ldlrad3 (ldlrad3,LOC106573355)


Basic Information

Item Value
gene id ldlrad3
gene name ldlrad3,LOC106573355
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14238039 ~ 14389321 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672167.1
GGCGAGGCGGAATGCGGGTGTGGAAAAAACGCCACCCCACACACGGCTGTCCCAGCGGAGGAGCCCAACCTCTCCGCAAGTCCGAAAACTTTGTCCTGCAGGGGGAAGAAAAAAGAGCGGAGCGGGAGCAGAGCGGAGCCGGGGCGATAAGTGGAAATCGAGGAACTATAAAACCGCCCCGGTTGTTGGCCCACAGCGGGGTGAAGCGGAGGGGCAGGCCGAAAAAAAGATACGGCGTGAAGGATGTGGGTCTGGTACCTCCTGCTCGGTTCGGGCACGGGCTCCAGCTCGGTCGACAGCCAACTTCTTCCTGGGAATAACTTTACCACCGAGTGCAACATCCCAGGTAACTTCATGTGCGGGGATGGGTTGTGTATCCCTGGAGGCTGGCAGTGTGACGGTTTTCCTGACTGCTTCGACAAGAGCGATGAGAAAAAATGCCCAAAGTCCAAGTGTGCGCCCACATTCTTCGCCTGTGCCAACGGGGTGCACTGCATCATCGGCCGCTTCCGCTGCAACAACTTCCGGGACTGTCCCGACGGCAGCGACGAAGACAACTGCActggTAATCCTCTGGTCTGCTCGTCAGCACGCTTCCACTGTCGGAATGGACGCTGTGTGGACCACAGTTTTCTCTGTAATGGGGAAGACAACTGCCAGGACAACAGCGATGAAGAGAACTGCTTTTCTACAGCAGAGTCTCCAGGCCAGGACTTCGTAACACTCGACTACCGGCTGCGCTACTACCCCAGCATCACCTACGCCGTGATAGGCAGCGCCGTCATCTTCGTCCTGGTGGTGGCGCTGTTAGCACTGGTCCTGCACCACCAGAGGAAGCGGAGCGTCCTGTTGCCCCGGGGGGTCCGCGGAGGcccccaccaccatcaccaccaccagcccCTGCTGCTCTCCAGGCTGGTGATAGTGGACAGGGGTCTCTCTCCACCCTCCTCCTCTCCATCAGGACTGTTCAGCTCAGCCCACAGCCTGCAGCTGCTCTCCAGCGCCCTCTACCCCCGAGGAGGTCCACTCGACTCACCGCCCTCATACTCACAGGCTGTAATGGACGTCAGTCGACCCCCGTGGTTTGACCTCCCACCTCCTCCGTACCCTCCTGACAACGGAGCTCCATGTGAGAGAGAGCCACCAATTTACGAAGTTTCTGCAGAAGAGCCTGAGACAGCCCTGACCCGAAGCGTCACCAGCAGCGCGAGAGCTGAGACAGGCCAGTCCCGCAACAACAGCTCCAGCTCCGGCTCTCGCTCTGGCGCCGGCCCCGGCTCAGGCTCAGGCTCTCGCGCCGGCTCCAGCTCCACAGAGGAGTCTCAGCAGCTGTAGCCCCTGCAGCGAGGAGACGGACACACTtgtacataaaacacacagacatataGAGGGGGACTGACCCTCTATAGCGACACAAGACCAGGAGACCCTGAGACCATGAGTCTCTTTGCGTAGGAAGGATATGAGCACTGTGGACTCTCAGCTGGACTTTCTTCAGGGTTACAACTCCCGCCACAAATGGACACTCTGTCTTCAGCTTCCTGCACTTTTTTCCTGTGTTGGTGGAAGGCGCCATCTTCTGGTGAACATGCGACATGACGGCTCATGAGAGAACATGAGGAAATGGTTCAGAAACTGAGCAGGAaggaagcagcagcagatcatATGAAGTGGATGCTTGCTTTACCAGGCCTCTGAGACGTATACCCTAAACACAGGGTACACTACATGACTGCGCAGACACTGCGTCGCGTCGGAAACGGGACGCAGTCGTGCATCGAGAAGTATAGAGCATCCTCAATAATAAGTATTGAGGAGCTTCCAAAAATGACTAAGCTGATTTCTGAGTTACAGACCGTTCATTcttcatattattaataatatgaattttcatttactttgttttgttttggtttcggtttttttcccctcatgtTTAACACTAAAAAATCCTACTAAACACTCACTATGCAATGTGACGTGAGCTGTATATGAGGTTTGaatgtgtaaaagagagaaggGCGATTTATGAGAAGAGTGATTTCATGTGTttacgaagaaaaaaaaaatctaccccATTTCCATCACTGAAGCACTTCAATGAATTACCTCTTTTTCATAGAAACTCAGAAACTCTTTGTTGTGGCCTTGCTCTTGAAGACAGATGGAACGAaattccattattattattattattattattattattatgattattattgctattataaTGCTGttgtagtattatttttaattctctgTCTTTATTCTACAACATTTCTACGAAATCTGTCTgaaatgaaagctttttatagTTCGTCTGAatctgtaaaagtaaaaatacagcaCCGCTCTCTTCTAAAAAACCGACTGCATGCTGTAGGAATAGTTGAATATTCTGAGATATTTGGACATATTTGGAGATATTCGGAGCATGGCATATTTAGTGGACATCAGGCATATTTAAAGCCACAGTGCCTTACACTCAGAAGCCTTTGGATTAACAACATGTAACTAAATGTCCATAACATCAAAAATCATCATCTTTGTCTGTTAAAGTCACATGATCACTAAGTATGTGACTCTTCTGAACTGGTCTCAGTTCAGATTTCCAGCTCCGACCCAGATAGAGAGTTTTGGGGCAGCTGAAACACGAAGCACATGGAGCAGATAGAACACTCAGACTTGCTATATTAGTTCATATGTGAATAAATGCAGCACCAAAGCCCATTTTTGACATTACttacataaataaagtaaataataaaaaaaaaataataataatctaggTCCAGAGACACTCTGGTTCTCTACGCTCTCAGTGCACACTTAACGTAAGgggctcttaaagggacagtggacacattactgaacactggccgtttgaactgtttttgtatttgaCAATCTGTGTATCTTGTTCAGTATTAGTATTAAATGTGCATTGTGTAAAATAGGTTTATACAAATTTATTAGACCCCCCCTATCAAAGAAATGACTCCTGGTTATAcaggttttatatatttcatgtaTTTGTAAACTGCATTTTGCAACTACACTCAGTTGTTAGCAAAGGTCTGTACTTTTCACTTCTCTTTGATCAAggtttgcattaaaaaaaacgcaAAGTCTCATATTTATACTCTCTTTACGTATTAAAATGAATCTGTCGACATTGAATTACGCGTCATCACTTATAATTATACAAACACTAGAAAAACAGCGCTGTAATTATTGACATGTATTTGTATTGATTGATTACTAAGATATACTTTAAAGAGGTACCATTCGATGCGATGcgtaccatttaaaaatgagtgaaatacaccctggaggaaaaaaaacaaatgtataaaaacaccTTGCGCAATGGTGtacaataatgtaataaattctTTTGAGTGTTAAAAGAACAAATtgaggtttttaattattttttttataaattatttcacATATTTCCATATTTAGGTCTGAAATCCATTTCTATGGCTgaattctgtgatttttttctatGTTCTCTGTTACAACCATATCTGGAAACTTCAGAAATGTGCATAAATGCAGACAAAACGAATGCACAGTATGAACAGAAGACTCCGTCCGAATCCGTATATTTAACACCGAGCATCAACGAGGCGTCAACTGACAGACAAAATGCGACGTGCGAAGATGacgactttttttgtttgttttattttaagttcagTAACAGCCTTGTTGTGAAGGATCAACTCAAACTTCTGAGCCTCttcctgtattttctttttttttcacctgacGTGAAGGCTTCTTCTCTAAATATATAATGCTCATGTGGGCGGTGGGAAGAAGTGGTGAGAAGTGGTATGTATTTAAGAATTAATCTTATGAacataaatattgtaaaatgaaaatatgatcAACTGGACAGAGTcaaagtgtgtaaatgaaaagtatcactttattatttctgtctttctgttgaCACctggccattaaaaaaaaaaaaagaagaagaaaacagtACTCCCAATGAGACATTTCCTCTGTTCCATTAGAAATGTAGAGATTAAATTTTACCAAAGCAGAAAATCATATTGTTATATGGAAtcaagttttaaaataaagactacAGCTCGTGTTATCACTGTACAGTATCTCTGGAGTGAAATCTTGTGTCTGTACCCGAAACTTCTTGTGTCTGTACAAAGAACCCAACATTATCTGCATTATTCTGCTTTTCAGATTTAAGTCTCTTTTTGTCTGCTTTTACAGCAGTTATTCATAAATAACTATTAACTACATtcgacaaataataataatatattaccaTACACttcatttaaagaaacaaaaaaattacaattcaaactttttcacagcattaaaaaaagaaggggGGCATTTGTACCTCATCCGAAACTCTCCTTGCCTGCTTCcttt

