LOC103029688 (si:ch1073-174d20.1,dbndd1,LOC108428370,LOC108275320,LOC107723994,LOC107742629,LOC107559144,LOC107570651)


Basic Information

Item Value
gene id LOC103029688
gene name si:ch1073-174d20.1,dbndd1,LOC108428370,LOC108275320,LOC107723994,LOC107742629,LOC107559144,LOC107570651
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20243366 ~ 20253823 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672307.1
CCGCGGTAACACAGTAATCCAGCTCCAGCATGTGCAAGCTGTGATTCAGAATCATGTTTTATAATCTCTGTTTTTATGTGGGAACTCCATAAGATCTCCCTCAGATGTGAAAGGCTTACACTAAGAACTGAAATCAGAGCAACAAAGCTGTCCTTCATAACCCAGCAGTCTGCAGGCCTGTGTCAAGATCTGCTGCTCTCACAGCTGTCCAGGCAGAACTCCCAGTcgtgttttttctttgctgttCTTGAATGACTGCACTAAAGGGAATTATCCTAAGTTATACAAAGGACTGGAGTACATTGGCTGCTGAAAGGGTCAATAAGAAGAGTCTGCTGCCCAGTCCGCCCAGCCCCATCTCATCAAACAGCTGCACCTCCTTCCAGTTATCCCAAAATCTATATGTGCAGCCTACTAGTGGTCCCATCCTTACAGTTTCCTTTTGTTAGCTTTGTGCACAGTGTCTTATGTATAATATAGGTGACTGCATGTTCAcgctttgtttttctttgttttgtctgCATGTGTCATTGTGCTGTGTGTGCTGCAATGACAAGGGAGGTGTGGAAGCGTGACTGTGCGTACAAAGGAAAGaaatggggagagagagagagaaagagagagagaaagagagagagagtgacggAGCAGGCTACGCCTCCTCCCTttaccccccctccctccctccatccctggCTGCAGCGCCAGACAGCATTGCACCGGCtgctgctgtaggctgaatggagGCTCAGGCAGACTCCAGTGCTGCAGAGCCAAATAGGGAGAGAGACCTTCATAAACTTCTCAAGTCCTCCAGCTCTGCCAGTCTCACTACTGAGGCATCCCACAATGCTTCAGGAGAGCACGTTGGAACCCCTGGGCACCACTGCAGCCAGGTGCTGACAGCAGAGAGACGCCAGCCCCTGAGCAGTGTGTCCTCCCTGGAGGTACACTTTGATCTCCTTGACCTGACAGAGCTCACAGACATGTCTGATCAGGAACTGGGAGAAGTGTTTGCTGATTCAGATGAAGAGAACCACAGTGAATCCCCAGCAAATCATCATCAGCCTCCATTACCACGATTTCCTCACAGTGGTTACGTCCGATCGCCTTCCTGGACGCGAGGTGGCAAAGGAGAGCAGCAGTCACGAGACAGGAAACATCACAGCGACTCAGAGAATACAGAGCCTTTGCTGAAGATAGAGCGCTCCCAATCCCAGCAGCCCTGAGCCATAAGCAGCTCAATGGGCTCAGACAGGACAGAAGCTCTTGTCTGGGGGATGCAGGTTCCTTCCCAAGGAAGAGACAGGGGATCTCTGAAGGACACGGAGAACCCTACTGAAGATAAAGTGATTTTCTTGCCTTACTGGGGCAAACAGAGACCCTCATATGGTCGAAAGAAAAGTGAGCTCTACTAAAGATGCAAAATCCCTCCTCTAACCAGCAACCAATTGGAGGTGAATCAGCGATGCAGTTCATATGGTCTTATCAGCATTACTTTGTGAAGAACTCCAAGCATGATCTCATGAAGAAGCATTGTGGCCCATTCAGGGTCTTTACTGATTCTGGGTAGGAGGAGACGTCATGGCCTGATGCAAAGCCTCAAAAAACACCACAGTCTGTTTTAACAAGATAGGGATTTTATTCAACAGCCTGTGGGTAGCATATATGAGCACACAGCACTGGACAGCAACAGTGTAGCAGtggaattaaaattaaacctaCGTGAATTAATTCCAAACTGAAGTGTGTTCCACAAAAGTAGAACGTGAGCTGCCTACAGACACTGTAGGTCAAAATTTGGAGTGAGCTGAAAAAAAGTCTTCATTAGCAATATGACCTGGTGAAgtaagtattaaaaataattattttgcttattttccaTCCAAGTATTTCTCGAAAGCCCTCTGGGTATGTGATTGATTTTCTGAAGAATTTAAACCAGAAAAAGTGAGAAACTACATGCCATTCATTTGTGTGAGAACCTTTAACTTGAGTATTTATACAACTGTATGGTAATATTGACACAGTTACAGGTTATAACAGGGTTTAATTATGTTTAGCATGTTTAAAACAGGGTATGACACACGAAACAAGAAGAAACTCAAAGTCAGAATCaaatcaacataaaaaaaaacaatgacaagGAAATAAAGAACCTAAAAAATG
