trim44 (trim44,LOC107716865)


Basic Information

Item Value
gene id trim44
gene name trim44,LOC107716865
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14078012 ~ 14161299 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672166.1
acacacacacacacacactcagagagaTTTGTAGTGGTGTaatcagtctctctttctctcttttagctCTCCCGGCTCCGGCTgcagaaacaggaagttgtgaaaaaaataagcagCAGAGCACGGATCAAAACAAGGAAGTGGAGGGTGCCGAGCTCAGCtggaaagagaaagcagatcaggCCACAGCAATGCTAAGGAAGGAAGCTAGCTGCTGGAGTGTTAGCCTGCTGCTCAGTGACAATAACTCTTTGAGAGAGGGGAGACCTGCGACTGTATTTCAGACACACTGCGAACACACTGAGGATTAGAGCACACGGACAAGCAGCAGCAGAGGGGAGAAAAcactgtgagtGCTCCCCTGGGATCCTCTCTCTCCTGGTCTACCTGCACCATGAATTCTCCAGAAGCATGCTGGGATGTTGACGACTTGCCTCAGATGGACGGCACCTGCGATGCCTGTGAGCCTGATGAGGCTTTGCCGGCCACGCAGTTGTGTGCGCTCTGCCGCTTTGCCTTCTGCTCCGACCatgcagaaaaacacacactcagcaccaGGCACCAGCTTCAGCCTTACTTCCCAGACCAGCCTCCAGAACCAGCCCAGCGAGTCAACGGCTGCGGCCAGGCAGAGGTGGCCGAAAATGGGCTGGAGGTGGCCGAGGCCGCTGGGGGAGAAGGCCGTGAGCCAGAGGAGGAGGACCAGCAGAGTGCAGCCGAGACAGGAAAGAGGGACACAGTGACCGTAGAGAGACTAAGGTGTCAAGAGCATGGACAGGAGGGGTCGCTTTACTGTAAACAAGACCAGaagattgtgtgtgtggtgtgtgccgTGCAGGGAGAGCATCGAGAACATGAGATCATCACGCTCAGAGAGGCCTACATGTGGCAGAAGaGTAAAGAGGGCATAGACCTGCTTGCATGCACTCAAGAAATGTCAGAAAAGATCCAAACCAAGTGGACGAGTCCAGATATGAGCCCGGATGAGCTGGAGCGCTATGTAAACCAGCAGTTTGACGAGCTACACAGACTGGTTCGACTCGAGGAGTGGCGTGTGCTGCACCTGGTGGACCTGAAGGAGGCCTTCCTGACAGCGCAGGCAGCAGAGAAGATCGCAGAGATCAGCGTTCACACGGAGCGTCTGCAGGAGGAGATGGACTCCATCACACAGCAGCTGGGGGAACTGGATCAGGCTGAGCGCAATGGTGTCGCCCCGGCTGCACTGGCTCCTCTGCTGGCTGCCCAACCACAGCCGCCCCGCGCACCACCAGAACCCAGAGCAAGGATGGACCCTGAGGCCAGGCCAAGgCATGATCACCGGCGAGGCCCAGAGGACCATCGCGACTATGGAGATGACGGAGACTCATTCATGGGACATGCACCATAACATCAGCAAAATGCCCACAAATCTCCACATATCTCTGCTCTCCTACTTGCTTATCAGGGACAGAACACTGGAGTGGACTGCTTCGGGGTATCAGAACTGCATTGTAACCACCAGTTTGATATCCCGGATTTGTTGCCTTTTTTCTATTCAATCTAAACTGACTGACTTTTCCTGATGAAGATAATGGAATGAATGAGCTTGCTTACAATCAGGAGCCAGCTTTTCTCCCAGCCTTCAATTGTGCGTGAAATCAGATGAGGGGCTGGATTATTTCCTGcataattaaacacagaatgaAAATTGC

Function

symbol description
trim44 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in aniridia. Orthologous to human TRIM44 (tripartite motif containing 44).

NR:

description
PREDICTED: tripartite motif-containing protein 44

GO: NA

KEGG:

id description
K12020 TRIM44; tripartite motif-containing protein 44

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672166.1 True 1691 mRNA 0.54 7 14078012 14161299

Neighbor

gene id symbol gene type direction distance location
fjx1 NA coding upstream 66292 14008632 ~ 14011720 (+)
cd44 LOC106561308,LOC106573350 coding upstream 249590 13794413 ~ 13828422 (+)
pdhx pdhx coding upstream 312962 13694428 ~ 13765050 (+)
ehf ehf coding upstream 400936 13662809 ~ 13677076 (+)
rag1 rag1,LOC107750737,LOC107670202 coding upstream 1135050 12934452 ~ 12942962 (+)
ldlrad3 ldlrad3,LOC106573355 coding downstream 76740 14238039 ~ 14389321 (+)
rccd1 NA coding downstream 385498 14546797 ~ 14550920 (+)
LOC103025904 metap2,metap2b,LOC108428789,LOC108275287,LOC107569354,LOC107701059 coding downstream 394721 14556020 ~ 14562537 (+)
LOC103026417 LOC108428785 coding downstream 429304 14590603 ~ 14595936 (+)
slc25a3 slc25a3,slc25a3b,LOC107732290 coding downstream 436666 14597965 ~ 14605957 (+)
G73423 NA non-coding upstream 7628 14070044 ~ 14070384 (+)
G73422 NA non-coding upstream 9218 14068583 ~ 14068794 (+)
G73419 NA non-coding upstream 70877 14006822 ~ 14007135 (+)
G73417 NA non-coding upstream 72788 14004653 ~ 14005224 (+)
G73416 NA non-coding upstream 74586 14003072 ~ 14003426 (+)
G73415 NA non-coding downstream 1528 14162827 ~ 14163220 (+)
G73414 NA non-coding downstream 2045 14163344 ~ 14164340 (+)
G73443 NA non-coding downstream 3495 14164794 ~ 14165656 (+)
G73464 NA non-coding downstream 105477 14266776 ~ 14269724 (+)
G73468 NA non-coding downstream 162666 14323965 ~ 14324623 (+)
LOC103043719 NA other upstream 1180081 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 3451048 10272919 ~ 10626964 (+)
G72621 NA other upstream 3995872 10078579 ~ 10082140 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 4107970 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 4928593 9142899 ~ 9149419 (+)
G73533 NA other downstream 487530 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 730235 14891534 ~ 14921003 (+)
svip svip other downstream 1411003 15572302 ~ 15577533 (+)
G74169 NA other downstream 2125377 16286676 ~ 16288329 (+)
G74649 NA other downstream 4293552 18454851 ~ 18455197 (+)

Expression


Co-expression Network