LOC103038976 (LOC108428833)


Basic Information

Item Value
gene id LOC103038976
gene name LOC108428833
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11925987 ~ 11938380 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672134.1
gcagTAGTAGTTAGTAGGAGGAAGTTATACATGCGCAGCTCTGGCTGTGTTTTTCCTGCTGCAGCGCTCCATTCGCTCACACGCACCGGATGAACTTGACAGTTTGAACGGGAAACGATTTCACGCAGTTAAATCGGTGAAATCCCCCCGCGGAAGAACTCCACCGCTCCTGTAAACACCGCACACACTCCGCTGTACTCGCCGATACCGCCACTCTCCGCGCGCGAGGGAATCAAGAGAGCGCGAGCGGCAGGTCGGCGGTGCGGTGTATCTGAAGAACAGCGCGGGGTTCAGCGGTGCGGGACTGTTCCGTTAACTGCAGCTCAGACATGTCGGAACCGGGAGGCAAGCGGCTGAAAAGCAGCGTCCCCGTCTGTAGAGCTCACCGCGGTTCTGCCGCGAGCAGAGCCCGGCACAACCTGCCGCCTGCGGTGGAGGAAGCGCTGTGTGGAGTCTCCAGCTTGCTCATGGAGTTATCTTACCGTCTCCACGCGCTGGCCAAGATTTTTGAGCAAGATGACCTGGCTTTGCCACGTGTGGCTGCATATTTCTATCTGGAGTCCACAAGAGAGCAGGAGCAGGCGGAAGCCATGCTACACTACCTGTCCGAGCGTGGAGGACAATACTGCAGCAAAGATATCCAGAGACCAGGGACAGAGCAGGTGTGTGCGCTGCTCCCTGCCCTGGAACTCCTGCTGGGCCAGTGGAAGGAGGAGATGGCCATCATGGTGGAGCTGTCTCAGCTAGCACGTGAACATGGAGACCCCCACTCTGCCAGTGTCCTCAAGAGCCACTTCCTCCAGCCTCTCGCACCAAAGATCAAGCTGCTAGGTGACCTCTTGACCAATGCTCGAAGACTGGGCTGCACcagtgatggtgctggaggatATGGAGAGTACCTCATTGACCAGCTCTATGAGGAGCTGGCCAGTGCCTAAATGTCCTGTAAAGCCCCTTGTTGATGCATTAATGGCCTGACTAGCAGTTATTTCCTATCAATACTTTCTGCACTGTTAGATCTCGTGCTCAGCCTGCATGGAGTGTGTTCTGTTTGTGGCATGAAAGAGATGATTTGTGGGTTTCTTGAATGGCGTGTTCTTGAAGCTTGGTATTACCTTTCCCCACAGCTGAAAAGTACTGAGCAAGTGGAAAATAATGTGAATTTCCCATATTGTCAAAATAAGTGCTAAAAACATGGGAgagattattaaaaatgaatgactaAGAGAAATTTTGACAAGTTTGATATGTTTTTTAGTGACTATGaatgtgtttttgtaaaaacaaaaagcctGTAGAGTGGAACAACAACTTGCTGTTTTACATTAAGAAGTGccctatatgaaaaaaaattatgcagtATTTTATAGACAGAATTTGattcattgttatattttttgaCTGACACTGATTAAATGTTTTGGTCTGGATTGTGTATTGGAGGTTTAGATTTTTAATCTCACACTTCACCTATTTttttagaagtatttttaatcatttctgTTGCTTTTAAAGCGTGTTTTGTGATGGGTTCTGCGtgtttgtattgtgtttgtatgtgtggaAGACAAGAGTTTCCTTCTTTGCACTGTTACTTTTctttgtgttcatgtgtgtgttttatgtaggATTTAAGCCATAAACCAATAAAATCTATTGAAACTGTTAAA

Function

NR:

description
PREDICTED: ferritin, heavy subunit-like

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0006826 iron ion transport biological_process
GO:0008199 ferric iron binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672134.1 True 1670 mRNA 0.47 3 11925987 11938380

Neighbor

gene id symbol gene type direction distance location
LOC103029705 mob2,LOC108411394,LOC108274974 coding upstream 192792 11665815 ~ 11733195 (+)
LOC103028645 LOC108428835 coding upstream 291394 11563332 ~ 11634593 (+)
LOC103024122 LOC108439251,LOC100136550,LOC100304637,LOC107675272 coding upstream 793710 11123179 ~ 11132277 (+)
th th,LOC108274586 coding upstream 809357 11105654 ~ 11116630 (+)
LOC103022764 uevld,LOC108275186 coding upstream 877589 11037500 ~ 11048398 (+)
myod1 myod1,myod coding downstream 1144 11939524 ~ 11941817 (+)
LOC103034044 NA coding downstream 17244 11955624 ~ 11963784 (+)
znf469 NA coding downstream 426985 12365365 ~ 12417357 (+)
LOC103039191 LOC108428816 coding downstream 520165 12458545 ~ 12485409 (+)
LOC103039298 NA coding downstream 552204 12490584 ~ 12547678 (+)
G72946 NA non-coding upstream 107749 11812999 ~ 11818238 (+)
G72905 NA non-coding upstream 246165 11610470 ~ 11679822 (+)
G72893 NA non-coding upstream 300491 11567577 ~ 11625496 (+)
G72882 NA non-coding upstream 403326 11521012 ~ 11522661 (+)
G72876 NA non-coding upstream 699801 11224794 ~ 11226186 (+)
G72993 NA non-coding downstream 5597 11943977 ~ 11951765 (+)
G73001 NA non-coding downstream 39828 11978208 ~ 11978882 (+)
G72992 NA non-coding downstream 94703 12033083 ~ 12050540 (+)
G73029 NA non-coding downstream 187253 12125633 ~ 12126858 (+)
G73031 NA non-coding downstream 192182 12130562 ~ 12130798 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 1299023 10272919 ~ 10626964 (+)
G72621 NA other upstream 1843847 10078579 ~ 10082140 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 1955945 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 2776568 9142899 ~ 9149419 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 2889961 8869128 ~ 9036026 (+)
LOC103043719 NA other downstream 933104 12871484 ~ 12897931 (+)
G73533 NA other downstream 2710449 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 2953154 14891534 ~ 14921003 (+)
svip svip other downstream 3633922 15572302 ~ 15577533 (+)
G74169 NA other downstream 4348296 16286676 ~ 16288329 (+)

Expression


Co-expression Network