>XM_022672308.1
CCGCGGTAACACAGTAATCCAGCTCCAGCATGTGCAAGCTGTGATTCAGAATCATGTTTTATAATCTCTGTTTTTATGTGGGAACTCCATAAGATCTCCCTCAGATGTGAAAGGCTTACACTAAGAACTGAAATCAGAGCAACAAAGCTGTCCTTCATAACCCAGCAGTCTGCAGGCCTGTGTCAAGATCTGCTGCTCTCACAGCTGTCCAGGCAGAACTCCCAGTcgtgttttttctttgctgttCTTGAATGACTGCACTAAAGGGAATTATCCTAAGTTATACAAAGGACTGGAGTACATTGGCTGCTGAAAGGGTCAATAAGAAGAGTCTGCTGCCCAGTCCGCCCAGCCCCATCTCATCAAACAGCTGCACCTCCTTCCAGGAGGTGTGGAAGCGTGACTGTGCGTACAAAGGAAAGaaatggggagagagagagagaaagagagagagaaagagagagagagtgacggAGCAGGCTACGCCTCCTCCCTttaccccccctccctccctccatccctggCTGCAGCGCCAGACAGCATTGCACCGGCtgctgctgtaggctgaatggagGCTCAGGCAGACTCCAGTGCTGCAGAGCCAAATAGGGAGAGAGACCTTCATAAACTTCTCAAGTCCTCCAGCTCTGCCAGTCTCACTACTGAGGCATCCCACAATGCTTCAGGAGAGCACGTTGGAACCCCTGGGCACCACTGCAGCCAGGTGCTGACAGCAGAGAGACGCCAGCCCCTGAGCAGTGTGTCCTCCCTGGAGGTACACTTTGATCTCCTTGACCTGACAGAGCTCACAGACATGTCTGATCAGGAACTGGGAGAAGTGTTTGCTGATTCAGATGAAGAGAACCACAGTGAATCCCCAGCAAATCATCATCAGCCTCCATTACCACGATTTCCTCACAGTGGTTACGTCCGATCGCCTTCCTGGACGCGAGGTGGCAAAGGAGAGCAGCAGTCACGAGACAGGAAACATCACAGCGACTCAGAGAATACAGAGCCTTTGCTGAAGATAGAGCGCTCCCAATCCCAGCAGCCCTGAGCCATAAGCAGCTCAATGGGCTCAGACAGGACAGAAGCTCTTGTCTGGGGGATGCAGGTTCCTTCCCAAGGAAGAGACAGGGGATCTCTGAAGGACACGGAGAACCCTACTGAAGATAAAGTGATTTTCTTGCCTTACTGGGGCAAACAGAGACCCTCATATGGTCGAAAGAAAAGTGAGCTCTACTAAAGATGCAAAATCCCTCCTCTAACCAGCAACCAATTGGAGGTGAATCAGCGATGCAGTTCATATGGTCTTATCAGCATTACTTTGTGAAGAACTCCAAGCATGATCTCATGAAGAAGCATTGTGGCCCATTCAGGGTCTTTACTGATTCTGGGTAGGAGGAGACGTCATGGCCTGATGCAAAGCCTCAAAAAACACCACAGTCTGTTTTAACAAGATAGGGATTTTATTCAACAGCCTGTGGGTAGCATATATGAGCACACAGCACTGGACAGCAACAGTGTAGCAGtggaattaaaattaaacctaCGTGAATTAATTCCAAACTGAAGTGTGTTCCACAAAAGTAGAACGTGAGCTGCCTACAGACACTGTAGGTCAAAATTTGGAGTGAGCTGAAAAAAAGTCTTCATTAGCAATATGACCTGGTGAAgtaagtattaaaaataattattttgcttattttccaTCCAAGTATTTCTCGAAAGCCCTCTGGGTATGTGATTGATTTTCTGAAGAATTTAAACCAGAAAAAGTGAGAAACTACATGCCATTCATTTGTGTGAGAACCTTTAACTTGAGTATTTATACAACTGTATGGTAATATTGACACAGTTACAGGTTATAACAGGGTTTAATTATGTTTAGCATGTTTAAAACAGGGTATGACACACGAAACAAGAAGAAACTCAAAGTCAGAATCaaatcaacataaaaaaaaacaatgacaagGAAATAAAGAACCTAAAAAATG

