washc4 (kiaa1033,si:dkey-23p11.2,LOC107678984,LOC107696292)


Basic Information

Item Value
gene id washc4
gene name kiaa1033,si:dkey-23p11.2,LOC107678984,LOC107696292
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19505050 ~ 19525749 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672264.1
TATTTTTGGCTAGTTTAAGATTCTGAAGGGCAGGTTTTAGACTAACTTTGGactggatattttttttgtggacctggcaaccctgctgcCCTGCTACTTTCTCTACTATCACTCTGCGGAGGGAGGGCAGCTGTCTGCTGGAGAACGTCTCTGCGCTAGCTCTCTCTTCACAGGATGGCGGTGGAGTCGATCTCAGCAGACTGGGAGTTTGATCGCTTTGACGATGGCTCTCAGAAAATTCATACTGAAGTGCAGCTAAAAAACTACACAAAGTTCTTGGAAGAGTATTCATCTCAACTCAAAGCTATTGAAGAAGCCCTGGATGACTCCATTGGTGATGTCTGGGATTTCACTCTGGATCCAATAGCTTTGCAGCTCATTCCCTATGAACAGTCCTCACTTTTGGAGTTGATTAAGACAGAAAACAAGGTCCTTAATAAAGTCATTACAGTTTATGCAGCTCTCTGCAGTGAAGTCAAGAAATTGAAATATGAGGCTGAAACAAAGTTCTATAATGGTTTGCTGTACTACGGTGAAGGAGTGTCAGACACCAGTGTGGTGGAGGGCGAATGCCAAGTTCAAATGGGACGCTTCATCTCCTTTCTGCagGAGCTGTCTTGCTTTGTGTCTCGTTGCTTTGAGGTTGTGGTGAACATTGTGCATCAACTAGCTGCTTTGTACAACAGCAACAAAGCTGCCACAAAAATCATTGAGTCATCTGGAGTTCATTTTCAGACAGTATATGAGCACCTGGGTGAACTGCTGGTGGTTCTTATCACTTTGGATGAGATCATGGAGAACCATGCTACTCTGAGAGATCACTGGAAGATGTACAAAAGATTACTCAAATCTGTCCACCACAACCCATCCAAGTTTGCTATTCTGGAAGAGAAGTTAAAACCATTTGAGAAGCTTTTGCTAAAGCTGGAGGGACAGCTGCTGGACAGCATGATCTTTCAGGCTTGTGTAGATCAGAGGTTTGATAATCCTGGGGAGGGGGTATCCGTCTCTAAAAACAGTGCCTTTGCTGAGGAGTTTGCCCACAACATTCGCACAATCTTCGCCAATGTGGAGTCAAAGCTTGGGGAACCTTCTGAGATTGACCAGAGGGATAAATATGCAGGGGTCTGTGGCCTCTTTGTCCTGCATTTCCACATCTTTCGAACTGTTGACAAGAAACTCTATAAATCTCTTTTGGATGTGTGCAAAAAGGTCCCTGCAGTGACACTCACTGCCAACATAATCTGGTTTCCTGACACTTTTTTGATTAACAAAGTCCCTGCCGCAGCCAAACTGATGGATAAAAAGAGTCTCCAGGCCATTCGCAGCAGCAGAGATGCATTCTTGCaacaaaaagcacaaacacTAACCAAggATGTGCAGTCTTATTATGtgtttgtgacctcctggatgatgAAGATGGAAGCTATCTTATCTAAGGAACAGAGGCCTGACAAACTCGCTGAAGATCTGAGCAACAGGTGCAATGTCTTTGTGCAGGGAATCCTGTATGCctacagcatcagcaccatcatTAAAACCACCATGAACCTGTACATGTCCATGCAGAAACCCATGACCAAGACCTCGGTGAAGGCTCTGTGTCGTTTGGTGGAGCTTCTGAAGGCTGTAGAGCACACATTTCACCGGCGCTCCCTAGTAGTGGCAGACTCTGTGACGCACATCACTCAGCAGCTACACTCCCAGGCCCTGACCTCCATTTCTACAGCTAAGAAAAGGGTGATCTCTGATAAGAAGTACAGTGAGCAGAGACTGGATGTGCTGTCAGCGCTGGTTCTGGCTGAGAACACTCTGAACGGGccgagcacgagagagagaaggCTGGTAGTGTCTCTAGCACTCAGTGTGGGCACTCAGATGAAAACCTTCAAGGATGAGGAGCTTTTACCTTTACAACTTGTCCTCAAGAAGCTGGATCTGATCAGTGAATTAAGAGAGAGGGTCAAAGTACAGTGTGACTGCAGCTTTCTCTACTGGCACCGTGCAGTCTTTCCCATTTACCTGGATGATGTGTATGAAAATGCTGTGGATGCAGCGAGGATTCATTACATGTTCAGTGCTCTTAGAGACAGTGTGCCGACCATGTTGCACGCCAAACATATGGAGTCCTGTGAGCAGCTGCTGGAGTGTTACGACAAAGAGATCATGGATGTCTTTAACGAGCACTTGTTGGACAAGCTGTGTAAGGAGATAGAGAAGGACCTGCGGCTCTCTGTGCACACACACCTCAAGCTGGACGACCGGAACCCGTTCAAAGTAGGCATGAAGGACCTGGCTCACTTCTTTTCCCTCAAGCCAATCCGCTTCTTCAATCGCTTCATTGATATCAAAGCCTATGTAACTCACTACCTGGACAAAACTTTTTACAACCTGACCACAGTGGCTCTCCATGACTGGGCCACATATAGTGAGATGAGAAATCTAGCCACACAGCGCTATGGTCTAGTCATGACTGAGGCCCATCTCCCCAGCCAGACTCTGGAACAGGGACTGGATGTGTTGGAGATTATGAGGAACATCCACGTGTTTGTCTCGCGTTATCTCTACAATCTGAACAACCAGATCTTCATTGAGAGGACCAGCAACAACAAGCACTTAAACACCATCAATATTCGGCACATCGCAAACTCAATCCGCACCCATGGAACTGGCATAATGAACACTACTGTAAACTTCACGTATCAGTTCCTCCAGAAGAAGTTTTACATCTTCAGTCAGTTCATGTACGACGAGCACATCAAGTCCAGGCTCATCAAAGATATCCGCTTCTTCAGAGAAACCAAAGATCAGTCTGATCAGAAGTACCCCTTTGAGAGGGCTGAAAAGTTCAACCGGGGCATCAGAAAACTTGGCATCACTCCAGATGGCCAGAGCTACCTGGACCAGTTCAGACAGCTCATCAGTCAGATTGGTAACGCAATGGGGTATGTACGAATGATCCGCTCTGGAGGCCTGCACTGTTGCAGTAGTGCTATCAGGTTTGTTCCTGATCTGGAGGACATTGTAAACTTTGAGGAGTTAGTAAAGGAGGAGAGTCTATCTGATGAGACGCAGAAGGCAGCCAGCGTCTTGGATTCTGTCCTTAGTGACCTGACCACTAACTCAGCCGAGGGAACTGAGTATTTCAAAATGCTTGTGGGTGTGTTTGCCCCAGAGTTCCGCAGCCTGAAAAATATGCACTTAAGGAACTTCTACATGATCGTTCCCCCTTTGACAGTCAATTTTGTGGAGCACTCTATAGGCTGCAAAGAGAAGCtgaataaaaagaacaaaaacggAGCAGCCTTCACAGATGATGGCTTTGCCATGGGTGTTGCCTACATTCTGAAGCTGCTGGATCAGTATCAAGAGTTTGACTCCCTGCACTGGTTCCAGGCAGTCCGAGAGAAATACATGAAGGAAATGAGCGCAGTGGTGAAAGAGCAGAATGTTCAGGCCACCAGCCAAGATGAGAAGCTCATGCAGACCATGAACTTAACTCAGAAGAGACTGGATGTCTATCTGCAGGAGTTCGAGCTGCTGTACTTTTCTCTGAGCAGTGCACGGATCTTCTTCAGAGCTGATAAGACTGCAGCAGAGGAAACCCAGGAAAAGAAAGACCGGGAGGATGTTGCTAAAGCAGCGGCGGTTTCTTCTGAAACTGAATCCAGCAGCAAGTAAAA

