LOC103040849 (LOC108428736,LOC104940688,LOC108274568)


Basic Information

Item Value
gene id LOC103040849
gene name LOC108428736,LOC104940688,LOC108274568
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14566910 ~ 14574221 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672170.1
GTTACTCTGTCTCTTTAAATGTCACCAACTCATTTGGAACTAACTGCCTGACCAACCTGACCGGCAAATTCGTCTAACACTGTGTGCTGGTACAGAGCACCTGTAGCGCATGTTAtagcaaaaatgttttatttcctcagaatttatgatttatgatagGGCATTTATGATTTCATCAATGGATCAGGATTATTGTAATTTGGCAAAAAAGGAATCTCTCTTACACTGATCATCAACTATGGTTTACAGCAACCGCTATGGAGTGATTTTTGCCTGCACCTGTGGTGTGATCATGGGCGTGGGATTTGGTGCCAACCTCCTGGTCTTCTCCCTCTTCGCTAAACACAACACCCTGCGCAAGAACCGCCTGGATGCACTCCTCCTCAGTATGACCCTGGCAGATTTTTTCAGCCTGCTCCTGATCCCCTTTACCCTGCACTCTGCTGTCAGCTTCTCCTGGCCACTGGGCGACACGTCCTGCAAAATCTACCAGTTCCTGCTGGCTTTCTCCCTGGCTGCCAGCACCTACTCACTGTGTGCAGTCTCGATGGCACGGTTCATGATCATCACCAACCCATACCAGCCTCCTTCCACAGACCTGGTTGTGCTGATGCTCGTCATGGCCTGGGCTTTGAGCTTCTTCATCAGTCTGCCCTTGCGCATTTTTGCCACTAAGGAGAGCCTGGTGCCAGGTTTGACCAACTATACCTTCTGCCTGCCCACCATCCAGGAGCACCACTACCAAGTGGTACTAAGCCAGTTTGTGCTCTACTACTTTATACCAATGATGGTAATTGCTGTCAACTATGTACGCCTGGCTCTGTTCCTACACAAAAGCCCTGTGATGTCCACAGCCAGTGCCAGGAACACACGCAGAGCTTCCCTCATGGTGTTCCTTGCTGCTGGGACCTTCACTGTGTGCTGGCTGCCAGGTTACATCCTGGAGCTGTGTGTATATCTGGGCCTCTACATGCATGGCCAGTCCTGGGAGATGTTCTACTTCACCTGCACTGTGCTTCAGTACCTGCATCCCTGTGTTAACCCCGTTCTGTATGTGCTGCTATCCAAGCGCTACCGGAGCCAACCAGGAGTCTGGCTGTTTCACTGTAACCGTAACAAGGTGCACCCTCAGATCATCAGTGTGACTGAGAGCTTCTGATACTGAAAAACATGAGTACTCATGGCTATCTGAAGATTTTTAAAGAAGAAGCTtgaaataatgttttgtttttccatttaatttattaataatgctGATGTTGGTTTAAGAAAACTGATGTTGGCtgggtttcccaaaagcttCCTTTTACAAAGATAATAGGAAAATTGGCACCATAATGAACGCTCTCTACCAGTTAGGATAATCTTAATCTTAACACTAAGGTGCATTTGGAAAACTGAGCCCTGGTCTagaatttttatattatgtggGTATTTGTTTGGACTGcactgtatgtttttctttcacTGTACgttttcttctttacaaaaaacacaaaatgctaatgcttaacAAAACTATTTATAAAAGTCCCAAATacaactcaaacaaaccccaATCCATCATGGGCCACTCCatacttttaaattgtaaaattacagtacaaATTACGCTGTTCCTTTAATCTTTCTCCTTAAACTGCCTATGATTCTACATTGAGCTGTTCTTCCACTGACtgaacacacacccacacacacacacagtaatttacacagtcatacatacatacaagtgCACTGTGTTAAGCAGCTCTTGCACAAAACATGTGTACTCCcattttgacataatgtgaaacATAATGGCAgttgttttttaacattgtgtATCATGTTGAAtgaaccaataaaaatgctcaaaaatatcTTGGAATAAAAACTATTTACACTGACTTGCATTGAAAGATAAGATGTTAAAAAATGGACCCCCCATTGCCACTCCTGGAGTAGACTGATGAGTGGATTTGGACTGGAACAGGGACTGGGATGTGGCAGGACTGAACAAAGGGCTAGGTTGTGGGTGGATTACCCATTTCCACTTCTGACATGGCCCAGACCGGGGTGACCGGGACTGGTGAAAGGACTGGGTTGGGGGCTTGGACAATTATGGTAACAGGGACTGGGAGAAAAACTAGTGCCCAGAGAGTGATGGGGATTGGGAAAGGGATTGTGATGGGGGCTCGAATAGTGACAGAGACTGGTTGAGGGACTAGGATGGGGGCTTGGATTGTGACATGGTAAAAGCCATGGCTCTTCCTCTAACAGGACTAAGCTATTGACTGTGAAAAAATGACTTGAATTCTCTCCTCTGCACCGGCTCCactcttttaattaattttgatcttgatactgtataaaacatgtacctttgtcctgttttttttctttcattttgcaGACAAACAAAAATTCTGTATTAGCTGCAACAATCTGTGTAATTTGACCCAATTCGGGAAGTCCTGAGCATGAGCCAATACAGAGAATTAAGAATCATATCTGTGTTTTACTTAACTCCTTTGATGCAAACAGATGATACCAGTATAACTGACCCAGGCTTGCTTATTTGTTGAGATACCTTTTTCTGAACCTCAGTAGGAAAAAGGGGGAACAAAACTATTGCAACCTTTGTCATCTCAAATTATGGCTTCAAAAAATACTTTGATAAGTAATATATGATTGCCGTCTGGTGTTTGGTGGCAAGGGTAATGGCCACCCACCTGGTGATCTACAGGACTTAAAAGCGAACACTTAGTATCAAATACTGCAGAAGACCTGCCTGTGTCATGTGATGCACATTGGGGTCACTTAAATCTGGTTTTAAGCTACTTCTGTAGGAGTATATTCAATACAGTAAAGTAGAATGCTTATTTAGTGTAGTAATAATTTTACCTCTGGAGGCTCTGAAGTCTGACCCGTACCCGTTAAGGTCTCTGCCCATGAGTGAGCAGCAATGGTTTCCCACTATCATTCTGTCTGGGTTCAGCATGGGTACCAGCTTAAACACAAACTTGTCCATGAGCAGGGCTGGGTCAGGCAACACATCTAGCAAGAAGTCCAGAAAATGTTACATTATGCTTGCTTAAGatattaagattttttatttaactttgtcTTTTGAAGATCAGTTAAACTGCTTAATACCAGTTCCCAAACATTTGCATGTAACTGTACATAACTAACTTTTGAAGCTTTGCCTATTGCACAGCTACACTGATGTCGCTTACTGCAACGTTACAATGTTCACTTCACCCTGTAACATCATGTGCAAAAAGCTGCTTTTCTAATCAGCCTGTACTGTTATCCTACAATGCAAATACAaacttcagtattcagtatctccTCAACTGCTTTGCACAGTCATAACAAAGCACATTTTTCTTACACTTGGTGTGCTTGCAGAAGATTGCCACTCGTCCTTCAAACTGCAACATAGTGTCTTCAGGCCCAGACAGGGAGACTGAGGCCTGGCTTGGAAAGGACAGCCTGTCCTTAATTCGAGACCCTGAGAAATAATGCTCTTGACctgacacataca

