ankrd27 (ankrd27)


Basic Information

Item Value
gene id ankrd27
gene name ankrd27
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20840504 ~ 20863315 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672310.1
AGCAGTCGGGGAAGTGCACTACGGAGCGGGGCTATGATGTTCAGGCGGACTCGGTTATTGTGGCTGTACTcgaataaatgttaaatttctCGGATATATTTGGTGGGCAAAAACCAGGTGTCCGAGTGGCGGGTCCATATGGCTGTGTATGATGAGAACATTCTGAAGAATCCCTTTTACCTGGCACTGGAGAAGCAAAGACCAGACCTGTGCAGCCGAGTGGCAGAAGTGCATGGCATTGTCTTGGTTCCATGTCGTGGAAGTTTATCGGGTGGTTCATACACAGCAGCACAATTTGAGAACAATGTACTCCTGCCTGCAGAACAGGGATATCAGACAGTTGATGGGAAGGAGGTTTCCATAGAGAATAACCAAGTGAATTTGGGATCAGGGTTTCTGAACTCTGCCTCTGTTCCCATTCTGTTTGAGGAAACTTTCTACAATGAGAAAGAACAGGCCTACAGTATCCTGTGCATCAGTCGACCCATTGACTGTGAGCCAAGCCCAGTGGAGGTGAGTCCTGTCCCTGGACTGTACTGCTTGAAGAATGTGGAGGAGGTGAAGGAATTCCTGGGCCGCCATGCCGAGAAACTGGATAAGTTCATTGCTGCGTTTTGTAGCTCCTTCAAAGAGCTGGATAGAAAGGGCCTCCGCCATCACATAGATGCCGTACATAGTCTGTACATAAAGTGTCTTCAGTGCTTGCTGAGGGATTCTCGTCTGAAGGTGCTGACCAAACAGGAGCTTCAGATGGCACTTCTTAAACAAGCAGTGGAGATGTACATACATCATGGTATCCATGATTTTCTCTTTAGTTATGTTGGAACTCTTGAAGCAAgccagGATGCTGCATTCAATAAAACAGCAAGAGGACTGCAGGATCTGCAGCAGAAAGATATTGGTGTTAAGTCAGAATTCAGTATAAATATTCCACGTGCGAAGAGGGAATTGAATCAGCTCAACCGTTGCACTTCTCCTCAGCAGAAGCTGCTTTGCCTCAGGAAGGTCGCCCTCACTATTATGCAGTCGCCCAGTCGCACAGtTAATTTGGAGGCAATATGTGCAGATGATCTCCTTTCAGTTATTCTTTATCTGCTGGTAAAAACAGAGATTCCAAATTGGATGGCAAATCTTAGCTACATAAAGAACTTCCATTTCTGCAACTCTGTCAAGGATGACCTGAGTTACTGCCTGACCTCGTTTGAGGCAGCTGTGGAGTACATCAGCCAAGGCAACCTTAGTCAAGATCCCACGGGATCAGGGGAGCTGAATGACAAGCTTTTCTTCAGACAGAAGATGAATCTTCTTTCTCAGAGTTCCTCTACACCTATAGACTGCTTGTTTGAGcacaTAGCAAATGGCAACGAGGTGGAGGTGCAACGCTTGCTTAGTGAAGGCGAGAGTGAGGAAGACAGGAGGCAAATGTGTCACCCGCTCTGTTCCTGTGATGCATGTGATCTGCGGGTGTCGGGgAGATTAAATGACCCCTATATAGTCACTCCATATTCCCGGGATGACCGTGGCTACACTcctcttcatgttgctgctataTGTGgtCAGTCTCTTTTGATTGACCTGTTGGTGTCAAAGGGAGCTCCGGTAAACGCCACAGACTACCACAGTCTCACACCTCTGCATCTTTCCTGCCAGAAGGGGTACCAGGacctgcagctgctgctgttgcactataaggcaaacACAGATGCTCAGGACAATAATGGAAACACTCCTTTGCACCTGGCCTGCATGTATGGCCATGAGGATtgtgtaaaggCTCTGGTTTACTATGACATGCACACATGCCAGCTGAATGTACAGAATGATAAAGGCGACACAGCACTACACATTGCAGCACGGTGGGGCTACGAGGGCATCATAGAGGTGCTATTAGAAAACGGTGCCTCCACTCTTAATCACAACAAGGCAAACCAGACACCACTGCACTGCGCACTCAACTCCAAGATTCTGTCTGTTCTGGAGCGTACACGCAATGGCGCTAGTAAAAAGGAGAGTGCGTTTGAgTCTCCTAGCCATTCCCCGCAGCCCTCTGACTGCAGCAGTCGGCGCTCCTCTATATCCAGTACCTGCTCTCTGCTCTCTTTGGACACACGGCCAGAAGGTGACAATGTTCGTCACAAAGAGGTGGAGAAGCTGCTGCGGGCAGTGGCAGATGGAGATGTTGAAATGGTGCGTTACCTGCTGGAGTGGCTAGACGAGGAGCCAGAGGAAGATGAAAAAGCCGAGATGCCAGATAAAACAGAATTGTGCCACCCCCTGTGTCAGTGTCCAAACTGTGAGCCTACTCAAAAGaaGTTATCTACCCTGCAGTCAGATGGGCTGGGTGTGAACAGTAGCAGTGTGGATGGGTTCACTCCCCTGCATGTGGCAGCGCTGCATGGACACACAGCACTGGTCTCTTTGCTCATCCGCCATGGAGCCAACATCAACTCCCGTAATGGCCAGAGTGCCACGCCCCTCCACTTGGCCTGCCAGAACAGCCACATACAGGTTGTGACCTCACTTGTGGAATGCAATGCCAAGTTGAATAAAAGGGATCAGTTTGGGAACACTCCTCTGATTCAAGCCTGTCTAAAGGGACATGAGCAGACAGTGGAAGTCCTACTTGAGAGTGGTGCCTCAGTGAATCTGGCTAATAACCAGGGTAATACAGCCATACATGAAGCAGTTAGGGGAGGACACCAGGCTCTAGTAGAGCTCCTACTGCAAGCTGGTGCTCTCACACACCTCAGAAACAAGAGACAGAGGACGCCCCTCGACTGTGCACAAGAGACGGCTAGCAAgAACACATTAATCCTGAAGATTCTACAGAAAGCATGTGACCCCCATCCTGACGCTAATCCTGTTAGACAGTCCTGCATGCCCCAAGAAGCTCTGGGCAGAACGCCTTCTCTTGTCCAGAGGATGAAACAACACAAGGGCCCTGACCaggggagaagagagagagacgagttATCACACAGAATACAGCAGATGAAGAAGTCTGTTCACCAGGATGGAACCATTACCTACACAGAATCTCCAAGACtgGGTGGCAGGAGTGGTAAGAGGCGACTCCAGAGGGGAGAGACTGTGGATGGCTCCGGTCCATTCACTCATCCTGCTGAACACTCCGCATCATCTCAGCAGGGCCCCCAGAACCAGACCAAAAGCCTGACCCGCTGCCACACTATCCATCAGGACCTGGCTCACAGCACTCCACTGGTTCTGGAGCAAACAGACTGCAGCTCCTCTATGGACAAGATGGCTGAAAGTGGTGTTAATGGTCCTCAAGACCCCTCCTCTGCCCTCAGTGACCTCTCTCCCAACTGCACACCTGAACCTGAGCAGGTTAACGGGGAGTCTGTGGAGATTGGGCAGGCCTGCATGGAGGAAGACGAGGAAATGCAGCACATGAGGAAGAACTCTGATACTGCTTTCACAGAGATGGATAATGTTGTGCTCTGAGGATCCTCTGAGGCCTCTCTCCTGAATGTCCACCTGATGCAAGGTGAAGATCACTAGAAACTTTTGTGTTCAGCCGTGCTTTTGAACATCTTGCTCAGCTAGTTTAATGGGCTTGCTTAAGTCAGTGTTACTAAACTCATCCCAACAGCTTCTCACTGACTGGAACAGTTCATTTAGTTCAGAACAGCTTTTTTAAATGCTAAGCTTGTGATTTAAGGCCACTCAGTTCAGTTGCTTAATTGAACTTGTGTGAAATAAACTCAGAATGGTCTGCTGGCTGTTAAGTTGAGGGGATGTGAGAATAGACATAGGAACACTTGACGCCTGGCTTGTTTTTCTGTCATATAAAGGGAAATTGAAAGGCTTCTTGCTATTGTGACTTCTTTAGCTAACTCAGATTGAATAGGGATTACCTGTCAATCAGGAATCAAAAGTCCAAAAGTGTAGCATGTGATGAAAGATGCTGTAGAATGCCTGCACATCTCAGTTGTACTGAAAGAACTTTTCAGATTGAGTTTAGCCTGCAATTTCATTTTACCAGCACTTTTATCTTCTGCTTGTTCAAGCGTATCAAAGCAGCATAAAAAGGGATGGTTAGGCATAagctttactgtgttttttgtttgattgttttttttcccattttatttTGGTGTCAAATCTAATATGCTTAAGTTTGGGTGGCTTAGGCAACACTTACAGAAGCTTGAAACTGACTTGATTGAGTGAGCAACTGTGTGATCGAGTTGACAGTAATTCACAGTAATGTGTTATTGATTTTTCCACAGgttttaatttcagatatttttttattgttatatttaatttctaatttctttgtAAATGGGTATATTTCTCCTAGTTTAGCATAAGACATTTTAGTAATATTTTCCAAATTCTTATGTATTTTGAATGACTGTGTTCAAAAGGCAAAACAaatactaaatgtattttactggtCTAGATCCCACAGGCATCTTAATTCTAAATGAtctcaaatgttttttattagaaactattttaattaatttaatttggaaTGATCGGAAAATTTCAATCAAATGTAATGATTGAAAAGCCTGTTTACATGTCTAACTGTGCCAGATCCACACACGTGGGACTGAAAGCTACACAGTCACACAGAGGATGTATAAAGCAAGAGCAACCATTTACTTTTTCCTACAGAATCACCTGTTCCAGCTTTAAATGTGttcatgtatacatatatacagcattCTTGACCACTGTTGTATTTCGGATGCACTTTACTTCttctacaaaaataatatattcagcTAGTCTTAAAATGGGATTATTAGATAGTTGACCCATAGTGTGACATAGTGGTTTCAATTGACTTGTGTGGAAAACAGGtccctgtttaaaaaaagatccCATAACTTGTCAATAATTCATTTGTCACAGACAGtgatgcaacattttttttgttatagaaTTGATAAACAGTCttgaaagaaaatcataattatttttatatgtgtcagtttaaactttattttctgtAAGATGCAGTGACTGTGCcttatttgtgtaaaaataacCTATAATAAACCCATAATCCAATGGATGTTAATAATGAA

