LOC103024229 (LOC108428793)


Basic Information

Item Value
gene id LOC103024229
gene name LOC108428793
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14390685 ~ 14460388 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672168.1
CAGTCAGCAGTGGGACGCTGTGATAGAGGGAAGGAGGAAAAGAGgataaaagagagacagagcgagtgaacagaagaggaggaggtggaggagtgggGGGACTCTCCCCTCGTTGCTGAGGATGAAGGGATGACACATTTGGCAGGCTTGTTTGTGGGACTGTTGGTTGTGAGTGTGGCTGTGTCCGTGCTGCTCGGAGCTCGGATCGGTCAGTGACAGCCCCGCAGTGCTGATGAGCTCTCTGACCTCTGCCTGTCCGCAACTTCAATGACTTCTCTGACCCGCGGACCCCCGGTTGGAGTGCTTTTCTGGAGCAGCAGGAATTGCCCCCCCCACTCATCTTACTGTCGGTTTTCCTGTCTGAGACCACCTGACCTGACTTCAGCATCCTTCACTACAGCATGTTCGGACTAAAGGCTCCACTCTACTACCTGTCCGGCATGAGCCATGAGCCAAAGTCGCCATCGTTAGGGATGATCTCCACAGCAACGCGCACCACGGCGACCGTCAGCCCCCTCACCCCCTCCCCCATCAATGGAGTAGTGGTGGCCAATGGGAGTCCAGTGTCTCAGTCTGCTCACTCCGGATTCGCCGCTGCCCTCCGCAAACTGGCCAAACAGGCCGAAGAGCCTCGAGgCCCCGCCTCCATCAGTGGTGAGTCGTCGCCTGTTTCGTCTCCGGCCACCAATCACAGCTCTCCTGCAGGCACACCTAAACGGGGTCCCCTGGCTCCCCCCCCCGGGGCCCACAGTGTGTCCAGCACCCCGCCTGTGGTCACCATCGCACCGACCAAAACAGTGAACGGACTGTGGAGGAGCGAGGGGAGGCAGGCTGAAGCTGGACTCAGAGGGCCTGGCCGTGACCGAGTGACCTCAGACCCACCTGCTCCCCATCCTCCCAGTGCCCAGGAGAAGAGTGCTGCCTCTATTCCTCCTCACCTTCTAGGGGCACATTTCCCTTTTGGTTTGAACCCCAATGCAGTGATGCAGGACCCTCGTCTGCAAGCGCTAAATTTGTCCCGTCAGGTGCCTCATGTTCTGCAGTCCGGGGCAGTACCCGCAGGGGTCCCTGAGGAATACCTGCGGGGTGGGTTCCGCCCCTACGCCTCAGCGGAGGAGCTGCGTGTGCCCTCACTCCCCCTAGGGCTGGACCCCAGtactgcagctgcagctgctgcgTACTTCCACTCAGGATACCTGCCCCACCCTGCTCTCTCCTCCtacaggATGGATGACCCACTCTGTTTATCTGCTCTGCGCTCACCCTACTACCAGCTGGCACCGGGGGGCGCCCTGCACTCCCTTCACCCCTCCACGGCCCACCTCCACCTGCCTGGGGTCCGCTACCCTGCAGACCTCAGCCATCAGTCTCTGACAGCTCTGCAGAACGAGAGGCTGCAGATGGAAGATAAGCTTCGCCAGAGGGAGCGGGagcgagagaaggagagagtgcacgaggcagagagagagaaagagcgagagagggagcggGAGAGGGAGCGCGAGAGGGAACGAGAAAGAGAGCGCGAGAgggagcgggagagagagaaagagagagagcgggagagagagcTGGAGCGGCAGAAAGAGCGAGCGAAGGAGAGGGAGGTGCAGGCCGTGCGGGCCATGGAGAAGCACTGTCTCAACAAGGAgctgtacacacactctcacacacacacactccctcacaggCAGTACATGGAGGAGAGGGCCAAGCTGGTGGAGAGACTCGCACCAAACCGACCAGAGAAAACCAAAGAGGCCTCAGTCCATACTCCAAAGCCCCTACAGCCCAGCCTGTACTCATCCCTCCCCACCCCCAGCCTGCTGTCCTCACCTGGGGGGCGGCTGGGCCCGAATGTAAGTTCAGTTCAGGGGGCCCTGGCGTCCGCAGTGATGCTCCAGCGCCAGGGGGAGGAGGAGAGATGGCTGGCCAGGCAGAGGAGGCTGAGACCGGAGAAGGAGGACAGACAGGGTCCAGTGTCTGAGTTCAGACCTCACGCTCCAGAACCGGGTCCAGAGCTACAGGAACTGCACAGGGACACACAGAGGTCTAACTCTCATCACCAGGAACACACCATGAATGCCAGAGACCTACCTCACCATCTGGGGGCACCACCTCCTCTAATATCCCCCAAACCACCTCCACGGGACCAGCCTGCTAACCCTCCCACCACTCTCTGGAACCCCGTCTCCCTCATCGACTCTCCCTCACACATGCGTCGAGGATTCGACCCTCCGTTACCCCCCAGCTGTCCACCGCCGGGGCTGACCAAACACGAGCGGAGCGAGGACGGGGTCCGGAGGCTGGAGTGTCCAGATAGGGTCCCTCCCCAGAGAGCACATAACCTCCTGGAGCACAGCACCTTCCTGGCAGACCTGGAGAAATCCACTCAGAACATTCTGAGCCAGCAGAGGGTCTCACTGGCCCTGCCTGGACCCTACGCAGAGCTCAGGGGCTTGAAGAGAGCAGCTTCGCCCATCAGGGCCTTCCCTCAGGGCCCGGTCCGAGCGGTGGAGCCCATGCTGGTGTACGACCAGGTCCTGCAGCAGCACAGAAGACTCCTCAGCAAACTGGATCTGGAGGAGAAGAGACGCAGGGAGGCTAGAGAGAAAGgttaTTACTATGAACTGGATGACTCGTATGATGAGAGTGATGAAGAGGAGGTCAGAGCTCATCTCAGGAGAGTGTCTGAGCAGCCGCCTCTCAAACTGGACCAGTCAAAAGAGAAAATGGACTTCCTCAATGTGTTTGGATTGACCACCCTCTCCTGCCGTGCTGATCTGttggagaggaagaggaagaagagaaggaggaTGATGAGAGAGCGCAGCCCCTCTCCCGTACCTGCGCAAAAGCAGACACCCCCCACGCCCACTCCTCCCCCCGCCCTGTCCACTCGCTACAGCCCAGAGGACATGGACAGTGTGCCTGACCTGGAGGACAAGAAGAACTTCCTCAGTATGTTCAGCCTCAACCACCTCAGCCAAGAGCAGAGAATAGagaaagaaaaagtagaGAACCTGCTGGATGCCATCAAACAGAAAACTGTGACTCTCGACACACTCCGATacgctacacacacaccctgctccAGCCCGCCCTCTACAGCCTCAGAACCTACAGCACCCTCCACGCCCTGCCAGTCAAATGAAGTGCCCCTCCCACATTCCCGGAGCCCCACCCCTCCTGCTCCTCACAGACACCTGCACAATAACGGTCAACAATCTGACCTCCGTAGACTCCAGTCTGACCCACCACGCCTTAAAGAGCCCCCTCCACTGGCCCCTCTGCAGGAACACCCCCGCTTCGGAGAGGTTCACCCCATCAGGAGACCCCCCAGCCTGCAGGCCAGCCCCAGACCCCCGCTCATCCCTCTGAAGGAGCACGTAGCTGGACGGAACGGTCTCACCGTCCGGCCTCAGCACTGGGAGAGCACCAGCGCCGAGGAGTTCGCCCAGCAGTTCCACCAGTCTGTGCTGCAGTCCACTCAGAAAACCAAGCACAAGCACAAAGGTGGCGTCACAGAGCCAAACCACAGGGTTCACAACTCCGTGCATTACAACCCTTCAGACCACCAGGGGGCACCAAACAGATTACCTTATTCTTACACCAACGGCAACTCCTGCCACCCGCCAGCTCGCCCAGAGCCTTCAGGGCTGAGTGATGAGCGATCCGCTGAGGAAGAGTCCAGTGAGGaagatgatgacgatgatgaagaGGAGTCTTATCGTCCTAAATGGAAGGGAATTGAGGCCATATATGAAGCGTATCATGAGTACATAGAAGagAGGAGTATAGAGAGTGAGGTTCTGCAGAGTGAGTGCAGGAGGCTGGAGGCTCAGCATTACCATCTGAGTGTGACTGCTGATCAGCTCTCCATCAACATGGGGGAGCTCCTGGCACAGAGGCAGAGGCTGGCGCTGGAGAGAGAGCGCATGCAGGCGGAACTCGAGCACTTCAGGAAGTGTTTGGCGCTGCCGGCGTTGCACTTGCACAGGGGACACTATAAAGGGCCGCCCCCAAGGTGACCCCCTCTCACCCTGCTGACTGATCATTAGGGAGCTGGGCATCCAGCACCCAGCTCCTTTCACCTGAGAGAAGCCTGGGGAGAGGACTCTGCACTGAGGGGCGACagtgaggaggaagaggaggccTGACCttttggcagcagcagcagcagcagaagatgatgaaaatgatgaagatgatgaaggGGAAGAGAGGAATAACTGGCTGCTGTCATGAAGAAGAGTGGAAACCAGCATTGAGAAGCCTCAGTGGATTTAATCCCTACAGCCAGAGACTGAAACCCCCCAAAACAcccacaaaataaaaagaatattaataataatgacagCCAATCGCCAACCCACTGCACCTCCACCCAAACCCTACCTGCAGGGCCAGTGACGGAGCAGCAGCTACACAAAATCAGCCAATCAGTGACTGGAGGAGATAAGAGGAACTCTCTGTTTTAATTCGAATTTAACTCCACTCCATCACGTGCTTGAAACCACGTCCTTCTTCCACTCCTCCGCTCATCCACTCAGTACCCAAGATGCACTTAAAACTCAAAACTGTTGACTCAAACCTCTGCTACGAAAGTGTGGAACAGAAACGACTGGCGGAGTTTATTGTTTATACGTTTATTACTGATAGAAGttgttttgaaaatgtttgaGTTTCATTGCTTGGAAAATCTGATGTAAATATTGCAACAGAgttttgtatgattttattattCGGATTGATTATTTGACTTTGATTA