Function

NR:

description
PREDICTED: galanin receptor type 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672170.1 True 3532 mRNA 0.43 2 14566910 14574221

Neighbor

gene id symbol gene type direction distance location
cib1 cib1,kip1 coding downstream 11955 14550872 ~ 14554955 (-)
LOC103024229 LOC108428793 coding downstream 106522 14390685 ~ 14460388 (-)
pamr1 pamr1,LOC102307280,LOC107570358 coding downstream 602884 13920173 ~ 13964026 (-)
slc1a2 slc1a2,slc1a2b,LOC107740049,LOC107570361 coding downstream 657307 13861550 ~ 13909603 (-)
LOC103022766 NA coding downstream 718768 13833553 ~ 13848142 (-)
LOC103041151 NA coding upstream 574 14574795 ~ 14578518 (-)
LOC103028140 golt1bb,LOC107551388,LOC107676462,LOC108428784,LOC107754325,LOC107701063 coding upstream 40170 14614391 ~ 14619388 (-)
gpr22 gpr22,gpr22b,LOC108428781,LOC107754326,LOC107676451,LOC107561157,LOC107701065 coding upstream 65780 14640001 ~ 14649251 (-)
LOC111193055 NA coding upstream 113468 14687689 ~ 14690107 (-)
prkar2b prkar2b,LOC108275286,LOC107732287,LOC107551419,LOC107676465 coding upstream 144333 14718554 ~ 14733253 (-)
G73509 NA non-coding downstream 98769 14467622 ~ 14468141 (-)
G73491 NA non-coding downstream 289804 14276679 ~ 14277106 (-)
G73434 NA non-coding downstream 494872 14070499 ~ 14072038 (-)
G73432 NA non-coding downstream 528542 14038069 ~ 14038368 (-)
G73429 NA non-coding downstream 559761 14006752 ~ 14007149 (-)
G73540 slc25a3,LOC107569351,LOC107732290 non-coding upstream 23730 14597951 ~ 14605960 (-)
G73606 NA non-coding upstream 101660 14675881 ~ 14676858 (-)
G73617 dus2,LOC107555686 non-coding upstream 170949 14745170 ~ 14748658 (-)
G73622 NA non-coding upstream 182678 14756899 ~ 14757248 (-)
G73605 NA non-coding upstream 223134 14797355 ~ 14800633 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other downstream 21374 14542196 ~ 14545536 (-)
G73172 NA other downstream 1945554 12610834 ~ 12621356 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other downstream 2001932 12548690 ~ 12564978 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other downstream 2515421 12048626 ~ 12051489 (-)
LOC111193052 NA other downstream 3021664 11520887 ~ 11545246 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other upstream 134837 14709058 ~ 14797283 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other upstream 549593 15123814 ~ 15214284 (-)
LOC103040324 NA other upstream 807108 15381329 ~ 15414613 (-)
LOC103046265 pkp3 other upstream 1184082 15758303 ~ 15780678 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other upstream 1892868 16467089 ~ 16470323 (-)

Expression


Co-expression Network