Function

symbol description
ankrd27 Predicted to enable SNARE binding activity and guanyl-nucleotide exchange factor activity. Predicted to be involved in early endosome to late endosome transport and neuron projection morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasmic vesicle; neuron projection; and plasma membrane. Human ortholog(s) of this gene implicated in eosinophilic esophagitis. Orthologous to human ANKRD27 (ankyrin repeat domain 27).

NR:

description
ankyrin repeat domain-containing protein 27-like isoform X1

GO: NA

KEGG:

id description
K20175 ANKRD27; ankyrin repeat domain-containing protein 27

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672310.1 True 5066 mRNA 0.45 29 20840504 20863315

Neighbor

gene id symbol gene type direction distance location
LOC103029688 si:ch1073-174d20.1,dbndd1,LOC108428370,LOC108275320,LOC107723994,LOC107742629,LOC107559144,LOC107570651 coding downstream 586681 20243366 ~ 20253823 (-)
LOC103045029 LOC108428372 coding downstream 633806 20192525 ~ 20206698 (-)
alkbh3 alkbh3 coding downstream 759169 20073506 ~ 20081335 (-)
c8h11orf96 si:ch1073-281m9.1,cunh11orf96,LOC103025886,LOC107696240,LOC107661503,LOC107575890,LOC107580776 coding downstream 778429 20060386 ~ 20062075 (-)
ticrr NA coding downstream 789219 20037455 ~ 20051285 (-)
LOC103032734 LOC108428429,LOC108275416,LOC107577622,LOC107566260,LOC107682256 coding upstream 6372 20869687 ~ 20877379 (-)
trnat-agu_2 NA coding upstream 32788 20896103 ~ 20896176 (-)
LOC103033388 LOC103033709,LOC108428427,LOC105941050,LOC101483816,LOC102290823 coding upstream 39763 20903078 ~ 20905520 (-)
LOC103033709 LOC103033709,LOC108428427,LOC105941050,LOC101483816 coding upstream 45564 20908879 ~ 20910858 (-)
LOC103034889 LOC108428424,LOC108274948 coding upstream 60423 20923738 ~ 20928274 (-)
G75295 NA non-coding downstream 45545 20794484 ~ 20794959 (-)
G75286 NA non-coding downstream 271147 20568847 ~ 20569357 (-)
G75270 NA non-coding downstream 537959 20301885 ~ 20302545 (-)
G75243 LOC108428369,LOC107701578,LOC107742623,LOC107559153,LOC107723981,LOC107570647,LOC107688789 non-coding downstream 555862 20278476 ~ 20284642 (-)
G75265 NA non-coding downstream 564060 20272775 ~ 20276444 (-)
G75357 LOC108428367 non-coding upstream 49516 20912831 ~ 20914086 (-)
G75366 NA non-coding upstream 116087 20979402 ~ 20985652 (-)
G75367 NA non-coding upstream 122879 20986194 ~ 20986762 (-)
G75419 NA non-coding upstream 178792 21042107 ~ 21066403 (-)
G75426 chid1,LOC107674841,LOC107655144 non-coding upstream 198143 21061458 ~ 21063620 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other downstream 92296 20622641 ~ 20748208 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other downstream 740254 20084428 ~ 20100250 (-)
G75207 api5,LOC107696269,LOC107753602 other downstream 808477 20027162 ~ 20032027 (-)
G75100 LOC108436948,LOC108275266 other downstream 974522 19859694 ~ 19865982 (-)
G74838 wasl,LOC105896696,LOC108275301 other downstream 1767616 19070938 ~ 19072888 (-)
gatd1 pddc1,LOC102788149 other upstream 202004 21065319 ~ 21071246 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other upstream 406189 21269504 ~ 21273017 (-)
LOC103024007 LOC108428399 other upstream 1579421 22442736 ~ 22574013 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other upstream 2461262 23324577 ~ 23366216 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other upstream 2963899 23827214 ~ 23833068 (-)

Expression


Co-expression Network