LOC103028224


Basic Information

Item Value
gene id LOC103028224
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18978848 ~ 18987058 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672242.1
AATTAAGGAATAATGCCCTAAACTagtcacagaagaaactttgaaggagagattattaatgttttccaCAATGAATCACTGATTCTCACCGGAGAGCgatgatgctgcagtttttagaagcGGTCAAAACAACTGGCTGCGTCACACTGCTTACACAGAGAGGCACCATGATACCGTCTTCAgtcatcatcatcctcaaccTGGCTGCGTTGTGCACAACATTTGCCCTTTCAGAGACGTCAGCTCCACTTATTGATGAAAAGCCTTTTGTGATCATATGGAACGCCCCAACCTCCAAATGCCAACAACTGAAGATCCCATTGGACTGGTCTGCTTTTCAGGCCATTACCACACCAGCCAAAGTCCATAACCAAACCCTGACGCTGTTCTATAAGAAAAGAATAGGCCTCTTCCCTTATGTAGACCTTCAAACCATGGAACAGTACAATGGTGGCATTCCGCAAAGGGGTAACCTATCAGCCAGCCTAAAGAAAGCTGAAGCAGAGTTCACCCGCTATCTCCCAAGCTCTTCACCTGGCCTTGCTGTCATTGATTGGGAAGAGTGGCTTCCTTTCTTTGACCAAAATGTGGGCTTAAGAGAGATCTATAAGGAGCTGTCCCTTAACCACACTCTTGAGCAGGATGCTTCTCTAAGCAGGCAGCAGGCCAAAAGCAAAGCCAAGCAGCAGTTCCAGACCACTGCCAGAGATTACATGGAGAAGACCCTGAAGTTAGGAATTACTCTCAGACCACAGTATCTCTGGGGCTTCTACTTGTTCCCTGACTGCAACAACTATGATTTTGAGAATCCAGGCTATACAGGGAAATGCCCACAGAACACAACACAGTTAAATACTGAACTCCTCTGGCTCTGGAAAACAAGTACAGCACTGTTTCCTTCAGCATACATACCAGAGTCCATCAGTGGAAGCCAGAAGGCAGCACTGTTTGTCCGTCACCAGGTGAAAGAGGCACTGAGAGTCGCAGCCTTGTCTCAGCGACCCTATACTGCCCCAGTTTATGTGTACCTGAGGCCTTTGTTGCGGGACCAGAAAGAAGAGTACATGCAGGAGGTTGACCTGGTGAGGAGTGTTGGGGAGAGTGCAGCTCTAGGAGCTGCTGGATGTGTGCTGTGGGGCTCCAGTTATGATTATAATGACATGACATCATGTGAAGCCCTTTCTACATACTTGTCCAAGACTCTAAACCAGTACATTGTGAACATCACCGCTGCAACGCGTCTCTGCAGTGACATGCTCTGTCAGGGTAATGGACGCTGTGTTCGTAAAAACTCTGATTCTGATGACCACCTTCAGCTTAACCCCAAGAGCTTCAACATCCAGAACATTGCTGGGAAATATACTATCACTGGGACGCCTTCCAGCAGTGACCTGACTGACTGGGCCAACAAGTTCACCTGCCAGTGCTATGAAGGCAGAATCTGCTCTGGTAAAATATCATCTGGGTTATTATCCAGTATGTATgacagtaaaactgtgctcctGACAGTGCTCCTTCCAGTATGCTTACTGTTTAAATCAttgtagtttttaatgtttgttacAATACCTGGTTATGAAACTTTTACCACAACTGTTACAACaattaaagaa
>XM_022672244.1
aCAGGGCGGTTAGCTGACTTTAAATATGTGTCGCGTCgtccggcttaaatactgtgtatacactacaagcttgtGAGACTGACGAGGCTtggcgtggacaaagtgggtgggactggacgcgctggacgtccaactccgccttcccgcaggctgcagtcagtagcagttggttatttttcttcttctgctgccgttgctgaggaacgcctgctcagcttcctgtaattggtccgaaagtcCGCAGCATTCAGAAAAGCGCTTTTACACTGCAGGTCAAAACAACTGGCTGCGTCACACTGCTTACACAGAGAGGCACCATGATACCGTCTTCAgtcatcatcatcctcaaccTGGCTGCGTTGTGCACAACATTTGCCCTTTCAGAGACGTCAGCTCCACTTATTGATGAAAAGCCTTTTGTGATCATATGGAACGCCCCAACCTCCAAATGCCAACAACTGAAGATCCCATTGGACTGGTCTGCTTTTCAGGCCATTACCACACCAGCCAAAGTCCATAACCAAACCCTGACGCTGTTCTATAAGAAAAGAATAGGCCTCTTCCCTTATGTAGACCTTCAAACCATGGAACAGTACAATGGTGGCATTCCGCAAAGGGGTAACCTATCAGCCAGCCTAAAGAAAGCTGAAGCAGAGTTCACCCGCTATCTCCCAAGCTCTTCACCTGGCCTTGCTGTCATTGATTGGGAAGAGTGGCTTCCTTTCTTTGACCAAAATGTGGGCTTAAGAGAGATCTATAAGGAGCTGTCCCTTAACCACACTCTTGAGCAGGATGCTTCTCTAAGCAGGCAGCAGGCCAAAAGCAAAGCCAAGCAGCAGTTCCAGACCACTGCCAGAGATTACATGGAGAAGACCCTGAAGTTAGGAATTACTCTCAGACCACAGTATCTCTGGGGCTTCTACTTGTTCCCTGACTGCAACAACTATGATTTTGAGAATCCAGGCTATACAGGGAAATGCCCACAGAACACAACACAGTTAAATACTGAACTCCTCTGGCTCTGGAAAACAAGTACAGCACTGTTTCCTTCAGCATACATACCAGAGTCCATCAGTGGAAGCCAGAAGGCAGCACTGTTTGTCCGTCACCAGGTGAAAGAGGCACTGAGAGTCGCAGCCTTGTCTCAGCGACCCTATACTGCCCCAGTTTATGTGTACCTGAGGCCTTTGTTGCGGGACCAGAAAGAAGAGTACATGCAGGAGGTTGACCTGGTGAGGAGTGTTGGGGAGAGTGCAGCTCTAGGAGCTGCTGGATGTGTGCTGTGGGGCTCCAGTTATGATTATAATGACATGACATCATGTGAAGCCCTTTCTACATACTTGTCCAAGACTCTAAACCAGTACATTGTGAACATCACCGCTGCAACGCGTCTCTGCAGTGACATGCTCTGTCAGGGTAATGGACGCTGTGTTCGTAAAAACTCTGATTCTGATGACCACCTTCAGCTTAACCCCAAGAGCTTCAACATCCAGAACATTGCTGGGAAATATACTATCACTGGGACGCCTTCCAGCAGTGACCTGACTGACTGGGCCAACAAGTTCACCTGCCAGTGCTATGAAGGCAGAATCTGCTCTGGTAAAATATCATCTGGGTTATTATCCAGTATGTATgacagtaaaactgtgctcctGACAGTGCTCCTTCCAGTATGCTTACTGTTTAAATCAttgtagtttttaatgtttgttacAATACCTGGTTATGAAACTTTTACCACAACTGTTACAACaattaaagaa