Function

NR:

description
PREDICTED: genetic suppressor element 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672168.1 True 4771 mRNA 0.57 17 14390685 14460388

Neighbor

gene id symbol gene type direction distance location
pamr1 pamr1,LOC102307280,LOC107570358 coding downstream 426659 13920173 ~ 13964026 (-)
slc1a2 slc1a2,slc1a2b,LOC107740049,LOC107570361 coding downstream 481082 13861550 ~ 13909603 (-)
LOC103022766 NA coding downstream 542543 13833553 ~ 13848142 (-)
rag2 rag2,LOC107581808,LOC107720771,LOC107673237,LOC107750738,LOC107670203 coding downstream 1441246 12944453 ~ 12949439 (-)
LOC103043208 furin,furinb,LOC107581806,LOC107720773,LOC107750721 coding downstream 1519303 12722277 ~ 12871382 (-)
cib1 cib1,kip1 coding upstream 90484 14550872 ~ 14554955 (-)
LOC103040849 LOC108428736,LOC104940688,LOC108274568 coding upstream 106522 14566910 ~ 14574221 (-)
LOC103041151 NA coding upstream 114407 14574795 ~ 14578518 (-)
LOC103028140 golt1bb,LOC107551388,LOC107676462,LOC108428784,LOC107754325,LOC107701063 coding upstream 154003 14614391 ~ 14619388 (-)
gpr22 gpr22,gpr22b,LOC108428781,LOC107754326,LOC107676451,LOC107561157,LOC107701065 coding upstream 179613 14640001 ~ 14649251 (-)
G73491 NA non-coding downstream 113579 14276679 ~ 14277106 (-)
G73434 NA non-coding downstream 318647 14070499 ~ 14072038 (-)
G73432 NA non-coding downstream 352317 14038069 ~ 14038368 (-)
G73429 NA non-coding downstream 383536 14006752 ~ 14007149 (-)
G73371 NA non-coding downstream 559928 13828718 ~ 13830757 (-)
G73509 NA non-coding upstream 7234 14467622 ~ 14468141 (-)
G73540 slc25a3,LOC107569351,LOC107732290 non-coding upstream 137563 14597951 ~ 14605960 (-)
G73606 NA non-coding upstream 215493 14675881 ~ 14676858 (-)
G73617 dus2,LOC107555686 non-coding upstream 284782 14745170 ~ 14748658 (-)
G73622 NA non-coding upstream 296511 14756899 ~ 14757248 (-)
G73172 NA other downstream 1769329 12610834 ~ 12621356 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other downstream 1825707 12548690 ~ 12564978 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other downstream 2339196 12048626 ~ 12051489 (-)
LOC111193052 NA other downstream 2845439 11520887 ~ 11545246 (-)
LOC111193093 NA other downstream 3164731 11224779 ~ 11225954 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other upstream 81808 14542196 ~ 14545536 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other upstream 248670 14709058 ~ 14797283 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other upstream 663426 15123814 ~ 15214284 (-)
LOC103040324 NA other upstream 920941 15381329 ~ 15414613 (-)
LOC103046265 pkp3 other upstream 1297915 15758303 ~ 15780678 (-)

Expression


Co-expression Network