LOC103026996 (lamb1,lamb1a,LOC107662456,LOC107595246)


Basic Information

Item Value
gene id LOC103026996
gene name lamb1,lamb1a,LOC107662456,LOC107595246
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18577789 ~ 18615121 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672238.1
ACTTTGCCACTAGTTCAGAGCAGCTGGACAGAACCCGAGGCAGGAGACCAGCAGCTCAGGAGGCTCAGGGAAGCTGGACAGAGGGTGACCAGAGCCGGGTAACACACCCAGAGTCACCGACCAACACAGAAACATGATGATGTTGCAGCTCGCAGCCCTTTTATATTTAGGGGCTATCTCTCTGGCAGAAATACCTGAGCTCGGGGATGTCTGTACGGAGGGCAGCTGTTACCCTGCCACTGGAGACCTGCTGATTGGCCGAGCTCAACAGCTCTCCGCCACCTCAACCTGCGGCCTAGGAAAACCCGAACCTTTCTGCATCGTCAGTCATTTACAGGAAGAGAAGAAATGCTTTGTGTGCGATTCCAACAAGTCCTTCGATGAAACAGAGCACACAACCAGCCACAGAATCGAAAACGTGGTGACAACATTTGCCCCTAACCGACTCAAGACTTGGTGGCAGTCAGAAAATGgCATGGAGAATGTGACCATCCAGCTGAACCTGGAGGCCGAGTTCCACTTCACCCATCTCATCATGACCTTCAAGACGTTCCGACCCGCTGCCATGGTGATCGAGCGCTCGGCTGACTTTGGGAAGACGTGGCAGGTGTACCGTTACTTCGCTTATGACTGCGAGTCGTCCTTCCCCTCCGTCTCTCAGGGACCCATGAAGAAGGTGGATGATGTCATCTGTGACACTCGCTACTCTGACATTGAGCCGTCCACTGAGGGCGAGGTGATCTTCAGAGTGTTAGATCCAGTATTCAGGATTGAAGATCCTTACAGCCCCAGGATTCAGAACATGCTGAAGATCACCAACCTGAGAGTGAAGTTCACGAAGCTGCACACACTGGGAGATAACCTGCTGGACTCCCGTATTGAGATTAAGGAGAAGTACTACTATGCTATCTATGACATGGTGGTGAGGGGTAACTGCTTCTGCTATGGTCACGCATCTGAGTGTGCCCCTGTCGATGGAGCTGGAGAAATGGTGGATGGAATGgtcCATGGCCACTGTATGTGTAATCACAATACTATGGGTCTGAACTGCGAACGCTGTCAGGACTTTTACCATGACCTGCCTTGGAGACCCGCAGAGGGACGCAACACTAACGCCTGTAAAAAGTGCAACTGTAATCAGCACAGTGACTCCTGCCACTTCGACATGGCCGTGTATCAGGCTTCCAGTAACGTCAGTGGAGGAGTGTGTGACGACTGTCTGCATAACACCATGGGTCACAACTGTGAGCAGTGCAAGCCCTTCTTCTACCAGCATCACGAGAGGGACATCCGTGACCCCAACATCTGCGAGCCCTGTAACTGTGATCCTGTCGGCTCTCTGAATGGAGGAATCTGTGACGCTCTGACTGATGTCTCTCTCGGTCTGATCTCTGGTCAGTGTCGCTGTAAACCCAATGTGGAGGGCGAGCGCTGTGACCAGTGCAAGCAAGGTCATTACGGCATCAGTGATGACCCACTGGGATGTAAACcatgcacctgtAATGCCCTGGGGACAGTTCCTGGAGGAAGCCCTTGTGACACGGACTCTGGAGACTGTTACTGTAAGCGTTTGGTGACGGGGAGAGATTGTGACCAGTGCTTGCCTCAACACTGGGGGCTCAGCAATGACATGGACGGCTGCAGGCCGTGTGACTGTGACGTTGGAGGAGCTGTTAATAATGATTGTTCTGCAGAGACAGGCCAGTGTCAGTGTCGGGAGCATATGTTTGGAAGACGCTGTGACCAGGTGGAGTCTGGCTTTTACTTTATTGCTCTGGACCACTACGTTTATGAGGCAGAAGATGCGAAGTTTGGACCCGGTGTGACGGTTGTCCAGAGGCCATTCCCTCAGGATCGTACTCCGACCTGGACTGGCATTGGATTTGTGAATGTTCCAGAAGGAGCTTACCTGGAGTTTAACATTGACAATATTCCACACTCAATGGAGTATGACATCCTCATTCGCTATGAACCCCAGCTTCCAGAACAGTGGGAGGAAGTACTTATGACTGTCATCAGGCCTCGTGTAATCACTGCTGACAGCCGCTGTGCCAACACCATGCCAGACGATGACAACCAAATGGTGTCTCTCCATCCTGGCtccagATACATAGTGCTGCCCAGGCCAGTGTGTTTTGAACAGGGGTTGAACTACACCATCCGCTTGAGTCTTCCTCGCTACTCCACCAACAGTGACATCCAGTCCCCATACACACTCATTGACTCGATTGTGCTGATGCCTCACTGTAAGAACCTGGAGATTTTCTCCGGCTCCGGGTCAGAGGGAGGTGACCTGGAGACCAACAGTGCCTGGGATACCTTCCAGCGCTACCGCTGCCTGGAGAACAGCCAAAGCGTGGTGAAGACCCCCATGCCTGACATCTGCAAGAACTATATCTTCAGTGTGTCAGCTCTGCTGCATCAGGGGGCTAAAGcgtGTGCGTGTGACCCTCAGGGTTCTCTCAGTACTGTGTGTGACCCGAATGGAGGCCAGTGTCAGTGTCGGGCCAATGTGGTGGGCAGAAACTGTGACACGTGTGCCCCCGCCACCTTCCTCTTTGGACCTCTAGGCTGTAGACACTGTGAGTGCGATCCTCAGGGCTCACTGCATGCGTTCTGCCATGAGGCCACCGGTCAGTGTGAGTGTATTCCTGGAGCGTATGGGCGTCAGTGTGACCGATGCCTCCCTGGACACTGGGGGTTCCCTAACTGCCGGCCCTGTACCTGCAACGGCCACGCTGAGCAGTGTGACCCTCTGACTGGACAGTGCTTGAACTGCAAAGACCACACCACTGGCCACAACTGTGAGAGATGTTTGAATGGACATTATGGTGACCCCATCCTGGGCTCCGGAGATCACTGCCGCCCCTGCATGTGTCCAGATGGTCCAGGCAGCAGACGGCAGTTTGCTGGGGCGTGCTATAAGAACCATGACTCATACCAGGTGTTCTGTGTCTGCAATCAGGGCTATAAagGTGCCAGGTGTGATGAGTGTGCGCCTGGTTATTATGGCAATCCTCACGAGGCAGGTGGAGAGTGCCGACCCTGTCAGTGTAATAATAACATTGACCTGGTGGATCCGGGGTCCTGCGATGCCCACACCGGTGCCTGCCTCAAATGCCTCTACCACACTGAGGGAGAGGGCTGCAGTCGCTGCAAGTTGGGTTACTATGGCAACGCTCTTACCCAAAACTGCAGACggtgtgtgtgtaaccACATGGGTACCAGGAAGGAGACCTGTCCCTCTGTGGGCGAGTGCCACTGCGACCTGAGCAGTGGCCAGTGCCAGTGCCTGCCTAACGTGGTCGGACAGCACTGTGACTTGTGCGCTCCAGATACTTGGAACATGGCCAGCGGACGAGGCTGTGAGGCCTGTGACTGCGACCCCAATCACTCCTTCAGCTCCTCCTGCAATGAGTTAAGTGGACAGTGCTCGTGTAAGCCTGGGTTTGGAGGAAAAACATGCAGAGAGTGCAGGGAGCTGTTCTGGGGTAACCCTGAGATCAAATGTCATGcaTGTGACTGTGACCCCAGAGGAATTGCTGAGCAGCAATGTAACAAAGCCACagggcactgtgtgtgtgtggagggtgtgTCCGGCCCCCGCTGTGACACTTGCGCTCGCGGGTACTTTGGTGAGTTCCCGAACTGCGAACGCTGCCACCAGTGCTTCAGCGAGTGGGACATTATCATAGGAGACCTCACCAACCAGACCCACAGACTCATGCAGAAAGTCAACACCATTAAATCCAGCGGCATCACCGGACCCTACCAGGACACCATCAACAATGTGGAGAGGAGTGCTAACACCATCCGCGACATTCTGGCCCAGAACCCGGCAACCCAGCCACTCACTGAGATGCAGGCCCTGCTGGAGCAAGCTACAACCTTGATGGCTGAAATGAATGAGAAGCTGAATCAGACAGAGGAGTTCATGTCTCAGATCTCAGATGAAAACAACGGCACAAATACCAAGCTGGAGTCATTCAGTGAGGAGGCTCAAAAACTGCAGCGCACTGTCAAAGATCTGCAAGACCAAGTTGAGTTTATAAGGAACTCAGATGTGAGAGGAGCGTCTGACAGCATTAGCAGGTACTTCCAGCAGTCTGAAGCAGCAGAGGCTCGTGTGAATGCCTCCACCTCTGACCCGGAGAGCCTGGTGCAGCAGTCTGCCTCAGTGCGCAGGGAAACAGAAGACATGATGAACCAGACTAAAGAGGAGTTTAACAACAAGCAGGACGAGTATGCTACTGCTCTGGACAATTTAGCTGGTCAGCTGGAGACTCTGGACCTGTCTGATCTCAGTGAGAAGACCTGTGGCAGTCCTGCTGGCTCTGAGGCCTGTGCTGACTCCCCCTGTGGAGGCCTGGGCTGCGTGGATGCTGAAGGAATCAGGAAGTGTGGGGGCGAAGGATGTCTTGGCCTCACCACATTGGCCCATAATGCCTGGCAGAAAGCCAAGGACTTTGACCAGGACATCGTCAGTGCCATGCAAGAGGTCGACAAGCTCTCCAAGATGGTTTTGGAAGCGAAGGTGAAAGCGGACGAGGCTAAGCTAAATGCTCAGGAAGTTCTGCTGAAGACCAACGAGACCAAACAGCGTGTGGACCTCAGCAACGAAGAGCTGCGCAAACTCATCAAGCAGATTAGAGATTTCCTCACACAAGAGGGAGCCGATCTGGAGAGCATTGAGGCGGTGGCTAACGAGGTGCTGCAGATGCAGATGCCCACCACACCGGCACAGCTGCAGAACCTGACGGATGAGATCCGGGAGCGTGTGAACAGCCTGTCTGACGTGGAGGACATCCTCAACCAGAGTGCTACGGACATCCATAGAGCTGAGGACCTGCTGGAGCAAGCCCAAAAAGCCAGGAAAGAGGCAGCGGATGTGAAGAGCACAGCTGAGATGGTGCAGGAAGCTCTGGATCTGGCAGAAAAAGCTCAGACCACGGTGACAGAGGCACTGAAACAGGCCTCCACTGACATCAAAGGAACACAGGATCTGCTGGTGTCTGTGGAGTCAGAAACGGCTGATTCCGAGTTCAAGCTGAGTAATGCTACCGTCAGGCTACTACAGCTGGAGAGGGATGTAGCTCTGCTGAAAGAGAAAGCTCTTAATACCTCCATCAGTGCTGAGAAGACAGAAGAAGATGCAGATAGTATTAACGAGATGGCAGAGCAGCTCAAAAAGGATCTGGATACAGAGCTAAAGGataagtacagtagtgtggAGGAGCTGATCACTGAGAAAGCACAGGGAGTGGTAGATGCTAAGAAAAAAGCTGAGGTGCTTCAACAGGAAGCCAAAGACCTACTGCTGCAAGCAAGTGACAAACTACGGCTACTTAAAGATTTGGAAAAATCCTATGATGAAAACCAGAAGAAACTTGAGGACAAGGCCAACCAACTGGTGGATCTGGAAAAGGCTGTGAAAGAGCTGCTTCAGGAAATCAGCCAGAAAGTCTCTGTatacagcacctgtctgttttaACAACCGGCTCATTAGGCATAAGACAATCATTGATATATTAGtactacagtaaatacaaataatacaattttatatgCCAAAATAGAATGTAAGATGGATTTTAAAACTCCCTGAGCACAAACAAAGATACTAAATGAATGTAAACTCAAATGCCCAATATGGCCATGTGACTGCAAAGGCCTCTGCCAGTTCATTTGATTGGTTTCCAgtctatatttttaattcaaatgcTATTGTATTTTTTCTACAGATATCTGGACCTAATTGTGTATgacaataaagcaaataaagcgTTCCAGCAAGCAGCTGCAGTCCAGGACATTTTCTTCTGCTTTAAAACAGAATTCCGTCATTGGGTTTTTAGTGGACTGCATCAGTGCAGGACCTGTATTTACTAACCCGTCATGCTTTTTTTCATGCCAAGCAGTGCAAACTGAAGTTGCTCTCTAAGTTCTACCACTGAGTGAAAATGTCTAGAAATACTGGTGGTTCTGAGGGGTTTGAGAGTGTGTTTGGGTGGGTGTTGTATGGATTCAAACCATGTAGGTAATTTTGtacttttctaaaaaaaaataaagaagatgCATATTA