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004415 hyalurononglucosaminidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672242.1 False 1613 mRNA 0.46 4 18978848 18987058
XM_022672244.1 True 1763 mRNA 0.48 4 18978848 18986645

Neighbor

gene id symbol gene type direction distance location
LOC103027908 NA coding downstream 1683 18975308 ~ 18977165 (-)
LOC103034129 NA coding downstream 5535 18970412 ~ 18973313 (-)
dld dld coding downstream 353653 18619136 ~ 18625195 (-)
parp16 parp16,LOC107662480,LOC107589319,LOC107595248 coding downstream 510735 18461375 ~ 18468113 (-)
LOC103028541 apba2,LOC108436900,LOC105892347,LOC106584731,LOC106530680,LOC103462423 coding downstream 530293 18430338 ~ 18448555 (-)
LOC103035727 hyal6,LOC108436892,LOC107698319,LOC107752305,LOC105896038,LOC107573512,LOC106561028 coding upstream 36632 19023690 ~ 19046218 (-)
LOC103036047 NA coding upstream 94090 19081148 ~ 19086198 (-)
asb15 asb15 coding upstream 99835 19086893 ~ 19095789 (-)
ptprz1 ptprz1 coding upstream 377540 19364598 ~ 19437614 (-)
LOC103041446 LOC108436924 coding upstream 475299 19462357 ~ 19473042 (-)
G74796 NA non-coding downstream 10938 18960804 ~ 18967910 (-)
G74792 gpr37,gpr37a,LOC107753714,LOC107598835,LOC105006086,LOC107752307,LOC107698235 non-coding downstream 28732 18948629 ~ 18950116 (-)
G74740 NA non-coding downstream 329077 18649439 ~ 18649771 (-)
G74735 NA non-coding downstream 338663 18637263 ~ 18640185 (-)
G74716 NA non-coding downstream 349443 18629061 ~ 18629405 (-)
G74910 NA non-coding upstream 292594 19279652 ~ 19341936 (-)
G74915 NA non-coding upstream 300282 19287340 ~ 19290287 (-)
G74928 NA non-coding upstream 338334 19325392 ~ 19418804 (-)
G74909 aass,LOC107753626,LOC107678990,LOC107752301,LOC107698474 non-coding upstream 357887 19344945 ~ 19350011 (-)
G74911 aass,LOC102787118 non-coding upstream 367035 19354093 ~ 19355051 (-)
G74791 NA other downstream 38384 18939174 ~ 18940464 (-)
G74591 isl2,LOC105022634 other downstream 949101 17982747 ~ 18029747 (-)
nrg4 NA other downstream 1093453 17877026 ~ 17885395 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other downstream 2508525 16467089 ~ 16470323 (-)
LOC103046265 pkp3 other downstream 3198170 15758303 ~ 15780678 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other upstream 5610 18992668 ~ 19008366 (-)
G74838 wasl,LOC105896696,LOC108275301 other upstream 83880 19070938 ~ 19072888 (-)
G75100 LOC108436948,LOC108275266 other upstream 872636 19859694 ~ 19865982 (-)
G75207 api5,LOC107696269,LOC107753602 other upstream 1040104 20027162 ~ 20032027 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other upstream 1097370 20084428 ~ 20100250 (-)

Expression


Co-expression Network