Function

symbol description
dbndd1 Predicted to be involved in negative regulation of protein kinase activity. Predicted to be located in cytoplasm. Orthologous to human DBNDD1 (dysbindin domain containing 1).

NR:

description
PREDICTED: dysbindin domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672307.1 True 2169 mRNA 0.46 6 20243366 20253823
XM_022672308.1 False 1997 mRNA 0.46 7 20243366 20253823

Neighbor

gene id symbol gene type direction distance location
LOC103045029 LOC108428372 coding downstream 36668 20192525 ~ 20206698 (-)
alkbh3 alkbh3 coding downstream 162031 20073506 ~ 20081335 (-)
c8h11orf96 si:ch1073-281m9.1,cunh11orf96,LOC103025886,LOC107696240,LOC107661503,LOC107575890,LOC107580776 coding downstream 181291 20060386 ~ 20062075 (-)
ticrr NA coding downstream 192081 20037455 ~ 20051285 (-)
LOC103024527 fam19a5b,LOC103024527,LOC108428378,LOC107696241,LOC107753604,LOC107598818,LOC108274593 coding downstream 270708 19939635 ~ 19972658 (-)
ankrd27 ankrd27 coding upstream 586681 20840504 ~ 20863315 (-)
LOC103032734 LOC108428429,LOC108275416,LOC107577622,LOC107566260,LOC107682256 coding upstream 615864 20869687 ~ 20877379 (-)
trnat-agu_2 NA coding upstream 642280 20896103 ~ 20896176 (-)
LOC103033388 LOC103033709,LOC108428427,LOC105941050,LOC101483816,LOC102290823 coding upstream 649255 20903078 ~ 20905520 (-)
LOC103033709 LOC103033709,LOC108428427,LOC105941050,LOC101483816 coding upstream 655056 20908879 ~ 20910858 (-)
G75232 LOC108428438,LOC108274991,LOC107559147 non-coding downstream 56879 20181150 ~ 20186487 (-)
G75224 rfwd3,LOC106584535 non-coding downstream 85162 20153547 ~ 20158204 (-)
G75223 NA non-coding downstream 91930 20148689 ~ 20151436 (-)
LOC107197502 NA non-coding downstream 113796 20101712 ~ 20129570 (-)
G75208 api5,LOC107753602,LOC107661449 non-coding downstream 208607 20032610 ~ 20034759 (-)
G75265 NA non-coding upstream 18952 20272775 ~ 20276444 (-)
G75243 LOC108428369,LOC107701578,LOC107742623,LOC107559153,LOC107723981,LOC107570647,LOC107688789 non-coding upstream 24653 20278476 ~ 20284642 (-)
G75270 NA non-coding upstream 48062 20301885 ~ 20302545 (-)
G75286 NA non-coding upstream 315024 20568847 ~ 20569357 (-)
G75295 NA non-coding upstream 540661 20794484 ~ 20794959 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other downstream 143116 20084428 ~ 20100250 (-)
G75207 api5,LOC107696269,LOC107753602 other downstream 211339 20027162 ~ 20032027 (-)
G75100 LOC108436948,LOC108275266 other downstream 377384 19859694 ~ 19865982 (-)
G74838 wasl,LOC105896696,LOC108275301 other downstream 1170478 19070938 ~ 19072888 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other downstream 1235000 18992668 ~ 19008366 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other upstream 368818 20622641 ~ 20748208 (-)
gatd1 pddc1,LOC102788149 other upstream 811496 21065319 ~ 21071246 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other upstream 1015681 21269504 ~ 21273017 (-)
LOC103024007 LOC108428399 other upstream 2188913 22442736 ~ 22574013 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other upstream 3070754 23324577 ~ 23366216 (-)

Expression


Co-expression Network