LOC103046970


Basic Information

Item Value
gene id LOC103046970
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19635125 ~ 19637652 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672279.1
gtgtgtgtgtgtgtgcgcgtgttgGATGCATACAGGCTGTGgattttgtgaagcagaactggAGAACTGTGTGCCCTTCTACTCTCTGATTGAAATCATCGCCTCAAGGATCAAACTGCTATGAGGCCATACGGCTTCAACAGTAGGAGAGGAAGATGCGAAAATAGCAATGGCAGATGAGAAGACaaatttgttagttttttttttttttacgatttcCCAATTTCACATACAAAATGACGAGCTAAATTTCTTTATTCTGTGCAGAAATGTGCATATAGACTTTTTGGCAGACAGATGTTTCACATTTGAACATTGTTTACTGGCTGTGTTGTATCTTCACGCTTGGCTGCATCTCTATTTGAACTCTCTTAATCAGTCACGCATGTTAATCatttacacacacgcacagattGACAGCAGCTCATCAGCATGGCCCATTTAAAGGGGAATGAAACGAGGCTTCCTGTAGAATGTGATGTCATTTAACAAGGGAAATAGATGGGTTCAGTGGTAGGAAAGAGGTTTGAGTGCCTGTCACTTTAAGAGGTCCCCAATGCcttggtttctctctctctctctctctctctctctctttctctctgtctctccctctgatCCCCCCTCCTGCCCCATGTCCCTCACAGCCACTCACATGCTTTTTTAATACATGTTGGTGAACTGTATTAATTCTTCTATGTGTCACGCCTGAGAGAGGACACCTTGACCGTGTGGACAGTTATTGAAGACTGGGATCCAGTCAGACTGGCTACAGTTTTACAGTCTGGAAAAAACTTTCTCGCTAAACTATTTATCTGATGTCCACAGACAGCACAGATGTAAGAAATGGATTGCTCTGCTTCTTCAAAGCCTAGTCATCTACACTCTTAAAGAACTGAAGAACTGGTTGCTCAGAAATGGCTTTTGAAGAAAGATTTGAGGAATTACTtccccatccctcacacaaaaaGAGAATCTGAGGATGTCAGGTATGTCCTTCTCTAGCAGAGAGCCTTCCACATGTTCCACATCTGTTCCTAAAACCCACCATTCTGTTACAACCATGGATGGAAGTTTAAACACCTGCTCTGCCAAGCCAGCACCAGCAGGATTCAGAAGAGTATCATCTACCGGAGAGCCAAGCTCATGTCCGGTCCCAGGATTAGGACCTGGAGTCCTAGAGATGCGTGTTAAGGAGGGAAGTAAAATCCGAAACCTGTTAGGCTTTGCCATGTCCCGTCTGCAGGGAGGAGGACACGTGTCTCCAGTCAGTCAGGTTATGTTCACTGGAACAGGTCGCGCCATCACTAAAACCATTACCTGTGCTGAGATAATGAAACGTCATATCCGAGGCTTACATCAAGTGTCCAAGCTTCAGTACAGGACGGTGAGAGAAGTGTGGCAGAGCAGGGAGGATGAAAGCATtcagatgactgtggttaaaaaaGTCCCAGCCATTTACATTTTCCTTTCCAAAGAACCGCTGGATCCACTGGAGTTAGGATACCAGTCACCTGCTGAGATGAGCTCAAGCTCAGAGGAAAACACAAGTGGAGCTGCTACAGAGTCTTCTAGAAAGAGACACTGCAGTCCATGCTCTTATGAAACTGTCCAACTGTCCAAAATTAAAAGAAGTACACAGGAGCACACTGCTACAGCATATAATTACTAGGCATATAATTTCATGGGAATTAATTGTATCTTTTATCAACTGATACATTCACTTTTTTATGCATTTGAATCTATATTTATCCATTTTCATGTGTATTCATAGtttgcacattttaaataacattgttataatgcattaattataattatgagACACAAAGAATCCGTAATGTGCTATTTCCTTTCTCCAAAATCCTTTTTCCACTGAAGTGTAATACTGCCATCTGCTGGCTGTATAGCAAACTGATTATTTGCCTTCTCTAATTTCTGAGGCCACTTTgcatgcaatgtaatgtaatgtggaTTTACTATTCCAGTACAAGTCCAGGTTTATGGAGCCTATGTTaaggtaaaaaatattaaacaatgtcCTCTGCTTAAAATCTGCCTAGGATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672279.1 True 2067 mRNA 0.42 2 19635125 19637652

