LOC103025470 (tln2,LOC108433629,LOC107659514,LOC107703225,LOC107739102)


Basic Information

Item Value
gene id LOC103025470
gene name tln2,LOC108433629,LOC107659514,LOC107703225,LOC107739102
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 17684670 ~ 17806900 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672212.1
CCCGTTTGAGCAGAGGTGAAGATGGTGGCCCTGTCGCTGAAGATATGTGTGCGGCAGTGCAATGTGGTGAAGACCATGCAGTTTGAGCCCTCCACCCCGGTGTACGATGCCTGTCGGATCATCAGAGAGAGAGTTCCTGAAGCCCAGACTGGACAAGCTTCAGATTATGGCCTGTTCCTGTCAGACGATGACCCCAGGAAAGGAATCTGGTTAGAATCTGGACGGACTCTGGATTACTACATGCTGCGAAATGGGGATATCTTAGAGTACAAGAAGAAACAAAGGCCACAGAAGATTAAAATGCTGGACGGGGCCATCAAAACCATCATGGTGGATGACTCCAAAACAGTGGGGGAGCTGCTCGTCACCATCTGCAGTAGAATAGgaaTCACAAACTATGAGGAATACTCGCTGATCCAGGAGCAGGGTGAGGAGAGGAAGGAGGATGGTATGGGCACTCTGAAAAAAGAGCGTACGCTGCTCCGAGAcgagaggaagatggaaaaACTCAAAGCCAAGCTCCACACAGACGACGACTTGAACTGGCTGGACCACAGTCGGACGTTCCGAGAGCAGGGGGTGGAGGAGAGCGAGACGCTGCTGCTCAGGAGAAAGTTTTTCTACTCTGACCAGAATGTGGACTCCCGTGACCCCGTCCAGCTCAACCTGCTTTACGTTCAGGCCAGGGATGACATCCTGAACGGCTCCCACCCCGTGTCCTTTGATAAGGCCTGTGAGTTTGCTGGAATCCAGGCGCAGATCCAGTTCGGCCCCCACGTGGAGCATAAACACAAGCCTGGATTCTTAGACCTGAAGGAGTTCCTGCCCAAAGAGTACATCAAGCAGAGAGGGGCCGAGAAGAGGATCTTTCAGGATCATAAGAGCTGTGGGGAAATGACCGAAATCGAAGCCAAGGTGAAATATGTGAAGCTGGCCAGGTCGCTGCGGACGTACGGCGTGTCTTTCTTTCTGGTGAAGGAAAAGATGAAGAGCAAGAATAAGCTGGTCCCCCGCTTGCTGGGCATAACGAAAGAGTCGGTGATGCGGGTGGACGAAAGGACCAAAGACGTAGTGCAGGAGTGGCCCCTGACTACGGTGAAAAGATGGGCCGCCTCCCCCAAGAGTTTCACTCTGGATTTTGGCGAGTACCAGGAGAGCTATTACTCTGTTCAGACCACAGAAGGAGAGCAGATCTCGCAGCTCATTGCCGGCTACATCGACATCATCCTCAAAAAGAAACAGAGCAAGGACCGCTTTGGCTTGGACGGAGACGAGGAGTCCACCATGCTGGAGGAATCGGTGTCTCCAAAGAAgtctactatcctgcagcagcagtttaacCGTGTGGGGAGAGTAGAGCATGGGTCAGTGGCGCTTCCTGGCATCATGCGCTCAGGCTCCATTGGTGGACCAGACAATTTTAACATGGGCAGCATGCCGGCCCCCCAGCAGCAGATCACTACAGGGCAGATGCACAGAGGACACATGCCTCCACTGagttTGGCCCAGCAGGCACTGATGGGGACCATTAACAGCAGTATGCAGGCAGTGCAGCAGGCTCAGGCTGACCTCGGGGAGGTGGATAACCTGCCTCCACTTGGACAAGACAGGGCATCCCGGGTTTGGGTCCAGAACAAAGTGGATGAATCCAAACATGAAATCCACTCACAAGTCGACGCCATCACTGCAGGAACTGCATCCGTAGTCAATCTTACCGCAGgTGACCCTACAGATACGGACTACACGGCTGTAGGCTgtgccatcaccaccatctcctCTAACCTGACGGAGATGTCTAAGGGTGTGAAGCTGCTGGCGGCTCTGATGGAGGACGAGGTGGGCAGTGGTCAGAACCTGATGTGTGCAGCCAGGACTCTGACCGGGGCGGTGTCTGACCTGCTGAGAGCCGTGGAGCCGGCGTCCGGAGAGCCCAGGCAGACGGTGCTGACAGCAGCGGGCAGCATCGGTCAGGCCAGCGGAGACCTTCTGCGGCAGatgggagagggagagactgacGAGAGATTCCAGGACATTATGATGAACCTGGCTAAAGCAGTAGCTAATGCGGCGGCCATGCTGGTGCTGAAGGCGAAGAACGTGGCCCAGGTGGCGGAGGACACAGTGCTGCAGAACCGCGTGATCACCGCTGCAACTCAGTGCGCCCTCTCCACCTCCCAGCTGGTGGCCTGTACCAAGGTGGTGAGCCCCACTATCAGTTCACCGGTGTGTCAGGAGCAGCTGGTGGAGGCTGGGCGTCTGGTGGAGCGTTCAGTAGAGGGTTGTGTGAAGGCTTGCCATGCTGCCTCAGAGGAGGCGGAACTGCTGAGACAGGTGAATGGGGCGGCGGGGGCGGTCAGCCAAGCCCTCAGTGATCTGCTCCAGCACGTCCGCCACTACGCCAGCTGTGGAGAGCCCATTGGCCGCTACGATCAGGCCACTGACACCATCATGACGGTCACTGAAAGCATCTTCACCTCCATGGGAGACGCAGgtGAAATGGTGCGGCAAGCCCGGGTTCTGGCCCAGGCCACATCAGACTTGGTGAACGCCATGCGCTCAGACGCTGAAGCAGAGGTAGATGTGGATAACTCCAAGAAGCTTCTGGCTGCAGCCAAACTGTTGGCGGATGCTACTGCCAGGATGGTGGAGGCGGCGAAGGGGGCTGCAGCACATCCAGAGAACGAGGACCAGCAGCAGAGGCTGAGAGAGGCTGCAGAGGGCCTGCGTGTAGCCACAAATGCTGCAGCTCAGAACGCCATCAAGAAGAAACTTGTCAACAGACTGGAGATTGCTGCCAAGcaggctgcagcagcagctacTCAAACCATCGCAGCTGCTCAGAATGCAGCTGCCTCCAACAAGAACACCGCCTCGCACCAGCAGCTCGTGCACAGCTGCAAGGCTGTAGCAGACCATATCCCTCAGCTGGTGCAAGGCATGCGAAGTAGCCAGGCCCAGCCAGAGGACTTGAGCGCCCAGCTGACCCTCATCATCGCCAGTCAGAGCTTCCTACAGcctgGCAGTAAAATGGTGACCTCATCAAAATCAGCCATTCCTACAGTAACTGATCAGGCCGCAGCTATGCAACTGAGTCAGTGTGCCAAGAACCTGGCCACCTGCCTGGCAGAGCTACGGACAGCTGCCCAGAAGGCACATGAAGCTTGTGGGCCTTTGGAAATAGACTCAGCACTGAACGCAGTCCAGACCCTGAAGAACGAACTCCAGGATGCCAAGATGGCCGCCTTTGATGGACAACTCAAACCTTTACCTGGAGACTCTTTAGAGAAGTGTGCTCAGGACCTTGGAAGTACCTCTAAGGCTGTGGGCTCGTCCATGGCCCAGCTGCTGACCTGCGCTGCCCAGGGCAATGAACACTACACGGgcgTAGCTGCAAGGGAGACTGCCCAGGCTCTGCGCACTCTAGCCCAGGCTGCTCGGGGAGTGGCTGCCTGCACAGCGGAGAGGCAGTCTGCAGCAGCCATGCTGGACTCAGCCAGCCATGTGATGGAAGGCTCAGCCATGCTCATCCACGAGGCCCACCAGGCACTGATCTCACCGGGCGATGCCGAGAGCCAGCAGAGACTAGCCCAGGTAGCAAAGGCTGTCTCCCACTCTCTGAATAACTGTGTGAACTGCTTACCTGGTCAGAAGGATGTGGACATGGCTCTGAGGAGCATCGGAGAAGCCAGCAAGAAACTTCTGGtggaaaatTTGCCTCCGTGCTCCAAGTCCTTCCAGGAGGCTCAGACGGAGCTGAATCGAACGGGCCGCTGAGCTGAACCACTCTGCAGGGGAGTGGTGCACTCTTCTCGAGGAACCAGCAGTCAGCTGGCTGTGGCCTCTGGCAAGTTTAGCCAGGACTTTGATGAGTTCCTGGATGCCGGCATCGAGATGGCTGGACACactcagTCCAAAGATGATCAGATCCAGGTGATTGGCAACCTGAAGAACATTTCCATGGCCTCCAGCAAACTGCTGCTGGCGGCTAAGTCCCTGTCTGTGGATCCCGGGGCTGCCAATGCCAAGAATCTTCTCGCAGCTGCAGCGCGAGCGGTGACAGAGAGCATTAACCAgctcatcacactgtgtacccaGCAGGCGCCAGGCCAGAAAGAGTGTGACAATGCTCTGCGTGAGCTCGAGGCTGTTAGAGGAATGCTAGACAATCCCAATGAACCAGTCAGTGACCTCTCCTACTTTGACTGCATAGAAAGTGTGATGGAGAACTCCAAGGTGTTGGGAGAGTCCATGGCTGGCATCTCTCAGCATTGTAAGACGGGCGATGTGCCAGCCTTCGGGGAATGTGTGGGTGTGGCATCCAAAGCGCTGTGTGGGCTGACGGAGGCAGCAGGCCAGGCCTCCTACCTCGTGGGCGTGTCAGACCCTAACAGTCAGTCGGGTCATCAGGGGCTGGTGGATCCTATTCAGTTCGCTAAAGCTAACCAGGCCATTCAGATGGCGTGTCAGAGCTTGGTGGACCCGGCCAGCAGTCCCTCCCAGGTGCTGTCTGCAGCCACCATTGTAGCCAAGCACACCTCTGCGCTCTGCAACGCCTGCCGGCTCGCTTCCTCGAAAACAGCCAATCCCGTCGCTAGGAGACATTTTGTGCAGTCGGCCAAAGAAGTGGCCAACACCACGGCCAATCTCGTCAAAACTATTAAGGCCTTGGATGGGGATTTTTCAGATGAGAACCGTGAAAGGTGTCGTGTAGCCACAACCCCCCTTATAGAGGCTGTTGAGAATCTCTCCACGTTTGCCTCCAACCCAGAGTTCGCCAGCATTCCTGCTCAGATAAGCAATGAGGGCTCAGCAGCTCAGGAGCCAATCCTGCGCTCAGCTCGCTCTATGTTGGACAGCTCCACCCAGTTACTGGAGACCGCTCGCTCGCTTGTGATCAACCCTAAGGATCCGCCCACCTGGTCCATCCTGGCAGGCCACTCCCGCACCGTGTCTGACTCCATCAAGAGCCTCATCACTGCTATCAGGGACAAGGCTCCGGGCCAGCGGGAGTGTGACCACAGCATCGACAGCATCAACAAGTGCATACGAGACATAGAACAAGCCTCCTTAGCAGCTGTAGGCCAGAGTCTGCCATGCAGAGATGACATCTCTCTAGAGGCTGTACAGGAGCAGGTAACTTCAGCTGTGCAGGAGATTGGCCATCTCATCGAGCCCATCTCTACTGCAGCTCGTGGAGAGGCCGCCCAACTTGGACATAAGGTAACTCAGCTGTCCAACTACTTTGAGCCTCTCATTGTGGCTTCAGTGGGACTGGCTTCAAAACACATGGACCACCAGCAGCAGATGAACATCCTGGACCAGACAAAGACTCTGGCAGAGTCCTCACTACAAATGCTGTATGCAGCCAAAGAGGGAGGAGGAAATCCTAAGGCATCCCATACCCATGATGCAATAGCGGAGGCAGCACAGCTGATGAAGGAGGCAGTAGATGACATCATGGTGACGCTGAACGAGGCTGCGAGTGAAGGAGGGATGGTAGGGGGAATGGTGGAGTCCATTGCTGAAGCCATGGGACGGATGGATGAGGGGACCCCACCGGAGCCAGACGGTACATTCGTGGATTACCAGACCACCATGGTGAAATTCTCCAAGGCTATCGCTATCACTGCGCAGGAGATGATGACGAAGTCTGTGACCTGTCAGGAGGAGCTGGGTGGCCTCGCGTCTCAGGTGACAGTGGACTACAGCCAGCTGGCCCAGCAAGGCCGTCTGGCCGCCGCCACAGCCGAGCCAGAGGAGgtGGGCTTGCAGATAAAGACCCGTGTGCAGGAGCTGGGGCATGGCTGCATTTACCTGGTGCAGAAGGCTGGAGCGTTACAGATGAGTCCCACAGACAGCTTCACCAAGAGGGAGCTGATTGAGTGTGCTCGCACTGTCACGGAGAAGGTGTCCATGGTGCTGTCTGCTCTACAGGCTGGTAATAAGGGCACCCAGGCATGCATCACAGCTGCCAGCTCAGTCTCTGGCATCATTGCTGACCTGGACACCACCATCATGTTTGCCTCTGCTGGCACACTCAACGCAGAGAACGAAGAGTCCTTTGCAGACCACAGGGAGAACATCCTGAAGACAGCGAAAGCTCTGGTGGAGGACACCAAGCTGCTCGTGGCTGGAGCTGCTTCCAGCCAGGAGAAATTGGCCCAAGCTGCGCAGTCCTCTGCCAAGACCATCACTCAGCTGACTGACGTGGTCAAACTCGGAGCTGCCAGCATGGGCTCCGAAGATCCAGAGACACAgGTGGTTCTGATCAATGCAGTGAGGGATGTGGCCAAAGCTCTAGCTGAACTGATAGGAGCCACTAAGTGTGCAGCAGGAAAAGCAGCAGACGACCCTTCCATGTACCAGCTAAAGAGTGCTGCCaagGTGATGGTGACTAACGTGACGTCTCTGCTGAAGACAGTCAAAGCAGTGGAGGATGAAGCCACTCGCGGGACGAGGGCTCTGGAGGCAACCATCGAGTTCATCAAACAGGAGCTGACTGTTTTCCAGTCCAAGGACACTCCAGAGAGAAGCACCACGCCAGAGGAGTTCATCCGCATGACCAAGGGCATCACTGTAGCCACGGCCAAAGCTGTAGCAGCAGGCAACTCTGGACAGCAGGAGGACGTGATCTCCACTGCCAACCTGAGCCGCAAAGCCATCGCCGACATGCTGATCACCTGCAAGCAAGCTGCATACCATCCGGAGGTGGCTGAAGATGTGAGGAATAAAGCCCTGCTCTACGGCCTGGAGTGTAGCACCGGATACATCGACCTGCTCGAACATGTCCTcctgGTCCTCCAGAAGCCTACAGCAGATCAAAGGCAGCAGCTGGCTGTGCTTTCAAAGAAAGTAGCCGGCTCAGTCACAGAGCTCATCCAGACTGCAGAAGCCATGAAAGGCTCAGAGTGGGTGGACCCGGAGGACCCTACAGTGATCGCTGAGACAGAACTGCTGGGGGCGGCTGCGTCTATCGAGGCCGCAGCCAAGAAGCTGGAGCAGCTTAAGCCCAGAGCCAAGCCTAAgCAAGCAGATGAGTCTCTGGACTTTGAGGAGCAGATTTTGGAAGCGGCCAAGTCAATTGCAGCAGCGACCAGTGCTCTGGTGAAGTCAGCGTCGGCCGCACAGAGAGAGCTGGTGGCTCAGGGAAAGGTGGGCTCCATCCCAGCCAATGCGGTGGATGATGGTCAGTGGTCCCAGGGTCTCATATCAGCGGCCCGTATGGTAGCGGCTGCCACCAGTAACCTGTGTGAGGCAGCCAATGCCTCTGTGCAAGGTCACGCCAGTGAAGAGAAACTCATCTCATCCGCCAAGCAGGTGGCTGCTTCCACCGCACAGCTGCTGGTGGCCTGCAAGGTGAAGGCTGACCAGGACTCTGAAGCCATGCGGAGACTACAGGCTGCAGGCAATGCAGTGAAGAGGGCATCGGATAACCTGGTAAAGGCAGCTCAAAAAGCAGCTTTCGACAAAGCAGAAGACAACAGCGTGGTGGTCAAGACTAAGTTTGTAGGTGGAATTGCCCAGATCATTGCAGCGCAGGAGGAGATGctgaggaaggagagagagctggaggaggCGCGCAAGAAGTTGGCCCACATCAGGCAGCAGCAGTATAAATTTCTGCCCAGCGAGCTGCGGGAGGACCACAGCTGAGCACCACTGATATGGGCACTCTGACAGACTGTGAGGTTATTAGAAAAACAGCGAGGTTGGCTTCTTACCTGCAAATGTCTGCCGTTAGCTTCGGAGCAGAACTTTCCTGAATCTTTGATTGGCTACTCTTCTCATAGACGGAGGCGGATGTCATGAGGTTTAAGTATGTGAAGGCTGTTCACTCAGAGAAGGGTGGGGCCGATACCACCGATCGGTCGTTCTCCTTACGAGAGGatggtgtttttgtgtttttgtttgtgattggttgctcttttcacacagggctatcgttctttatttttattatctggTTTGTCTTGGTTACTGATGCAGTTTGAGCTTCTAGCTTAGTGTGAGAAGAGCTGACTGtctttatgtttgtgtttgtgtggttgagcaagtgagagagagagagagagagagagagagagccagagagtgagtgagcatatatatatatatatatgtttaggtATGGGTGGGAATGCATAAATATgcgtatggacaaaagtattgggacacacctCTTTGAATGAATAAATTTAGGTGTTTTATTCATTCCGATTTCCATAGGTATATAAAATCAAGCACCTAGCCATACAGTCTGACTGTACAAACATTAGTAAAATAATTAGTCATTCTTAAATAATTACAGTGATTTTAGTGACTTCTACTAAACTTCTAGTAAATTCTTGTGTGGTACTGTTGGTTAAAATGTCCTCAATTTTAGATATTCCACCATCGAATGTGAGTGGCATTAGTAACAAAAACCCACAGCAACTCAGCCACGAAGTGTCAGACCATGTACAGAGTTACCGAGCTTTGTCTCTTTGGTGCACAAAAGCCGCCAAAGCTCGGTTGACCCAAAAACTGTGGACCAACTTCATAATAATGccatattaatgtatttagaaTAGGATGTCATAAAGGCTcctgtaaatgtaatataaagacGTCCTAATAcgtttgtccatatagtgtgaGTGATATGTGTGCCAGACATTGGAAATAATACAATCGAactcctaataataataatggtaatgatgatgataatataaataataacctTCACCTTATGATTGTACCTGTCAATAACTCCTACATTTGTTCTGTTAAGTACAAACAGATGCAATCCCTATTATCCTTGATGTCTACAGAGATCCGAAGATCCAAAAGCTCCAACTAAACTCTTTGTATGAGCTTTTATATCATACACTATAACACCCTCACATAAGCTTTCAGCTTTCATAACTTATGTAGGAGGAAGTTGCTCGCTTGAGTTCTCATCGGAGGCTCATTCATGAGTGATGATCTTCAGCGAGACTACTCATCATCTAAAAATGCCTTTGCTAAAGCACTCGACGTAAACATATCAACATATCATGAAGGCTACTTACCAGACTACGGTAGGATTGTGTTGTATTCAGACAATGAATTTTAAGACTACAAAGAAGCTGGAAGGCTTTGCtttgctgtattatttattggtCATTGAAATTGTTGCAGGtcacaaaaatagaaa