Function

symbol description
ldlrad3 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human LDLRAD3 (low density lipoprotein receptor class A domain containing 3).

NR:

description
low-density lipoprotein receptor class A domain-containing protein 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672167.1 True 4428 mRNA 0.43 6 14238039 14389321

Neighbor

gene id symbol gene type direction distance location
trim44 trim44,LOC107716865 coding upstream 76740 14078012 ~ 14161299 (+)
fjx1 NA coding upstream 226319 14008632 ~ 14011720 (+)
cd44 LOC106561308,LOC106573350 coding upstream 409617 13794413 ~ 13828422 (+)
pdhx pdhx coding upstream 472989 13694428 ~ 13765050 (+)
ehf ehf coding upstream 560963 13662809 ~ 13677076 (+)
rccd1 NA coding downstream 157476 14546797 ~ 14550920 (+)
LOC103025904 metap2,metap2b,LOC108428789,LOC108275287,LOC107569354,LOC107701059 coding downstream 166699 14556020 ~ 14562537 (+)
LOC103026417 LOC108428785 coding downstream 201282 14590603 ~ 14595936 (+)
slc25a3 slc25a3,slc25a3b,LOC107732290 coding downstream 208644 14597965 ~ 14605957 (+)
LOC103028647 ldhbb,LOC103028647,LOC108428782,LOC108275055,LOC105895664,LOC103366875,LOC106573069,LOC107744904,LOC107659842,LOC107589975,LOC107586539 coding downstream 218268 14607589 ~ 14614390 (+)
G73443 NA non-coding upstream 72383 14164794 ~ 14165656 (+)
G73414 NA non-coding upstream 73699 14163344 ~ 14164340 (+)
G73415 NA non-coding upstream 74819 14162827 ~ 14163220 (+)
G73423 NA non-coding upstream 167655 14070044 ~ 14070384 (+)
G73422 NA non-coding upstream 169245 14068583 ~ 14068794 (+)
G73514 dynlrb2,LOC103025073,LOC106573385 non-coding downstream 152877 14542198 ~ 14545513 (+)
G73529 LOC107551388,LOC107676462,LOC108428784,LOC107701063,LOC107754325 non-coding downstream 225097 14614418 ~ 14619324 (+)
G73527 NA non-coding downstream 248626 14637947 ~ 14638553 (+)
G73532 NA non-coding downstream 257122 14646443 ~ 14647562 (+)
G73566 NA non-coding downstream 286552 14675873 ~ 14676794 (+)
LOC103043719 NA other upstream 1340108 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 3611075 10272919 ~ 10626964 (+)
G72621 NA other upstream 4155899 10078579 ~ 10082140 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 4267997 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 5088620 9142899 ~ 9149419 (+)
G73533 NA other downstream 259508 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 502213 14891534 ~ 14921003 (+)
svip svip other downstream 1182981 15572302 ~ 15577533 (+)
G74169 NA other downstream 1897355 16286676 ~ 16288329 (+)
G74649 NA other downstream 4065530 18454851 ~ 18455197 (+)

Expression


Co-expression Network