Neighbor

gene id symbol gene type direction distance location
LOC103046663 cox5aa,LOC103046663,LOC108436939,LOC107696286,LOC107716663,LOC107576348,LOC107678975 coding downstream 2686 19624687 ~ 19632439 (-)
LOC103045635 arid3b,LOC108436938,LOC108275332,LOC107575848,LOC107752332 coding downstream 12577 19596930 ~ 19622548 (-)
etfbkmt etfbkmt coding downstream 62589 19569330 ~ 19572536 (-)
washc4 kiaa1033,si:dkey-23p11.2,LOC107678984,LOC107696292 coding downstream 109376 19505050 ~ 19525749 (-)
lrrc10 lrrc10 coding downstream 146489 19487123 ~ 19488636 (-)
LOC103047267 parp6,parp6b,LOC108436940,LOC108275327,LOC107753615,LOC107661437 coding upstream 5673 19643325 ~ 19660262 (-)
LOC103030119 hcn4,LOC108436942,LOC107696280,LOC107573709,LOC106530001 coding upstream 54532 19692184 ~ 19725549 (-)
LOC103021510 LOC108436943 coding upstream 92511 19730163 ~ 19749501 (-)
LOC103030439 ube2q2,LOC108436947,LOC107696278,LOC105015542,LOC107661444 coding upstream 125143 19762795 ~ 19772325 (-)
LOC103024527 fam19a5b,LOC103024527,LOC108428378,LOC107696241,LOC107753604,LOC107598818,LOC108274593 coding upstream 301983 19939635 ~ 19972658 (-)
G74928 NA non-coding downstream 216321 19325392 ~ 19418804 (-)
G74911 aass,LOC102787118 non-coding downstream 280074 19354093 ~ 19355051 (-)
G74909 aass,LOC107753626,LOC107678990,LOC107752301,LOC107698474 non-coding downstream 285114 19344945 ~ 19350011 (-)
G74910 NA non-coding downstream 293189 19279652 ~ 19341936 (-)
G74915 NA non-coding downstream 344838 19287340 ~ 19290287 (-)
G75069 NA non-coding upstream 3169 19640821 ~ 19688118 (-)
G75081 NA non-coding upstream 107912 19745564 ~ 19746445 (-)
G75092 NA non-coding upstream 161733 19799385 ~ 19799625 (-)
G75093 NA non-coding upstream 167114 19804766 ~ 19804970 (-)
G75106 NA non-coding upstream 233490 19871142 ~ 19872681 (-)
G74838 wasl,LOC105896696,LOC108275301 other downstream 562237 19070938 ~ 19072888 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other downstream 626759 18992668 ~ 19008366 (-)
G74791 NA other downstream 694661 18939174 ~ 18940464 (-)
G74591 isl2,LOC105022634 other downstream 1605378 17982747 ~ 18029747 (-)
nrg4 NA other downstream 1749730 17877026 ~ 17885395 (-)
G75100 LOC108436948,LOC108275266 other upstream 222042 19859694 ~ 19865982 (-)
G75207 api5,LOC107696269,LOC107753602 other upstream 389510 20027162 ~ 20032027 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other upstream 446776 20084428 ~ 20100250 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other upstream 984989 20622641 ~ 20748208 (-)
gatd1 pddc1,LOC102788149 other upstream 1427667 21065319 ~ 21071246 (-)

Expression


Co-expression Network