rccd1


Basic Information

Item Value
gene id rccd1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14546797 ~ 14550920 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672169.1
TCTTTGACGCCGACAGTTTACTAAATTTAACTTGTCAATTTCAGTGTTATTTCTGCTATACATCAGCAAGTAAGgcctttaaaataaacatatgttGTGTTTTATAAGATAATAAGTCAATGAagtggtttggttttggttttaatGGCTTTGGGCAAATATTTCCCAgagtaaaaagtgaaaatagtGGAGACAGCTCTAAAGTGTTGAGTCCAGCTGCAGTGCTGAGTTTGTGCTCCTGTGGAGAAAAAACAAGCTTCAGCCCCAAAACCAAGAAAACAGAACCAGAGGACCAAAACATCAGGATTACTGCAGCTTGGAGCCGAAAAGCTGCCATCCACATACATGGCGGTAAACACGTGTGTGTATCAGGGCTGAGAGGTGATTCAGAGCAGCAGGATGAGGAGTTCAGAGGGCTGGTTGTGGAGAGTGAAGGGTGTGAGGACGCTCTGATCACTGAGAGGTATCTAATCCTCAGATTTGCTGACAGAGTGGAGTGCTGGAGCCAACTGACGCCTGCTGGAAAAGCTCTGGCCTGGAGCAGGGTGTGGGATAGCCCTGATAATACTGGTGATACTGTAACATTACCACTGGTGCCAGGAGGATACATAGAATCCAAACCTCCGTTCTTCAGACCCCTCTCTACCGAGCTGTGTGCCGTTAGCTTGGCGCTGGGCACTGAACATGCTGTTCTTCTGACAACATCTGGAACTGTCTACACCTGGGGATCTGGCAGTCATGGTCAGCTTGGTCAAGGCAGTGTGGTTTCAGAGGATGAGCCTCGAGCAGTAGAAGCTCTGTGGGGTGTCCCTATGAACCATGTGAGTGCAGGGGGCTGGCACTCGGCATGCATCAGCGCTGGTGGAGACCTCTATATATGGGGCTGGAACGAGAGTGGCCAGATAGGCCTGCCATCAAAAGGTCTTAACGATGAGAGTCAAAAAGGACAAAGCACTGGTAAAGATaaacaaactatgaataaaGGAGAAGATGATATATTCATTTCAATTCAAGCCTTCCCTGCCCTTGTGGATGTTCCGGAAATGTGTGAAATCAGGCAGGTGAGCTGTGGATCCCGCCATACAGCCGCTACCACAAGCACTGGAAATCTGTACACCTGGGGATGGGGTCACTATGGCCAGTTGGGTCATGGCTCAAAATGCAGTTCAGATCAACCCAAAGCCGTGGAGTACTTCTCAAAAAATGGGATGTTTGTAGAAGATGTTGTCTGTGGGCTGTGGAATACATTTGTGTCTGCTGTTCCAAAAGAGCATCGCTTCTCATGACCCCCAAACAAAGGGATCTATTTTCTACTGGAGTCCTTTCAATTGTGATGGACGATCATCAAGACAGCCATAATAAATGTAGGGAAACAACATgcgtttattaaatataaaatatctccaaaaatA

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672169.1 True 1412 mRNA 0.46 8 14546797 14550920

Neighbor

gene id symbol gene type direction distance location
ldlrad3 ldlrad3,LOC106573355 coding upstream 157476 14238039 ~ 14389321 (+)
trim44 trim44,LOC107716865 coding upstream 385498 14078012 ~ 14161299 (+)
fjx1 NA coding upstream 535077 14008632 ~ 14011720 (+)
cd44 LOC106561308,LOC106573350 coding upstream 718375 13794413 ~ 13828422 (+)
pdhx pdhx coding upstream 781747 13694428 ~ 13765050 (+)
LOC103025904 metap2,metap2b,LOC108428789,LOC108275287,LOC107569354,LOC107701059 coding downstream 5100 14556020 ~ 14562537 (+)
LOC103026417 LOC108428785 coding downstream 39683 14590603 ~ 14595936 (+)
slc25a3 slc25a3,slc25a3b,LOC107732290 coding downstream 47045 14597965 ~ 14605957 (+)
LOC103028647 ldhbb,LOC103028647,LOC108428782,LOC108275055,LOC105895664,LOC103366875,LOC106573069,LOC107744904,LOC107659842,LOC107589975,LOC107586539 coding downstream 56669 14607589 ~ 14614390 (+)
slc35b4 slc35b4,s35b4,LOC106561668 coding downstream 69551 14620471 ~ 14626071 (+)
G73514 dynlrb2,LOC103025073,LOC106573385 non-coding upstream 1284 14542198 ~ 14545513 (+)
G73468 NA non-coding upstream 222174 14323965 ~ 14324623 (+)
G73464 NA non-coding upstream 277073 14266776 ~ 14269724 (+)
G73443 NA non-coding upstream 381141 14164794 ~ 14165656 (+)
G73414 NA non-coding upstream 382457 14163344 ~ 14164340 (+)
G73529 LOC107551388,LOC107676462,LOC108428784,LOC107701063,LOC107754325 non-coding downstream 63498 14614418 ~ 14619324 (+)
G73527 NA non-coding downstream 87027 14637947 ~ 14638553 (+)
G73532 NA non-coding downstream 95523 14646443 ~ 14647562 (+)
G73566 NA non-coding downstream 124953 14675873 ~ 14676794 (+)
G73598 NA non-coding downstream 293525 14844445 ~ 14844664 (+)
LOC103043719 NA other upstream 1648866 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 3919833 10272919 ~ 10626964 (+)
G72621 NA other upstream 4464657 10078579 ~ 10082140 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 4576755 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 5397378 9142899 ~ 9149419 (+)
G73533 NA other downstream 97909 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 340614 14891534 ~ 14921003 (+)
svip svip other downstream 1021382 15572302 ~ 15577533 (+)
G74169 NA other downstream 1735756 16286676 ~ 16288329 (+)
G74649 NA other downstream 3903931 18454851 ~ 18455197 (+)

Expression


Co-expression Network