LOC103039177


Basic Information

Item Value
gene id LOC103039177
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 21043481 ~ 21047306 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672315.1
AACTAAAGTCCCTCTTCGCTCCCACCTGAGGAAGTCAAGTGTGTACTTACTATTGTTGTACTTAAAGAGTTAACATTGCTTTTAACGTCTAATCGGTAGTATCTGTGCAGTGTTGACTCTAAAACAATATAACGTATTGTTCACTCTGCTCAGGTTCATTGCCCAGTATTCCTCTGGGATAGCTAACTTAAGCAAATGAAAGGTGGTGCTTGTGTTGAGGGTTTTTGTAACACACCATGGCTCAGTGGCAGCCTGTAACAAATCTGAGGTTTAAACTTGTCCATCATCcgcctgttgttgttttttttctctgcctGCTGATCCTGGCTGGAGCCTTTATTGGAATTGGGATATACTCGAAACAACATGACATTAAGAACCCAGACATCAGCTTGGACTGGAATCAAATACTGGAATCATTTGCAAGCCTGAGGTACTGCACAGATGTAAACAATACAGACCTGTTGGGTGGGAAACAAGAGGATGAATCCCCTCTGCTATTAGATCATGGAGTTGGAACCTTCTCAAATGCTTCCCAAGACACTAGAGGAGTTGTTCATGTGTCCCTACTTGTACCTCTGGTGTGCACTGAAAATGATCCAAGTCACAACAGCATTAGTGCTACATTATTGGGAAGCCAGTTAGGCCTAAAGGGTGTTGCTGGAAAGGAGTTATTTAACATATCTTTGTTCTTGCACCTCCAATCTCAAATATCAAGCACAGCCTCTAACTCTGCCTTTGATCCAAAATTGCCTACTGAGGCTGAAACGAAGCCTTCCATGTCCTGCTTGAAAATTTCAGCTCCTGCTCACCTTCTCCCGCTGAGATCGGAACCTCCAGAATGCCCTGCAAACTACAACCCAGAGAAGGATATTTCTCCTGTCAGAGTCTTTGCTACAGAATCATACAGGCAGGATTCTGATAATGCATCTCCATGCCTCATCTTAAAGTTTACACCTGACCCCAAACTGACTGTGCTACTTACTCAGGAAGAGAAAGCACTAGCTAGATATCATCTGATGCTGGTGAGCGTTGTGCTGTTGGCTGTCTGCAGCATGATGTGCCTTACTGGAACTCTTACCTGCTCCAGGCCTCGGCGTCACCTTGCCAACGATCTTCATTTCCAAAAGGTGACTGCTGGGGTCCTGAGCATGTGACATTCATGTTGAAAAGTAAACAAAAGaccatcaatttttttaagtgtgtttcctatatatttaaattaataagttTATTAAACACTTTCACTCTTTGAGGTGTAATCATTGCATTAAAATGTTGTTCCAACTTTG

Function

GO:

id name namespace
GO:0008033 tRNA processing biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672315.1 True 1292 mRNA 0.43 7 21043481 21047306

Neighbor

gene id symbol gene type direction distance location
morc2 morc2,LOC107674835 coding downstream 1451 21021966 ~ 21042030 (-)
LOC103038341 LOC108428358 coding downstream 35835 21004053 ~ 21007646 (-)
LOC103036040 ankrd26,LOC108428422 coding downstream 68732 20939918 ~ 20974749 (-)
LOC103034889 LOC108428424,LOC108274948 coding downstream 115207 20923738 ~ 20928274 (-)
LOC103033709 LOC103033709,LOC108428427,LOC105941050,LOC101483816 coding downstream 132623 20908879 ~ 20910858 (-)
LOC103041246 cd151,LOC103041246,LOC108410837,LOC107674842,LOC107655143,LOC107561168 coding upstream 24749 21072055 ~ 21084451 (-)
pus7 pus7 coding upstream 41313 21088619 ~ 21098682 (-)
LOC103042467 rps17,rs17,LOC103042467,LOC107389132,LOC108428414 coding upstream 142739 21190045 ~ 21197519 (-)
LOC103043194 csnk1g1,LOC108415052,LOC108274686,LOC106573333,LOC107738908,LOC107559435 coding upstream 151944 21199250 ~ 21235118 (-)
pclaf kiaa0101 coding upstream 189326 21236632 ~ 21238194 (-)
G75367 NA non-coding downstream 56719 20986194 ~ 20986762 (-)
G75366 NA non-coding downstream 57829 20979402 ~ 20985652 (-)
G75357 LOC108428367 non-coding downstream 129395 20912831 ~ 20914086 (-)
G75295 NA non-coding downstream 248522 20794484 ~ 20794959 (-)
G75286 NA non-coding downstream 474124 20568847 ~ 20569357 (-)
G75426 chid1,LOC107674841,LOC107655144 non-coding upstream 14152 21061458 ~ 21063620 (-)
G75424 NA non-coding upstream 17042 21064348 ~ 21065147 (-)
G75444 LOC108428417 non-coding upstream 125316 21172622 ~ 21175068 (-)
G75447 NA non-coding upstream 137569 21184875 ~ 21187745 (-)
G75451 NA non-coding upstream 197958 21245264 ~ 21245530 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other downstream 295273 20622641 ~ 20748208 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other downstream 943231 20084428 ~ 20100250 (-)
G75207 api5,LOC107696269,LOC107753602 other downstream 1011454 20027162 ~ 20032027 (-)
G75100 LOC108436948,LOC108275266 other downstream 1177499 19859694 ~ 19865982 (-)
G74838 wasl,LOC105896696,LOC108275301 other downstream 1970593 19070938 ~ 19072888 (-)
gatd1 pddc1,LOC102788149 other upstream 18013 21065319 ~ 21071246 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other upstream 222198 21269504 ~ 21273017 (-)
LOC103024007 LOC108428399 other upstream 1395430 22442736 ~ 22574013 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other upstream 2277271 23324577 ~ 23366216 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other upstream 2779908 23827214 ~ 23833068 (-)

Expression


Co-expression Network