fezf1 (fezf1,fezf2,LOC102788291)


Basic Information

Item Value
gene id fezf1
gene name fezf1,fezf2,LOC102788291
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19330251 ~ 19334337 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672253.1
gagcgcGTGGCCAGAcgctgcgctgcgctctctccctctatcaTTGGTGAGTTGGAGGCGCGTTATTGGCCAACACGCCCCGCTGAGGTGCGCATAAGTGCCGATCGCCAGCGGTGAGGCTGCGCCACGCTCTCCGCGCGCTCACAGGGAGCCAAACTCAGGCGCACCGGCACGCACGCGCGCTCGCACAcgtactcactcacacagggggagagtgagagagaaatagtggGGAATaggaaaaagaaggagagaaagagtgagggagagagagcgctgcGCTCGGAGGCGATGGACGGCGCGCGCTTCTCCTCAGCGGGAGCGCCCGGCTCCCCTCCGCCACCGCGCGGCCCCGCGTGCTCCATCACCGCCGCTGCCGTAAAGCCGCTGGCCTTCTCCATTGAACGGATCATGGCGCGCAGCCCGGAGCCGCGCTCGATGCCGTTGTTCCCGGCGCGCGCCTCTCCCCCCGCGCTGCGCTGCGTGCTGCCGCTTGTGCCCCTCGCCTATGAGGCCGCGCACGGGCTCGAGCTCGGTGGCGGCGGCGCTCTGCACGCGCCTACCTCTCAAACATTCTCccagcaccagcaccaccatcaccaccaccaccagcagcagcacgcGCACGTGCACGCGCCCGGCGGTGGCGAACTGATGGGCTACAAACACGAGCACAGCCACTACAAACTGTTCCGGCCGCGCGTGCTCAGTCCGGTCACGGCGCACGCCTTGCAAGGCGCCGCGCGCTACGTGAGTTGTGCGGCGGAAGGCGCGTGCGCGCCCGCTGCTGCTGCGGCGGCGGGGCTGCTCGGGCTACATCCAGTGGCCTCGTACTTTCTGAACGGACCGCTGCAGAAGGCCGCGTGGGTGGAGAAGGCGCGCGCGGGAGCCGAGAGCGCGCACCTGCTCACAGAGAAACTCCTGAAGAACTCGGCCAAGATCGGCGGGGCGCCTCACAGCAAACCCAAAGTGTTTACCTGCGAAGTGTGCGGCAAGgtGTTTAATGCACATTATAATTTGACACGCCACATGCCCGTGCACACCGGCGCCAGACCGTTCGTGTGTAAAGTGTGCGGCAAAGGATTTCGCCAGGCGAGCACTCTCTGCCGACACAAAATTATACACACTCAGgaAAAGCCTCATAAATGCACTCAGTGTGGGAAAGCGTTTAACCGGAGCTCCACTCTCAACACACACGCGCGCATACACGCCGGATACAAACCGTTTGTGTGCGAGTTCTGCGGGAAGGGCTTTCACCAAAAAGgCAACTATAAAAATCATAAACTGACCCACAGCGGAGAGAAACAGTTTAAGTGCAATATCTGCAACAAGGCCTTCCACCAGGTGTACAACCTCACCttccacatgcacacacacaacgaCAAGAAGCCCTTCACCTGCCCCACGTGCGGCAAGGGCTTCTGCAGAAACTTTGATCTTAAAAAACACATCCGGAAACTGCACGACGTTTCCCCAGGACCACCCTCaccgcccacccctactgccgCCCACACACAGTGAGCTTCATTCAGCACTGCCCGCGCGCCCGCGCCCTGGACCTactgcatcatcatcattattatcatcatcatcatctgccGCATCCTCATCTTCTtcgctcttaaaaataaaggcgcCAATTTTTTTCTCTTACTGTTTTTGGAGTAATGCCATAAAAGAACCACATTTGGTTCTCTTTtggtttttgttctgtttaaagAACAGTCCAGAACCGTTTGGgaccctttatttttaagagtgcacaACGCCTGCTCCACCTTCTTCTGCTTTTGGCATTATCCTGCGCGCGACCACCGTGCGTGACCCCAACACAGCGGCTTTTAGGGGGTTTAAtacgtttttttctttcacaaCCTTCCTTTCACTCTCAGGGTTTAATCTAagttgtacattttattatattatacgttttatttatttgccatTGCAATGATGTCGTTAAGTTATAGAGAGTGAACTCTGATATACAGGAAAATTACTGCTGTGTACATTTCCGCATTTTGTACAAAGTGTTTCTTATTTATAGtccatttttgttgttgttaaatCAGCGTGAATTATGCAAGGGTTTGTTGTAAATAATTACCACTGACACCAGATTTCTCATTAAACCCATAGATTATAAATCACTATAAGAAGgggaaatacagtaaaataaagtatgGTTTATGTTGAAGCGTTTCCAACTCGACGTTCGAGGCATGTCGTTCAGCCTGTTCTGCTGCTGCCTAAAGGCGTTTCGGACCCCAGTAATGGAGGAGTAATGGGACTTGTGCCTAATGAGAAAATGAACTATAATTAGGGAGCGGAGATAAACATTGTGGATGGATgggctgctgctggtggtggtgggaggGAGGGTGTGAGGACCACCACGTCTCAGCTCACGTCCCTGTGAGTGCGAAGGGTGAGTGATTTTCCCCTCTGTACACGTAAAGGATCAGTGAAATGTGTAACGTCTAAAGAAAGGCCTATGCAGAAGTGTGGA