Function

symbol description
tln2 Predicted to enable integrin binding activity. Predicted to be involved in cell-cell adhesion. Located in focal adhesion.

NR:

description
PREDICTED: talin-2-like isoform X1

GO: NA

KEGG:

id description
K06271 TLN; talin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672212.1 True 9178 mRNA 0.53 57 17684670 17806900

Neighbor

gene id symbol gene type direction distance location
foxb1 foxb1 coding upstream 786739 16895315 ~ 16897931 (+)
gcnt3 NA coding upstream 886050 16796943 ~ 16798620 (+)
LOC103024840 LOC108433634,LOC108274563 coding upstream 889698 16748290 ~ 16794972 (+)
LOC103042878 znf467,LOC108274922 coding upstream 1092907 16563973 ~ 16591763 (+)
LOC103041748 rab8b,LOC108433638,LOC107598845,LOC107550224,LOC107659505,LOC107752325 coding upstream 1196381 16474883 ~ 16488289 (+)
tpm1 tpm1,LOC107712528,LOC107659515,LOC107739081,LOC103141214,LOC103379363,LOC103149890,LOC108237348,LOC103040917,LOC108441842,LOC107589334 coding downstream 38201 17845101 ~ 17866128 (+)
lactb lactb,LOC107712527,LOC107659517,LOC107589333,LOC107557987 coding downstream 61663 17868563 ~ 17876239 (+)
tmem266 tmem266,LOC107557978 coding downstream 80408 17887308 ~ 17961661 (+)
isl2 isl2,isl2a,LOC107589357,LOC107662481,LOC107712508,LOC107688926 coding downstream 172528 17979428 ~ 17986224 (+)
atp8b4 atp8b4 coding downstream 334113 18141013 ~ 18177415 (+)
G74413 NA non-coding upstream 207690 17476757 ~ 17476980 (+)
G74335 rora,LOC108433630,LOC106561150,LOC107659510,LOC107598851 non-coding upstream 676131 16989028 ~ 17008539 (+)
G74339 anxa2,anxa2a,LOC108433632,LOC107739086,LOC107724175,LOC107659511,LOC107550215,LOC107598852 non-coding upstream 720288 16957657 ~ 16964382 (+)
LOC111193101 NA non-coding upstream 797522 16831109 ~ 16887148 (+)
G74294 NA non-coding upstream 938275 16745859 ~ 16746395 (+)
G74461 NA non-coding downstream 154796 17961696 ~ 17964775 (+)
G74471 scaper non-coding downstream 187694 17994594 ~ 17995133 (+)
G74477 NA non-coding downstream 308683 18115583 ~ 18182105 (+)
G74494 ctdspl2a,LOC108411888,LOC108275364,LOC107557990,LOC107739078,LOC107662443,LOC107589331 non-coding downstream 313709 18120609 ~ 18123835 (+)
G74479 NA non-coding downstream 370795 18177695 ~ 18179770 (+)
G74169 NA other upstream 1396341 16286676 ~ 16288329 (+)
svip svip other upstream 2107137 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 2763667 14891534 ~ 14921003 (+)
G73533 NA other upstream 3035119 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 4786739 12871484 ~ 12897931 (+)
G74649 NA other downstream 647951 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 663804 18470704 ~ 18479345 (+)
G74832 NA other downstream 1275916 19082816 ~ 19085556 (+)
cadps2 NA other downstream 1333249 19140149 ~ 19322775 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other downstream 1653058 19459958 ~ 19462187 (+)

Expression


Co-expression Network