iqub (iqub)


Basic Information

Item Value
gene id iqub
gene name iqub
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19098516 ~ 19114949 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672249.1
CCACAGCAGCGCCCAAACACTGCGCGCACCTCAGCCTGGTCTTCTGAAACTGTTCCTCTAGCGATCACTTTCCTGTTTAGATGTGTATTTAGACAGCAAGCTGTTTTATCCGGGTTATATTGTGAGTGTGGGTCTGTCAGAGAGATGGAGGAGCGCGACACAGCCTCAGAACCAGACCACAGCACAGAGGCGGGGAACTTATACACAGCGGTTCCGCCCCAGAGCTCCTCACAGGTCCAGAGCTCCTCACAGACCCAGGCTGAACCGGAGGAACCCGCTGAGGAACAGCCTGATCAACAGCCTGAGATGAAAGTGGTGATCAGGACTTTAACCCCATCACTGACCTCAGATCAGGAGATCCAGCTGGATCCAGCACCTCCAGACCCCAGTCAGGACGCACTGATCCCGCAGGAGAGTGAAGTAATAATCCAGGAGTCTGATGATGTTGGAAACTCAACAGCAACAGTGAAAATATTAATTATGCCAGAGGGGCACATGATGACCATGGCTTTTACCATAGGCCTCACAGCTCAGGATCTAAAGAATCATTTTGCAAGTGAACTGAGAGTACCATCGGACATTATCCAGATCAAATTGAACGGCGTGGCTATAGAGAACCAGCAGACGCTGATGAGCCTGGGAGTGCAGCCCCACGGCACAGTCCAGTTGGAAATGAGCTCATTAGATCCTGAAAATTACCCCATCAAGCCAGTTAAACCACAGCAGGAGTGCAGCATGCCTGATGTCATTACTGTCAGAGTGCAGACAGACGTGAACACTTTTCAGGATGTGGTTgtggagatagagagagctaCTCAAAAGAAGCCTTTCCTGGGAGGATATCGTCACAAGATCAGTAAAACTGAGTATCACCATGCTGCAGTGCAGACTGTAGCCAAGAGGAGGCCCGATAGGGGTGTGGAGATGTTTAGCAAGGATACACAGACAGTGGTGCTGAAGAGCCAGGCTCAACAATGCACCATAAACACGTCCACTCAGATGACTAAGATTGGTCTGTACGTGTCCAACATGAAGGACAAGCTTCTAACTCCTGGTACCTACATCACTGCAGACCAACTCCACAGCACGAGGCTGAaagctGTAATAACGATACAGACGTACACTCGGCGCTGGCTGGCCCAGCGCTTGACTGCTCAGCTGAGGCTAGATAAGGAGCTGCAGCTGgtcaggatggagagagaggagaggaggaagatagaggagaaagaggagcaGATTAGGGATGAGTACTGCAGGAGAATGAACCCACGGAAAAAGGAGGACTTTGCTTTGCTCTACAACGCACTTGAAAagTGGAGGCAGGACGAGGTGGAGCGCATCAATGCCACTCTGAGTGGAGCTGAGCGGAAGGCAGCACTGTGTGTTCTCCTGAAGGAGGAGACACAGCTCATCGCTTCTATTGGATCCCACCGAATCACTGCAGGAGAGAGAAATCAGGAGAAAGCAGTGCAAGTCTTTCTCAACAAGTGTGCAGCCCCTAAGACATGGCGAGCGCTTGATGGAACGATGACCCAAATGGACACTCCAGAAAGCATCAGGGCTAAAGAGCTTCGAGATCTTTACAACAGCATCAACCTGAATTACTTAAGCCAGGAGGAGCGGCTTGACATCCTCctcactctcaaacacactgtCAAGgagCATGACTGTAAGCTAACCAAGCAGATAGTGGAGTTGATTGACAGGGAGGCTGACCTGCTGCtgagaggagtgaaggagagtaATCTGGAGGGGCTGAGGAAGAGAATAGCCACCCTCTTTCTTCAGTACATCAAAACCCCCACTTTCAACCCCCAGGTGTCCAGATTTTTGCAGGTGCCACAGGATCCAGCACAGCTGAAGAAGAACATCTACTTCTGTCGTGGCTGCAGTAATTACCTGCTCTCCACTGACTTCGCTCTGACGGCAAGCGCGCGGGTGGTGGGGCTTTGCCTGCAGTGCTCAGAGCTGGACAATGAGGCTCGATGCCAGAAGGATTCCTCTCATTACAAAACCATCCTCAAACGCCTACGTGAAACAGAGGCCGAATCCAGCCCAGACACCAAGATGACTTACCTCCTGCAGGAGCAGGATCTGCAGTATCTGGTGGATGTGGTGTGGGGGGCTCAGTCTGCTCTGTGTGCCTGGAATGACCTGCATGATCTGGTTCTGGTGCGCTGGGACAGGCACTGGGAGTGGAGCCCCTGGAACTGCATCCTGCTAACCAAAGACGAGGCTGCTACACACTACAAAGTTGAAAATATGGAGAAGGCATATGGGGAGGCGTTTATCCGTAACATCAGGCTTAAACACGCTCAGGCCCGGAAGTACTTCTCCCAGATACGCGCGATGGCTGAGTACGTTCATGATGGCGATTCAACTCCAGCAGCCCACAGCGACTTGCTGGTCACGAAACCCATCACTACATTAACCAAGTAGCTTCAGCAGAGGTCTTCAGGACTGTCTACAATTTTGCTTCTCAATGTATCTTGtctttatatatgtaaaactttAAACAATGCAATACACACTGATTTGCTAA

Function

symbol description
iqub Predicted to be involved in cilium assembly. Predicted to be active in acrosomal vesicle and motile cilium. Orthologous to human IQUB (IQ motif and ubiquitin domain containing).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K24838 IQUB; IQ and ubiquitin-like domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672249.1 True 2542 mRNA 0.51 12 19098516 19114949

Neighbor

gene id symbol gene type direction distance location
LOC103034777 wasl,wasla,LOC108275301,LOC107598884,LOC107659464 coding upstream 17117 19056787 ~ 19081399 (+)
gpr37 gpr37,gpr37a,LOC107753714,LOC107698235,LOC106584563 coding upstream 148168 18939095 ~ 18950348 (+)
pot1 NA coding upstream 161389 18893227 ~ 18937127 (+)
LOC103033497 grm8,grm8b,LOC107659486,LOC107698172,LOC107598887 coding upstream 259759 18672401 ~ 18838757 (+)
LOC103032349 znf800 coding upstream 430056 18653276 ~ 18668460 (+)
slc13a1 slc13a1 coding downstream 4598 19119547 ~ 19133880 (+)
fezf1 fezf1,fezf2,LOC102788291 coding downstream 215302 19330251 ~ 19334337 (+)
aass aass,LOC107698474,LOC107752301,LOC107753626,LOC107678990 coding downstream 226331 19341280 ~ 19362921 (+)
slc15a5 slc15a5,LOC107577043,LOC107598876,LOC107753711,LOC107575796 coding downstream 339104 19454053 ~ 19459308 (+)
cnot2 cnot2,LOC108275083,LOC108436929,LOC107678985,LOC107696293 coding downstream 378973 19493922 ~ 19503421 (+)
G74833 NA non-coding upstream 12285 19085803 ~ 19086231 (+)
G74831 NA non-coding upstream 15995 19082312 ~ 19082521 (+)
G74810 NA non-coding upstream 103653 18992678 ~ 18994863 (+)
G74770 NA non-coding upstream 127650 18957638 ~ 18970866 (+)
LOC111193102 NA non-coding upstream 394629 18702721 ~ 18703887 (+)
G74951 fnbp4,LOC107598873,LOC107681673 non-coding downstream 363049 19477998 ~ 19481987 (+)
G74958 kiaa1033 non-coding downstream 392169 19507118 ~ 19510980 (+)
G74970 NA non-coding downstream 412711 19527660 ~ 19527911 (+)
G74982 NA non-coding downstream 425971 19540920 ~ 19543821 (+)
G74992 NA non-coding downstream 478616 19593565 ~ 19595241 (+)
G74832 NA other upstream 12960 19082816 ~ 19085556 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other upstream 619171 18470704 ~ 18479345 (+)
G74649 NA other upstream 643319 18454851 ~ 18455197 (+)
G74169 NA other upstream 2810187 16286676 ~ 16288329 (+)
svip svip other upstream 3520983 15572302 ~ 15577533 (+)
cadps2 NA other downstream 25200 19140149 ~ 19322775 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other downstream 345009 19459958 ~ 19462187 (+)
LOC103044129 NA other downstream 412263 19527212 ~ 19537617 (+)
LOC103028745 NA other downstream 1088670 20203619 ~ 20207955 (+)
G75383 morc2,LOC107754332,LOC107701074,LOC107674835 other downstream 1908307 21023256 ~ 21025128 (+)

Expression


Co-expression Network