kcnj11 (kcnj11,LOC107758740)


Basic Information

Item Value
gene id kcnj11
gene name kcnj11,LOC107758740
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11737283 ~ 11739371 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672127.1
AGTCTGAACAGGCGGTAGGCGACTCTAAGCATGGCTGACAGAATATCATGTTTCAAGtgacagacagcagcagctgaatCGCTGGAAGCTGAATCTTCTCTGGGGagctcctcacagcaatgctagtGCAGGTGAATCACTCTTAATGAACAACTCGTTTAACTGAATCAGACGGAGCGTGCAGTTGTTAAatgtgatgtgtttgtgtgaaacaGTGTGACTTTTAGAAATGTAGGTGAAGGAAATCTGGTGGGAAACAAGACGAATCGAAAAAATTGGATCAGCTCGATTGAAATAGTGAGAAAGAAACGAATCAGTAGAGTGTACTGATTCACACAAACGGATCGTTTGAATGgaattaataataaactgaATCGACTCGTGCAAGAATGTAGCGAATCGATGAGGAAAACAAGATGCTTAACAAAAGAACTGATCAGTCGATACGGAGGACTTCTTTGGAGTGCTTCATTACAGCGAGTCGATTCAGGAGTCGGTTCAGTGGAGTGAATTCACTCCAGTAGACGCATACACACAGACTGGAACTGGAAAGAATCGGATCTGTAAAGTGAGTCGCGCTGCCCATGAGCGCTGCCTGCCCGGGACAGGGACAGGGCAGCTGAGCGCGCGCATAGTTTTGGTGAGCAGCTGACGGCGCGCGCTGCGGGTGGGGGAGTTGTTGGTGAACCGGTGAACCAACCGGAGCGCAGCGCTGAACGTTTCCACCGACCGCGATGTTTACCTGGCGAGGATTTGCCGGCAGCAGCGGCAGAACCTGAGCGCGGCGAGCCTTAGCATGGGACAGCAGCAGCTATGCTGTCCAGGAAAGGACTTATCCCGGAGGACTTCGTGGTGACCCGGCTGGCCGAGGATGTCCTCCAGCCCAAATACAAGGCGAAGCAGCGCAAGGCGCGCTTCGTGGCCAAGAACGGCGCGTGTAACGTAGCGCACACCAACATCCGCGAGCAGGGTCGTTTCCTGCAGGACGTGTTCACCACGCTGGTGGACCTTAAGTGGCTGCACACGCTCTTCATCTTCACCATGTCGTTCCTGTGCAGCTGGCTGCTGTTCGCCATGATCTGGTGGCTCATCGCCTTCGCGCACGGGGACCTGGACGCGGGGCGGCGCGAGGACGCGGTGCCGTGCGTCACCGACATCCACTCGTTCACGTCGGCCTTCCTGTTCTCCATCGAGGTGCAGGTGACCATCGGCTTCGGGGGGCGCATGATCACGGAGGAGTGCCCCTCGGCCGTGCTCGCGCTCCTTGTGCAGAACATCGTGGGCCTTGTTATCAACGCCATCATGCTGGGCTGCATCTTCATGAAGACCGCGCAGGCCAACCGGCGCGCGGAGACGCTCATCTTCAGCAAGCACGCGGTGGTGGCCGCGCGCAACGGCCGCCTGTGCTTCATGTTCCGCCTGGGCGACCTGCGAAAGAGCATGATCATCAGCGCCACGGTGCGCATGCAGCTCGTGCGCCGCGGCGGCACGGACGAGGGCGAGGTGCTGCCGCTCGAGCAGGTCGACGTGCAGACCGACAACCCGGTGGGCACCAACGCCATCTTCCTGGTGTCGCCCCTCATCATCAGCCACGTGATCGACCGCAGCAGCCCCCTGTACGACGTGTCCGCCGCCGACCTGCAGCGCCAGGAcctggaggtggtggtggtgctggagggCGTGGTGGAGACCACCGGCATCACCACACAGGCAAGAACGTCCTACGTGTGCGACGAGATCCTGTGGGGGGAGCGCTTTGTGCCCACCGTGTCCGAGGAGGACGGCATGTACGCCGTGGATTACTCCAAGTTCGGAAACACGGTGCGGGTCCCCACGCCCACCTGCAGCGCCAAGCAGCTGGACGAGGAGGGCGGACTGGCCAGATTCAAGCCCCTCAGAGACGCTGCGGCTGCGGGCAGGAGCTCGGTACGCAGGAGAGTGAAGAAGCAGCAGAGCACCTTCACAGTGGAGTGAGAACTCTTATTTTGGAGTGGAAACAGGAGGCACTGACGcgtgtgaatgtgtttgtgtgtgtgtgtgtgtgtgtgagtgtaaacgggctaaaataaaagagagaggatGCACGAAA