Function

symbol description
lamb1a Predicted to enable integrin binding activity. Predicted to be an extracellular matrix structural constituent. Acts upstream of or within several processes, including animal organ development; detection of light stimulus involved in visual perception; and fin regeneration. Predicted to be located in membrane. Predicted to be part of laminin complex. Is expressed in several structures, including digestive system; fin; nervous system; optic cup; and pectoral fin bud. Used to study coloboma. Human ortholog(s) of this gene implicated in autistic disorder and lissencephaly 5. Orthologous to human LAMB1 (laminin subunit beta 1).
lamb1 An extracellular matrix structural constituent. Involved in several processes, including endodermal cell differentiation; neurogenesis; and substrate adhesion-dependent cell spreading. Located in basement membrane and extracellular space. Part of laminin complex. Implicated in autistic disorder and lissencephaly 5.

NR:

description
PREDICTED: laminin subunit beta-1

GO:

id name namespace
GO:1902017 regulation of cilium assembly biological_process
GO:0007517 muscle organ development biological_process
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0007634 optokinetic behavior biological_process

KEGG:

id description
K05636 LAMB1; laminin, beta 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672238.1 True 6082 mRNA 0.52 33 18577789 18615121

Neighbor

gene id symbol gene type direction distance location
LOC103026700 lamb4 coding upstream 2422 18535874 ~ 18575367 (+)
LOC103030871 NA coding upstream 53614 18514747 ~ 18524175 (+)
ubl7 ubl7a,ubl7,LOC108436908,LOC108274434,LOC107703185 coding upstream 64474 18506606 ~ 18513315 (+)
LOC103030240 LOC103030240,LOC108436888 coding upstream 81334 18484454 ~ 18496455 (+)
LOC103026409 LOC108436903 coding upstream 118642 18456593 ~ 18459147 (+)
LOC103027288 NA coding downstream 17182 18632303 ~ 18634947 (+)
LOC103032021 NA coding downstream 22123 18637244 ~ 18644079 (+)
LOC103032349 znf800 coding downstream 38155 18653276 ~ 18668460 (+)
LOC103033497 grm8,grm8b,LOC107659486,LOC107698172,LOC107598887 coding downstream 57280 18672401 ~ 18838757 (+)
pot1 NA coding downstream 278106 18893227 ~ 18937127 (+)
G74668 NA non-coding upstream 43659 18533808 ~ 18534130 (+)
G74654 NA non-coding upstream 115153 18461444 ~ 18462636 (+)
G74535 LOC108436883 non-coding upstream 202250 18371716 ~ 18375539 (+)
G74510 NA non-coding upstream 364428 18211912 ~ 18213361 (+)
G74479 NA non-coding upstream 398019 18177695 ~ 18179770 (+)
G74672 NA non-coding downstream 9950 18625071 ~ 18626410 (+)
G74714 NA non-coding downstream 12528 18627649 ~ 18628028 (+)
LOC111193102 NA non-coding downstream 87600 18702721 ~ 18703887 (+)
G74770 NA non-coding downstream 342517 18957638 ~ 18970866 (+)
G74810 NA non-coding downstream 377557 18992678 ~ 18994863 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other upstream 98444 18470704 ~ 18479345 (+)
G74649 NA other upstream 122592 18454851 ~ 18455197 (+)
G74169 NA other upstream 2289460 16286676 ~ 16288329 (+)
svip svip other upstream 3000256 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 3656786 14891534 ~ 14921003 (+)
G74832 NA other downstream 467695 19082816 ~ 19085556 (+)
cadps2 NA other downstream 525028 19140149 ~ 19322775 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other downstream 844837 19459958 ~ 19462187 (+)
LOC103044129 NA other downstream 912091 19527212 ~ 19537617 (+)
LOC103028745 NA other downstream 1588498 20203619 ~ 20207955 (+)

Expression


Co-expression Network