Function

NR:

description
WASH complex subunit 4 isoform X1

GO: NA

KEGG:

id description
K18465 MRT43, SWIP; WASH complex subunit 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672264.1 True 3683 mRNA 0.47 33 19505050 19525749

Neighbor

gene id symbol gene type direction distance location
lrrc10 lrrc10 coding downstream 16414 19487123 ~ 19488636 (-)
fnbp4 fnbp4,LOC107681673,LOC107753624,LOC107678983 coding downstream 19903 19475550 ~ 19485147 (-)
LOC103041446 LOC108436924 coding downstream 32008 19462357 ~ 19473042 (-)
ptprz1 ptprz1 coding downstream 67436 19364598 ~ 19437614 (-)
asb15 asb15 coding downstream 409261 19086893 ~ 19095789 (-)
etfbkmt etfbkmt coding upstream 43581 19569330 ~ 19572536 (-)
LOC103045635 arid3b,LOC108436938,LOC108275332,LOC107575848,LOC107752332 coding upstream 71181 19596930 ~ 19622548 (-)
LOC103046663 cox5aa,LOC103046663,LOC108436939,LOC107696286,LOC107716663,LOC107576348,LOC107678975 coding upstream 98938 19624687 ~ 19632439 (-)
LOC103046970 NA coding upstream 109376 19635125 ~ 19637652 (-)
LOC103047267 parp6,parp6b,LOC108436940,LOC108275327,LOC107753615,LOC107661437 coding upstream 117576 19643325 ~ 19660262 (-)
G74928 NA non-coding downstream 86246 19325392 ~ 19418804 (-)
G74911 aass,LOC102787118 non-coding downstream 149999 19354093 ~ 19355051 (-)
G74909 aass,LOC107753626,LOC107678990,LOC107752301,LOC107698474 non-coding downstream 155039 19344945 ~ 19350011 (-)
G74910 NA non-coding downstream 163114 19279652 ~ 19341936 (-)
G74915 NA non-coding downstream 214763 19287340 ~ 19290287 (-)
G75069 NA non-coding upstream 115072 19640821 ~ 19688118 (-)
G75081 NA non-coding upstream 219815 19745564 ~ 19746445 (-)
G75092 NA non-coding upstream 273636 19799385 ~ 19799625 (-)
G75093 NA non-coding upstream 279017 19804766 ~ 19804970 (-)
G75106 NA non-coding upstream 345393 19871142 ~ 19872681 (-)
G74838 wasl,LOC105896696,LOC108275301 other downstream 432162 19070938 ~ 19072888 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other downstream 496684 18992668 ~ 19008366 (-)
G74791 NA other downstream 564586 18939174 ~ 18940464 (-)
G74591 isl2,LOC105022634 other downstream 1475303 17982747 ~ 18029747 (-)
nrg4 NA other downstream 1619655 17877026 ~ 17885395 (-)
G75100 LOC108436948,LOC108275266 other upstream 333945 19859694 ~ 19865982 (-)
G75207 api5,LOC107696269,LOC107753602 other upstream 501413 20027162 ~ 20032027 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other upstream 558679 20084428 ~ 20100250 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other upstream 1096892 20622641 ~ 20748208 (-)
gatd1 pddc1,LOC102788149 other upstream 1539570 21065319 ~ 21071246 (-)

Expression


Co-expression Network