Function

symbol description
kcnj11 Predicted to enable ATP-activated inward rectifier potassium channel activity. Acts upstream of or within type B pancreatic cell development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in familial hyperinsulinemic hypoglycemia 2 and glucose metabolism disease (multiple). Orthologous to human KCNJ11 (potassium inwardly rectifying channel subfamily J member 11).

NR:

description
PREDICTED: ATP-sensitive inward rectifier potassium channel 11

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005242 inward rectifier potassium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672127.1 True 2089 mRNA 0.58 1 11737283 11739371

Neighbor

gene id symbol gene type direction distance location
LOC103038359 NA coding downstream 652604 11049697 ~ 11084679 (-)
tmem86a tmem86a,LOC107707555,LOC107709947,LOC107688565 coding downstream 708633 11008621 ~ 11028650 (-)
b4galnt4 b4galnt4,LOC108439245 coding downstream 772101 10725524 ~ 10965182 (-)
abtb2 abtb2,abtb2b,LOC107675288,LOC107688574 coding downstream 1019299 10630846 ~ 10717984 (-)
LOC103047177 ldha,LOC103047177,LOC108442466,LOC107558315,LOC107707550 coding downstream 1504086 10223118 ~ 10233197 (-)
abcc8 abcc8 coding upstream 591 11739962 ~ 11804035 (-)
LOC111193095 NA coding upstream 28138 11767509 ~ 11776139 (-)
ush1c ush1c,LOC107675293,LOC106561052 coding upstream 66446 11805817 ~ 11834740 (-)
LOC103031503 tnnt3b,LOC108428830,LOC108275000 coding upstream 205054 11944425 ~ 11953789 (-)
LOC103031193 LOC108428829 coding upstream 218199 11957570 ~ 11996201 (-)
G72974 NA non-coding downstream 2437 11734144 ~ 11734846 (-)
G72967 mob2,LOC108411394,LOC108274974 non-coding downstream 4134 11694678 ~ 11733149 (-)
G72881 NA non-coding downstream 505605 11231179 ~ 11231678 (-)
G72857 NA non-coding downstream 605010 11079088 ~ 11132273 (-)
G72847 NA non-coding downstream 699138 11037508 ~ 11038145 (-)
G73030 NA non-coding upstream 386165 12125536 ~ 12126823 (-)
G73098 NA non-coding upstream 455202 12194573 ~ 12196578 (-)
G73119 LOC108428815,LOC108428741 non-coding upstream 763492 12502863 ~ 12539230 (-)
G73125 NA non-coding upstream 770670 12510041 ~ 12510921 (-)
G73159 fanci,LOC107670230 non-coding upstream 833940 12573311 ~ 12574584 (-)
LOC111193052 NA other downstream 192037 11520887 ~ 11545246 (-)
LOC111193093 NA other downstream 511329 11224779 ~ 11225954 (-)
LOC103046452 rassf7 other downstream 1574799 10101773 ~ 10162484 (-)
LOC103037069 LOC103037069,LOC108442462,LOC101069290,LOC107675263,LOC107562830,LOC107707530,LOC107085412,LOC101171241,LOC103151621 other downstream 1683249 10051952 ~ 10054034 (-)
LOC103042271 LOC108442478,LOC108275244 other downstream 1834390 9856399 ~ 9902893 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other upstream 309255 12048626 ~ 12051489 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other upstream 809319 12548690 ~ 12564978 (-)
G73172 NA other upstream 871463 12610834 ~ 12621356 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other upstream 2802825 14542196 ~ 14545536 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other upstream 2969687 14709058 ~ 14797283 (-)

Expression


Co-expression Network