igsf22 (igsf22)


Basic Information

Item Value
gene id igsf22
gene name igsf22
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 10975721 ~ 11000591 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672116.1
TGTCTGTCATGTCCACTGAGGTGATCCAGTCCAGTGGGGGCGGTATGGGGCAGCGCTCTGAGCTACACATGTCTTCCAACTCgttctccacctccacctcctcctcaagCTCCTACTCCATCAGCTCCACACGTCTGAGAAAGGTCTCTCAAACCTCCAGGCTGCTCGAggAGCAGTCAGGAGTGCAGCGTAAGATCTCAGGTGTGATGGAGTCATTCAGTCAGGTGCAAAAGAGCTCTGAGATCCCTGCAGGAGAGAGCATTCCAGACTTCGAGGACAGGCCTTGCTCTGTTACAGCTCAAGAAGGGAACAAAGCTGCGTTTAAAGCAAAGGCATCCGGCAACCCCAAACCAACTGTAACCTGGACCAGAGAGAGCGGCAAACCGATGACAGAGGGTGCCAGGACCTTCTATGATGACATCAATAAGCAGTATGTGTTAAAGatTAAAAACCTGACCATGGAGGATGCTGATGTGTACAAGTGCATTGCATCTAATTGCCATGGGGATGCTATATACTCTGTCTCACTTGTTGTGACTGAAAATCCAGCACTGGactttaagaaaaagttgaagaAAAGGAGTgtggagaagaaggagaagaagccTCCCACCGAGGAGGAGATGCTGAAGATCCTGGCCGGGGCTGAGAAGAAAGACTACGAGCGCATCTGTGCAGAGTATGGCTTCACTGATTTCAGAGGAATCCTCAAGAAACTCAAAGAGATGAAGAAGAAAGTGGATGTGGAAATGGTGCGAGTTTTGAAACCCTTGGAGAATGTAACAGCGAAGGAGGACTCTAATGTAGTTTTTGACACTATTCTGGAGCTGAAAGATCCGAATATCAGGATGCTGTGGTTTCAGGGCGAGGAGCTGCTGCGGATTCAGTACTCTCTCGGGAAGTATGAAGTTAAACAGCTGGGTACTAAGCACATGCTGTGTATCTCCAGCGTGTGTCTGGCAGACTCTGGCACATACTCTCTAAAAGTTGGAGACAAGATCCTGTCGGCCAAGCTGACTGTCATAGAAGAGCCTTTGAAGTTCGCGACAGATCTGAAGCCCCTGCGAGTGACGGAGAGACAGACCGCTGTGTTTGAGGTGCATCTCTCCAAGAGGGCTGACACCCCTCCGGTGTGGAAGTTTAAAGGGAAGGAGCTAAAGCGAGATGAGAAGttcgatgtgtgtgtgtctgaggaCGGCCTCACTTACACTTTAAAGATCAAGGACGTGCGTCCCAGCGACACTGGGGACTTTACTATCAGCATCGGAGACTTGACCACTACAGCCCAGCTCTTCATTGAACGGATCCCAATCAAGTTTGTGAGTCATCTGAAGAACGTACGAGTGAAGGAGAAAGGCAAGGCCAGGCTGGAGGCAGAGATGAGCTCCAAAGACGTTCAGGTGAGGTGGCTGAAGGACGGGAAAGACATCACTAATAACCCACGCTACATCTTCATGAGGGAAGGCAAGAGGGCTGAGCTCATCATGGAAGACTGTGAACTGGAAGACAGAGGAGAATATTCCATCGTCTGCACTCAAGATAATGACAGCAATAAATACGTCAGCTCCTCCAACCTCACTGTGGAAGagCGCTTTGCCACAGTGAAGAGCAGCATGTCAGATGTTCAGTGTCCCTCAGGATCCCCCGCAGAGCTCTGTGTGGTTCTGGATGATGAGAAAGTAGATGGTGTCTGGCTGAAAGATGGTAAAGAGATCACGGATCTGAGAGGGGTCCAGGTGGTGAAGCAGGGTGCTGTTCATAAACTGCTGATCAGAAACGTGGGAGATGAACACGAGGGCCAATACACCTTCAGAGCGAAAGGAGCGGAGAGTGAGGCCGTGCTGAATATAGCCAATCCCCCTGTTATTGATCCCGCTCTGCTGGAGATGCTATCCAGCCAGCCGGTGACTGTGAAAGCTGGAGAGATGGCCACGATTAAGATCCCTTTCAAGGGCAAACCTGCACCAAAGGTAACTTGGTACAGAGACGGGCTGGAGCTGGTCGAGGACAGACGGGCAGTGGTGCAGCGGGATCGAGATTCCAGCACATTAGTGATTCATAAATGTGTGAGAGAGGACAGCGGAACTGTCATGCTCAGACTGAAAAGTGACTGTGGATCAGCCAGTGCCACTGTGCAGCTGAATGTGATTGACCGTCCTAAACCACCACAGGGTAAAGTGGATTTTCTGGAATGTAGTGGCAAGTGCATTACAATGAAGTGGAAAGCACCACGGGACAACGGGGGCAAAAAGGTGACCAGTTTCGTCATTGAGAGACGCATGACTGGAAAGAAGTCATGGATCAAGGTTGGAGAGGTGGATGGAGACATCACCACCTTCTGTAATGACACGGTGGAGGAGGGGAAGCCGTACCAGTACCGCATTAGAGCAGTGAACTCACAGGGTCTGAGTGATCCTTTGGAGACCGAGCAGGTCTATGCTGGAGAACCTATTGAACCTCCTAGTTTGGTCCCTCAGCCCCAGATCAGTGATGTAACTAAAGATTCAGCCACAGTCACATGGACTAATCCGGCCCAGGACGGTGGTGCTCCTGTTCTGGGTTACATAGTGGAACGCAGAAAGAAAGGAAGCAGTATGTGGGTGTCCATCAGCAAGGAACTAATCCAAGACACAAAGTGTGTGGTAGATGGCTTAGTGGAGGATATGGAGTATGAGTTCAGAGTGACTGCTGTCAACAGAGCTGGAGAGGGGACACCCAGTGCCTCATCCAACACAGTGCTGGCCAAGGATCCCACACGAGCTCCTGGTCTGGTTGGGAAATTTCATGTAATAGACTCCTCTAACACCTCCATATCTCTGGCCTGGTGTTCTCCTGAGCTGGGAGACAACCCAACCGGATATATCCTGGAGATGCGCCCTGAAGATGGGAAGGAATGGGCCAAATACACAAAGATTCCCATCACTGGTACCTCCTACAATGTTGGTGGCCTGCAGGAGCGGATGAAGTACTATTTCCGTATCAGAGCTGTCAATCAGGGGGGCATTGGAGAACCAATAGAGCTGGAGCATGGTGTTCTTGCTCTGCCACCACCagAACCCCCAAAGTTTAATCTCCAGGGCAAGGTGAAACATCAGATTTTGGTGCGAGCTGGATGCACACTGTGTATCCCTGTGTCCTTCAGTGGCTCTCCTCCTCCAGAGGTCACCTGGCTGAAAGATGGTGTTCCAACCAGAGGCCAGGAGGTCATTTCTAAGGGGAAGAACGATTCGCAGTTCATGATTACCTCATGTCAGCGCTCTGATTCTGGAGTGTACCGTGTTATCCTCAGCAATGACTGCGGGGAGGTTCACTACGACATCAGCGTCCGTGTCACTGatgctccTCGTTCTCCTAAGAACTTGCGTCTGGTAGAGGAGGTCCAGGGTACAGTAACTCTGCATTGGGACCACACTCCGGACCTCACTGAAGATGAGCACACTCATTATATCATCCTTAAGAGAGATACCAGTACAACCACCTGGTTTACGGCTGCTGAGCACGTCTTCAGCAGCAAGTACACCGTCACTGGCCTGTTTCCTGGCCGCAAGTACTACTTCCGAGTCATCGCACGCAATCTCATTGGGGACAGTGATCCTCTGGATGCAAAGGAGCCTTTCAGCATCGAAAAGGAGCATGAAAACCTCATCTTGCAGATGAAGCCCTTCACCCATAAGCATCATGAGGTCAAGCCTGGGATCCTCTTGCCCCTGAAGAACCATGCTGTTTGCTCTGGCAATGACTGCACCATGAGCTGCGCCTTCTTTGGCTTCCCCGTCCCGCAGGTCTCCTGGTTTAAGGAGGATGTGAGTATTTTAGACAGCCCTCGCTACTGGCAGAGCAGCACTGATGGAGTCTGCACCCTCACCATCCCCACCTGCACAGTTAAGGACAGCGGAGAATACACCTTGCTGGTGGAGAACAAGCTGGGGAAGGCCAAGTGCAAGTGCAGCCTTGTGGTCTTCGATAAGGATGATAACAGACTGCTGGAGCACCTGACTCAGGAATCTTGGAAAGAAAAGCTCATCATCTAAGGGAAGCACAATCCAAAGCACCTGTCTGGAATTATTAGCTGAatgcataaaaagtaaaatgcacattttatcAAATCTTTCTCAGTGGGTTGTTTAAGATgcatctgatttaaaaaactaaaaaactgaa

