LOC103030013 (LOC108428369,LOC107701578,LOC107742623,LOC107559153,LOC107723981,LOC107570647,LOC107688789)


Basic Information

Item Value
gene id LOC103030013
gene name LOC108428369,LOC107701578,LOC107742623,LOC107559153,LOC107723981,LOC107570647,LOC107688789
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20278577 ~ 20284673 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672309.1
CTCGAGCCGGACGCGTTGCTGGGGGTCTCGGTGCTGTGGTCGggtagaggagaggagaggtgaAGCAGCAGGTCGCTGCCACTAAATCAGATTAATGGGCAAACTGGATTGTGACGTCAGGGTTTAAAACTGCGGGCAGCGGCGTCTCGCGCTGCTCGAGCTGAAGCGGCGCTGCGCGCGCAGGAAGAAGGCTCGAGCTCCTCTGACTGTCTCACTGACTCTGCACGGGCAAGCATGACTCCACCAACAACACCAACACCATAGAGCGGCTCCTCCAGAGACAAGCCTCCAGCCATGGCCTCCTATTTGGAGATACTTGATGATGACCAAGGTCATGAGCTGAGTCTTTTTTGTGTACCTAAACACTATGAAGAGGACTTGGACAGTGTTATAATTCCCAATGGTCTTATTAAAGATCGgaCAGAGCGGTTAGCCAGAGATATTGTTCGTGatatgggaggacaccacatcGTGGCGCTGTGTGTGCTGAAAGGAGGATATAAATTCTTTGCAGACCTGATGGATTACATTAAGGCATTGAATCAGAACAGCGATAAGTCTGTGCCGTTGACTGTGGATTTCATTAGGCTAAAGAGCTACTCAaacgATCAGTCAACAAACTGTGTGAAGGTTATTGGAGGAGATGAATTGTCTGCTCTTGCTGGAAAGAATGTGCTCATAGTTGAGGTGAGCTTTTAACGGTTTGAGTCtttaacaatttaaaattattctttGGACAATCACAGTAAGTACAAGGAAACAGATAATCAGATTTTTGACTCCAAAATATTACACTGAACTGGCAGAAGTCAAAGGACAGGATCTAGTATCATGTCCCTTGAAAGCTATGGAACATTGCACTGACCTGCGGGATATGCATGTGTGGATTTCTGCCAGAGAGGCTTCTCTGTTCTGGACAGAAACCACCGGTCCTCATCTTTACCACCCACTATTCAATCTACTCACAAATCGACAGCCCACTATTTATAAGTGTCCAGAGACATACTGGTATACTTTGACTTTTGGTATGTCTGTGTATTTTGACattgaaaatctgaaaatgtaaattaatagagaaattaaatgattcagtttgaATTAAGTTTCAGATGCTGCGGTTCAAATTCAAAACAATGGTTAAAATTCACATTTCATCAtatgttgtaaaatatttaacttaTGTATTTTCAAGCTTTAAAACCCAGCTTTACTACttaagctttttaaatgt

Function

NR:

description
PREDICTED: hypoxanthine-guanine phosphoribosyltransferase-like

GO:

id name namespace
GO:0021551 central nervous system morphogenesis biological_process
GO:0046100 hypoxanthine metabolic process biological_process
GO:0006166 purine ribonucleoside salvage biological_process
GO:0006168 adenine salvage biological_process
GO:0006178 guanine salvage biological_process
GO:0032263 GMP salvage biological_process
GO:0032264 IMP salvage biological_process
GO:0005829 cytosol cellular_component
GO:0004422 hypoxanthine phosphoribosyltransferase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672309.1 True 1231 mRNA 0.43 5 20278577 20284673

Neighbor

gene id symbol gene type direction distance location
LOC103030550 LOC108428435,LOC108274760 coding upstream 2022 20253846 ~ 20276555 (+)
tdrd12 NA coding upstream 48577 20209281 ~ 20230000 (+)
LOC103028218 LOC108428438,LOC108274991,LOC107559147 coding upstream 86960 20160901 ~ 20191617 (+)
rfwd3 rfwd3,LOC107754982,LOC107559137 coding upstream 118475 20148662 ~ 20160102 (+)
api5 api5,LOC107696269,LOC107753602,LOC107661449 coding upstream 243780 20027177 ~ 20034797 (+)
wwox wwox,LOC107559152 coding downstream 5157 20289830 ~ 20632543 (+)
faap24 faap24 coding downstream 592744 20877417 ~ 20880566 (+)
LOC103033048 slc7a10b,slc7a10,LOC108428368,LOC108274532,LOC107679961,LOC107752484,LOC105900738,LOC107555706 coding downstream 597157 20881830 ~ 20895098 (+)
ccdc34 NA coding downstream 628108 20912781 ~ 20915900 (+)
LOC103034349 LOC108428426,LOC108274949 coding downstream 632833 20917506 ~ 20923676 (+)
G75131 NA non-coding upstream 155837 20060370 ~ 20122740 (+)
G75034 NA non-coding upstream 473601 19804766 ~ 19804976 (+)
G75033 NA non-coding upstream 478928 19799385 ~ 19799649 (+)
G75026 NA non-coding upstream 512812 19761774 ~ 19765765 (+)
G75017 NA non-coding upstream 545539 19732016 ~ 19733038 (+)
LOC111193104 NA non-coding downstream 4 20284677 ~ 20288047 (+)
G75184 NA non-coding downstream 167514 20452187 ~ 20452452 (+)
G75192 NA non-coding downstream 291605 20576278 ~ 20577245 (+)
G75300 NA non-coding downstream 555860 20840533 ~ 20840981 (+)
G75309 LOC108428429,LOC108275416,LOC107566260,LOC107682256 non-coding downstream 585037 20869710 ~ 20873881 (+)
LOC103028745 NA other upstream 70622 20203619 ~ 20207955 (+)
LOC103044129 NA other upstream 740960 19527212 ~ 19537617 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other upstream 816390 19459958 ~ 19462187 (+)
cadps2 NA other upstream 955802 19140149 ~ 19322775 (+)
G74832 NA other upstream 1193021 19082816 ~ 19085556 (+)
G75383 morc2,LOC107754332,LOC107701074,LOC107674835 other downstream 738583 21023256 ~ 21025128 (+)
G75391 pus7 other downstream 803949 21088622 ~ 21096906 (+)
mov10l1 NA other downstream 965794 21250467 ~ 21264776 (+)
LOC103028957 rfx7,LOC108428391,LOC108275305,LOC107695007,LOC107563886,LOC100538179,LOC107741823,LOC100694937 other downstream 2470300 22754973 ~ 22780959 (+)
LOC103047784 LOC108428360,LOC108274708 other downstream 2497062 22781735 ~ 22815522 (+)

Expression


Co-expression Network