>XM_022672254.1
gtgtgagcgcGTGGCCAGAcgctgcgctgcgctctctccctctatcaTTGGTGAGTTGGAGGCGCGTTATTGGCCAACACGCCCCGCTGAGGTGCGCATAAGTGCCGATCGCCAGCGGTGAGGCTGCGCCACGCTCTCCGCGCGCTCACAGGGAGCCAAACTCAGGCGCACCGGCACGCACGCGCGCTCGCACAcgtactcactcacacagggggagagtgagagagaaatagtggGGAATaggaaaaagaaggagagaaagagtgagggagagagagcgctgcGCTCGGAGGCGATGGACGGCGCGCGCTTCTCCTCAGCGGGAGCGCCCGGCTCCCCTCCGCCACCGCGCGGCCCCGCGTGCTCCATCACCGCCGCTGCCGTAAAGCCGCTGGCCTTCTCCATTGAACGGATCATGGCGCGCAGCCCGGAGCCGCGCTCGATGCCGTTGTTCCCGGCGCGCGCCTCTCCCCCCGCGCTGCGCTGCGTGCTGCCGCTTGTGCCCCTCGCCTATGAGGCCGCGCACGGGCTCGAGCTCGGTGGCGGCGGCGCTCTGCACGCGCCTACCTCTCAAACATTCTCccagcaccagcaccaccatcaccaccaccaccagcagcagcacgcGCACGTGCACGCGCCCGGCGGTGGCGAACTGATGGGCTACAAACACGAGCACAGCCACTACAAACTGTTCCGGCCGCGCGTGCTCAGTCCGGTCACGGCGCACGCCTTGCAAGGCGCCGCGCGCTACGTGAGTTGTGCGGCGGAAGGCGCGTGCGCGCCCGCTGCTGCTGCGGCGGCGGGGCTGCTCGGGCTACATCCAGTGGCCTCGTACTTTCTGAACGGACCGCTGCAGAAGGCCGCGTGGGTGGAGAAGGCGCGCGCGGGAGCCGAGAGCGCGCACCTGCTCACAGAGAAACTCCTGAAGAACTCGGCCAAGATCGGCGGGGCGCCTCACAGCAAACCCAAAGTGTTTACCTGCGAAGTGTGCGGCAAGgaAAAGCCTCATAAATGCACTCAGTGTGGGAAAGCGTTTAACCGGAGCTCCACTCTCAACACACACGCGCGCATACACGCCGGATACAAACCGTTTGTGTGCGAGTTCTGCGGGAAGGGCTTTCACCAAAAAGgCAACTATAAAAATCATAAACTGACCCACAGCGGAGAGAAACAGTTTAAGTGCAATATCTGCAACAAGGCCTTCCACCAGGTGTACAACCTCACCttccacatgcacacacacaacgaCAAGAAGCCCTTCACCTGCCCCACGTGCGGCAAGGGCTTCTGCAGAAACTTTGATCTTAAAAAACACATCCGGAAACTGCACGACGTTTCCCCAGGACCACCCTCaccgcccacccctactgccgCCCACACACAGTGAGCTTCATTCAGCACTGCCCGCGCGCCCGCGCCCTGGACCTactgcatcatcatcattattatcatcatcatcatctgccGCATCCTCATCTTCTtcgctcttaaaaataaaggcgcCAATTTTTTTCTCTTACTGTTTTTGGAGTAATGCCATAAAAGAACCACATTTGGTTCTCTTTtggtttttgttctgtttaaagAACAGTCCAGAACCGTTTGGgaccctttatttttaagagtgcacaACGCCTGCTCCACCTTCTTCTGCTTTTGGCATTATCCTGCGCGCGACCACCGTGCGTGACCCCAACACAGCGGCTTTTAGGGGGTTTAAtacgtttttttctttcacaaCCTTCCTTTCACTCTCAGGGTTTAATCTAagttgtacattttattatattatacgttttatttatttgccatTGCAATGATGTCGTTAAGTTATAGAGAGTGAACTCTGATATACAGGAAAATTACTGCTGTGTACATTTCCGCATTTTGTACAAAGTGTTTCTTATTTATAGtccatttttgttgttgttaaatCAGCGTGAATTATGCAAGGGTTTGTTGTAAATAATTACCACTGACACCAGATTTCTCATTAAACCCATAGATTATAAATCACTATAAGAAGgggaaatacagtaaaataaagtatgGTTTATGTTGAAGCGTTTCCAACTCGACGTTCGAGGCATGTCGTTCAGCCTGTTCTGCTGCTGCCTAAAGGCGTTTCGGACCCCAGTAATGGAGGAGTAATGGGACTTGTGCCTAATGAGAAAATGAACTATAATTAGGGAGCGGAGATAAACATTGTGGATGGATgggctgctgctggtggtggtgggaggGAGGGTGTGAGGACCACCACGTCTCAGCTCACGTCCCTGTGAGTGCGAAGGGTGAGTGATTTTCCCCTCTGTACACGTAAAGGATCAGTGAAATGTGTAACGTCTAAAGAAAGGCCTATGCAGAAGTGTGGA

