGATGGAGAAGCGAATCAGTGGAGACGTCGTTTCAACCAAACCTGCTCTGGACATCTTTCAAACGACCTGACGTTTCGGAAGAAGCCCTGAATGGAAAAGACGCTGTTTCTGTTCCACCTCCTGAGTCCTGCTGAAGGTGAGCGAGCTGAGGAGCACTACTAACAACATGGAGAGTAGCCGGGCAGAGTTTGTTGGCTAAACAAAGTTAAGCTAAGTCTTTATTTAAGGGAAAAGGACGTTTTATGTGGTTGGTTGCTGTATAAAACTATTTGGGAGAGTTGGGAGTGTTCCACGCAATACCAGGAAAGGAGTGCAACCAGTAGAACCAGCTTGGACCAGCAGAAGAAACCTGCCAGAAAAAAAAGGTACTGTACAGGTACATGTTTGTTCACCAAAGTTCAGACAGTGCAAATGTACCCTcaaagaaacagcatgatcatGCAGTGTCATTTAAAAGTAGTGGGAAACAAGTGCAAAGGAATTTAGTACAAATTAGTCTCTTAACTAAAGGTACTGGAGAATTTTGAGGGTATCACCCCAGAGACAAAAGGGTATCAAGCAAGTACCAGCCAGGTACCAAGAGGGGTATCGCCCCCAATAGGGACATCATCCAGACATTACTGGGACAATAGGGGTTCCACCCCACAAACAAGAGGTTACTATCCAAGAAACAAGAGGTGCACCACCACAGTGACAAGAGGTGTATCTTCCCAATACAAGAGGAGTATCTCCCCAGTGACAAGACGGGTACTACCCCAGGGACAGTCTTGTACTTTTTTCTCAGAGTGCAGAGTTGCACCACAAGTTCCAGAGAAGCAAAGCGATGGCTGGAGGGAGCAGCTCCCACATGAAGACCCTGGAGGACCTGACTCTGGACTCTGGCTACGGCGCTGGAGACTCCTGCAAGTCCCTGagcctctcctcctcctccaagTCCACCTCGCAGGCGCTGGCGAACGCCCCGCACCGGGGCAACTGGTGGTACTACTCGGGCTCCATGAACAGCCGGAACAACAGCTGGGACACTGTCAACACCGTCCTCCCCGAGGACCCCGAGGACATTTTCTCCAAGTGCCCGCGCCTGCCCGACCTGGAGGAGTTCCCCTGGAGCGAGGAGGACGTGGGCAACATCCTGCGCCGCGTCGCCAGCCAGTACCCGGGCGAGGGCGCCTCGTTCTCGGCCGAGGCCGTGCGCAGACTCTCGGTGCTCACGCGCCGCGCCCTAGTGCGCATCGCCCGCGAGGCTCAGCGGCTCAGCGTGGCGCACTGCCGCTGCACGCGCTTCGAGGTGCAGAGCGCCACGCGCCTCGTGCTCAGCTGGCCGCTCGCGGACCGCTGCGTCTCGGCCGCCGTGCGCGCGGTCTCCACGCACAGCATGAGCGCCGGGGAGCCGCTGCGCCGGGGCAAGTCGCGCCGCTGCGGCCTCACCATGCACGTGGGACGCTTCTTTCGCTGGATGGTGGACACGCGCGTCTCGGTGCGCGTGCACGAGCACGCTGCTATCTGCCTAAGCGCGTGCGTGGAGGCGCTCGTGGAGGAGGTGGGTGCCCGCGCGCTGACGGTGGCTGCCGCCGCGGCGGCAACGGGGGACGGAGCGCACGTCACCGTTGAAGTTTTGGAGGGGGTCGTGAACAACGACGCTGAGCTGTGGGGGGTCCTGCAGCCATACGAGCATCTCATCTGCGGGAAGAACGCCAACGGCGTGCTGTCACTTCCGGCCCATTTCAGTCCGTACACAGAGGGTCAGCAGGCCGGGGTGGAGAGCCGAGAGGATGCGTACGCCCAGTTGGAGCTGAGGACCCTGGAACAGTCCCTGCTGGCCACCTGCGTGGGCAGCATTTCAGAACTGAGTGACCTGGTGTCTCGTGCCATGCACCACATGCAGCGTCTGAGCTCTGTGCGTCCTGGACTCAGTCCAGCCCGTCACGCCCGCCAGCAGCCCGTCTCCTGGTCCCCCGACGCCCTCCACACGCTCTACTACTTCCTGCGCTGCCCTCAAATGGAGTCAATGGAGAACCCCAACCTGGACCCGCCCAGAATGGCCCTGAGCAAAGAGAGGCCTTTCCTCCTGCTGCCGCCCCTCATGGAGTGGATGCGGGTGGCCATCGTGCACGCCGAGCACCGCCGCAGCCTCCTGGTAGACAGTGATGATGTCCGACAGACAGCGCGGCAGCTCCTGCCAGGACTGGACTGTGAGCCCAGACTGCTGAAgccAGAGTGCTGTTTTAGTTCCTTCAGGAGGCTGGATGCCAAAGCCGCCACTGATAAGTTCCAGCTGGATCTGGGCTTTCGCATGCTGAACTGCGGCCGCACCGATCTGATAGGGCAGGCCATCGAGCTGCTGGGGCCAGATGGGGTCAACAGCATGGACGATCAGGGCATGACCCCGCTGATGTATGCTTGCGCAGCTGGAGACGAGGCTCTGGTCCAGATGCTGATTGACGCTGGAGCCAATCTGGACATCGCAGTGCCAGTGTGCTCCCCGAAACACCCCTCCGTCCACCCCGACAGCCGCCACTGGGTGGCGCTTACGTTCGCAGTGCTGCACGGACACATCTCTGTTGTACAGCTTCTCCTGGATGCTGGTGCGAGTGTGGAGGGGGCAGCAGTGCGTAATGGGCAGGAGAGCTGTGCAGACACTCCTCTTCAGCTGGCCTCTGCAGCAGGGAATTATGAGATGGTGAGTTTGTTGTTGGCGCGGGGCGCCGACCCCTTGCTGAAGGCTCATGACGGAAACATTCTTACATCATCGCTTTACGAGGACATGAACTGCTTCAGTCACGCTGCTGCACATGGCCATAGGAATGTACTGAGGAAGCTCCTCTCTCAGCCACAGCTGGTGAAGGACGATGTGCTCTCTCTGGAGGAGATCTTAGCGGAGGGTGTTGAGGGGGAGGTGGGGACACTCAGCAGGAACGGAGACATCCCACCCTCTCCCAACCCCAGCCTGGCCTCAGAGGGGGGACAGCCACGCCTCTGCAAAGCTCGCATGAAGGCCCTCCAGGAGGCCTCATTCTACAGCGCTGAACATGGGTACCTGGATGTCACAATGGAGCTCCGATCTCTGGGTGTGCCCTGGACAATGCACGTCTGGCTGGAGTCTCTGCGCAGCGCACAGCTACAGTCCAGAGCCTCCGTCACGCTGTCCCTGCTCCGAGACTTCACCTCCATCAAGGAGGACAACTACTGCGAGGAGCTGCTGTCTGTCGGCCTGCCCCTCATATTCAGCATCCTGAAGAGCAGCAAGAATGAAGCTATCATCCAGCAGATCGGCTCCATCTTCAGTCACTGCTATGGACCCGCTCCTATTCCTCCTGTTCCAGAGAGGAAGTCCACTCTTTCAGCACAGCTcgatcctcattttttaaataaccagGAGATGTCAGACGTGACATTTCTGGTGGAGGGGAAGCCGTTCTATGCTCACAGAGTTTTGCTAATGACAGCATCTGAGAGGTTCAAGTCCATTCTGGGCTCCAACAGTTCTGGTAACTCTCAGCACTGCAATGACATCGAGATCAGCGATGTGAAGTACAACACTTTTCAGGTGATGATGTCATACCTGTACTGCGGGGGATCAGAGTCTCTGAAGCTGGCTGTTCCAGATCTGCTGGAGATGCTGTCAGTGGCCAGTTTGTTCCAGTTGGCAGGACTCCAGCGGCACTGTGAACAGCTGTGTGCTCAGAACATCAACCTGGACAACGCAGTCAGTGTGTACAACACAGCCAAGGCTCATGGTGCAGCAGAGCTGAGTGCATACTGTGAGGGCTACTTCCTTCAGAACATGGGCTCTCTGCTGGAGAGGGAGAGCTTCCGGGGGCTGATCTGTGGGCCTGGAAGCCGCTCCAGCCCCGGGAGAGACCTTCTTCTGGAGGAACTGGAAGGAACACTAATCTGCAGGATCCGTTCACTGCACATCACCTCCCGCGTGTGAGAGGAGGAGGCCAGAGAGGAGCTGGAGATGGAGGAATAAAGCTAGAGAAGGACAATAAAGGACAATGACTGAGGATGATGGACAATgatgagagagaaggagagaggaaaGGTTACAGAAGACAGAGTTCCTGTGAAGatgaacagaaagagagaaaatgaagtggAGTGGAGGACAATATTGAAGTTGGAGAGAAAGTAGCAGTAACTGTGAAAGTTGTGCAACGTGGGCAGAGATTTCGAGATTTTCAGTTTGGGAGCTTGCAGCTATGGACAATGCTAGACTGCGCTGTAAAGAGTGTAAAATACATATACTGAATGCAGTGGCATTCTAGTAGCTAAAGCTATCAACATGTAGAAGCCCTAAAATTGTGTCTGGAGAACAGCGTTCGCTCTATGCTCGGACACACGTCCATTGTGCATTTTGAGAGTCGATGTGGTGGGAGCCGTGCTGGATGGAGTGGGAAATTTGAATTTTTATAAGCTAAATTGCAACAAGTGTATTGGAGAAAGGAATGgacattttctatttaaaaaatgtgagatTATTTAAGTTCCCTTTTTATTGTGCTTTAtgccaaacaaataaaataatataaaacaaga