Function

symbol description
igsf22 Orthologous to human IGSF22 (immunoglobulin superfamily member 22).

NR:

description
PREDICTED: immunoglobulin superfamily member 22

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672116.1 True 4161 mRNA 0.50 22 10975721 11000591

Neighbor

gene id symbol gene type direction distance location
tsg101 tsg101,tsg101a coding upstream 753894 10212563 ~ 10221827 (+)
LOC103047796 NA coding upstream 763225 10207709 ~ 10212496 (+)
hras hras,rash,LOC107562835,LOC103357265 coding upstream 769599 10185737 ~ 10206122 (+)
irf7 NA coding upstream 902620 10065416 ~ 10073101 (+)
thg1l thg1l,LOC103154062,LOC106912903,LOC107751338 coding upstream 997897 9974224 ~ 9977824 (+)
spty2d1 spty2d1 coding downstream 28895 11029486 ~ 11034828 (+)
LOC103022764 uevld,LOC108275186 coding downstream 36909 11037500 ~ 11048398 (+)
th th,LOC108274586 coding downstream 105063 11105654 ~ 11116630 (+)
LOC103024122 LOC108439251,LOC100136550,LOC100304637,LOC107675272 coding downstream 122588 11123179 ~ 11132277 (+)
LOC103028645 LOC108428835 coding downstream 562741 11563332 ~ 11634593 (+)
G72753 NA non-coding upstream 173949 10799546 ~ 10801772 (+)
G72752 NA non-coding upstream 176876 10797992 ~ 10798845 (+)
LOC111193092 NA non-coding upstream 876576 10097259 ~ 10099145 (+)
G72617 NA non-coding upstream 916835 10058685 ~ 10058886 (+)
G72615 NA non-coding upstream 917903 10057483 ~ 10057818 (+)
G72766 NA non-coding downstream 7958 11008549 ~ 11015607 (+)
G72871 NA non-coding downstream 184075 11184666 ~ 11184981 (+)
G72875 NA non-coding downstream 222183 11222774 ~ 11223004 (+)
G72876 NA non-coding downstream 224203 11224794 ~ 11226186 (+)
G72882 NA non-coding downstream 520421 11521012 ~ 11522661 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 348757 10272919 ~ 10626964 (+)
G72621 NA other upstream 893581 10078579 ~ 10082140 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 1005679 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 1826302 9142899 ~ 9149419 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 1939695 8869128 ~ 9036026 (+)
LOC103043719 NA other downstream 1870893 12871484 ~ 12897931 (+)
G73533 NA other downstream 3648238 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 3890943 14891534 ~ 14921003 (+)
svip svip other downstream 4571711 15572302 ~ 15577533 (+)
G74169 NA other downstream 5286085 16286676 ~ 16288329 (+)

Expression


Co-expression Network