Function

symbol description
fezf2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and zinc ion binding activity. Acts upstream of or within several processes, including nervous system development; neuronal stem cell population maintenance; and regulation of Notch signaling pathway. Predicted to be active in nucleus. Is expressed in several structures, including forebrain; neural keel; optic vesicle; retina; and ventricular zone. Orthologous to human FEZF2 (FEZ family zinc finger 2).
fezf1 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cell differentiation and nervous system development. Predicted to be located in nucleus. Is expressed in hypothalamus. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 22 with or without anosmia. Orthologous to human FEZF1 (FEZ family zinc finger 1).

NR:

description
PREDICTED: fez family zinc finger protein 1

GO:

id name namespace
GO:0009987 cellular process biological_process
GO:0005488 binding molecular_function

KEGG:

id description
K24502 FEZF; Fez family zinc finger protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672253.1 True 2509 mRNA 0.54 4 19330255 19334337
XM_022672254.1 False 2378 mRNA 0.54 3 19330251 19334337

Neighbor

gene id symbol gene type direction distance location
slc13a1 slc13a1 coding upstream 196371 19119547 ~ 19133880 (+)
iqub iqub coding upstream 215302 19098516 ~ 19114949 (+)
LOC103034777 wasl,wasla,LOC108275301,LOC107598884,LOC107659464 coding upstream 248852 19056787 ~ 19081399 (+)
gpr37 gpr37,gpr37a,LOC107753714,LOC107698235,LOC106584563 coding upstream 379903 18939095 ~ 18950348 (+)
pot1 NA coding upstream 393124 18893227 ~ 18937127 (+)
aass aass,LOC107698474,LOC107752301,LOC107753626,LOC107678990 coding downstream 6943 19341280 ~ 19362921 (+)
slc15a5 slc15a5,LOC107577043,LOC107598876,LOC107753711,LOC107575796 coding downstream 119716 19454053 ~ 19459308 (+)
cnot2 cnot2,LOC108275083,LOC108436929,LOC107678985,LOC107696293 coding downstream 159585 19493922 ~ 19503421 (+)
LOC103044412 NA coding downstream 206124 19540461 ~ 19560568 (+)
amn1 amn1 coding downstream 228717 19563054 ~ 19569137 (+)
G74833 NA non-coding upstream 244020 19085803 ~ 19086231 (+)
G74831 NA non-coding upstream 247730 19082312 ~ 19082521 (+)
G74810 NA non-coding upstream 335388 18992678 ~ 18994863 (+)
G74770 NA non-coding upstream 359385 18957638 ~ 18970866 (+)
LOC111193102 NA non-coding upstream 626364 18702721 ~ 18703887 (+)
G74951 fnbp4,LOC107598873,LOC107681673 non-coding downstream 143661 19477998 ~ 19481987 (+)
G74958 kiaa1033 non-coding downstream 172781 19507118 ~ 19510980 (+)
G74970 NA non-coding downstream 193323 19527660 ~ 19527911 (+)
G74982 NA non-coding downstream 206583 19540920 ~ 19543821 (+)
G74992 NA non-coding downstream 259228 19593565 ~ 19595241 (+)
cadps2 NA other upstream 7476 19140149 ~ 19322775 (+)
G74832 NA other upstream 244695 19082816 ~ 19085556 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other upstream 850906 18470704 ~ 18479345 (+)
G74649 NA other upstream 875054 18454851 ~ 18455197 (+)
G74169 NA other upstream 3041922 16286676 ~ 16288329 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other downstream 125621 19459958 ~ 19462187 (+)
LOC103044129 NA other downstream 192875 19527212 ~ 19537617 (+)
LOC103028745 NA other downstream 869282 20203619 ~ 20207955 (+)
G75383 morc2,LOC107754332,LOC107701074,LOC107674835 other downstream 1688919 21023256 ~ 21025128 (+)
G75391 pus7 other downstream 1754285 21088622 ~ 21096906 (+)

Expression


Co-expression Network