Function

symbol description
abtb2b Predicted to enable protein heterodimerization activity. Orthologous to human ABTB2 (ankyrin repeat and BTB domain containing 2).
abtb2 Predicted to enable protein heterodimerization activity. Predicted to act upstream of or within cellular response to toxic substance.

NR:

description
PREDICTED: ankyrin repeat and BTB/POZ domain-containing protein 2

GO:

id name namespace
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K10521 ABTB2; ankyrin repeat and BTB/POZ domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672114.1 True 4695 mRNA 0.56 17 10630846 10717984

Neighbor

gene id symbol gene type direction distance location
LOC103047177 ldha,LOC103047177,LOC108442466,LOC107558315,LOC107707550 coding downstream 397649 10223118 ~ 10233197 (-)
lrrc56 NA coding downstream 446000 10166327 ~ 10184846 (-)
phrf1 NA coding downstream 537233 10073229 ~ 10093613 (-)
LOC103036760 LOC108442475,LOC108275030 coding downstream 665127 9958520 ~ 9965719 (-)
cplx1 cplx1,LOC107751330,LOC107697630,LOC107660193,LOC107587069 coding downstream 1005336 9544938 ~ 9625510 (-)
b4galnt4 b4galnt4,LOC108439245 coding upstream 7540 10725524 ~ 10965182 (-)
tmem86a tmem86a,LOC107707555,LOC107709947,LOC107688565 coding upstream 290637 11008621 ~ 11028650 (-)
LOC103038359 NA coding upstream 331713 11049697 ~ 11084679 (-)
kcnj11 kcnj11,LOC107758740 coding upstream 1019299 11737283 ~ 11739371 (-)
abcc8 abcc8 coding upstream 1021978 11739962 ~ 11804035 (-)
G72807 NA non-coding downstream 1022 10629582 ~ 10629824 (-)
G72806 NA non-coding downstream 1360 10629197 ~ 10629486 (-)
G72803 NA non-coding downstream 3821 10571164 ~ 10627025 (-)
G72802 NA non-coding downstream 5575 10567904 ~ 10625271 (-)
G72689 tsg101,tsg101a non-coding downstream 409212 10212580 ~ 10221634 (-)
G72845 spty2d1,LOC107688563 non-coding upstream 315173 11033157 ~ 11034777 (-)
G72847 NA non-coding upstream 319524 11037508 ~ 11038145 (-)
G72857 NA non-coding upstream 361104 11079088 ~ 11132273 (-)
G72881 NA non-coding upstream 513195 11231179 ~ 11231678 (-)
G72967 mob2,LOC108411394,LOC108274974 non-coding upstream 976694 11694678 ~ 11733149 (-)
LOC103046452 rassf7 other downstream 468362 10101773 ~ 10162484 (-)
LOC103037069 LOC103037069,LOC108442462,LOC101069290,LOC107675263,LOC107562830,LOC107707530,LOC107085412,LOC101171241,LOC103151621 other downstream 576812 10051952 ~ 10054034 (-)
LOC103042271 LOC108442478,LOC108275244 other downstream 727953 9856399 ~ 9902893 (-)
elp1 ikbkap,LOC107751344,LOC106611638,LOC105419749 other downstream 806327 9801055 ~ 9824519 (-)
G72453 NA other downstream 1405287 9188399 ~ 9225559 (-)
LOC111193093 NA other upstream 506795 11224779 ~ 11225954 (-)
LOC111193052 NA other upstream 802903 11520887 ~ 11545246 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other upstream 1330642 12048626 ~ 12051489 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other upstream 1830706 12548690 ~ 12564978 (-)
G73172 NA other upstream 1892850 12610834 ~ 12621356 (-)

Expression


Co-expression Network