LOC103047162 (nell2,LOC108428412,LOC107695006,LOC107710867)



Basic Information


Item Value
gene id LOC103047162
gene name nell2,LOC108428412,LOC107695006,LOC107710867
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 21317532 ~ 21460874 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_022672326.1
ctcactctctctctcactctctggctGTGGGAGCTCGATAACGGACGGCTCCTCACGctgttcctctcctcctcttccttctcctcctctcacacagctctgctgggtggtgtttcagtgttttaccGGGGTCTCGTGTCTCTCGCGCTCCTGCAGGAGGAGTGTGTTGGTGTTTTCTGAGGTGTGTCCTGGTGTTTAAGTTCAGTGGTGATGCGGAGTTGAACATTTCGGAATGTGTGAGACCTCGCTGGGTTGAAACACGACGGTACGGGATTCCTGTGCTGAACGCCTCGTTTTCTGGAAGAGCTTTAAAACATGGACTAATTTCAGCTTCGCCATGGGGTTACTTCAGTTTCTGCTCGCGTTCGGAGTGTTTTTCTTCTCCTCAGTTGTAGGTCTCGGTGTGGACCCTTCTCTCATCATCAGCGTGTTTCAGGATTTCAGCCCTGGAGCAGATTTCACGGGAGTTTCTCAGGTGCAGGGCTTCCACGACGAGTCCAGAGCCTTCCTCTTCCAAGGGTCCTCTAGGAATGTGAGAGTGCCGGAGGAGACGGCGCAGCGGATGCTGCAGAAACTGAGGGGGAAGAGCGAGTTCACCGTGGCTGTCACTCTGAAGCAGGAGCAGCTCAACTCTGGAGTCTTCCTGTCCATCCACCGTGCCGAGCAGAGGTATTTGGAGCTGGAGAGCAGTGGACAGAAGAGTGAAGTGCGTCTCCATTTCCAGACCAAAGGacagcagacacacacagagatctTCCCCTACACCCTCGCAGACAACCAGTGGCACAAAGTGTCAGTGGCCATCAGCGCCTCCCACGTCACGCTTTATGTGGACTGTAACAGGATCTACGAGAGAGTGGTGGCTGTCCCTCTCATGGACATCCCTGAAGATGCCTCCTTCTGGATTGGACAAAGGAACAGTGCACATGGCTTATTCAAGGGGGTGATGCAAGATGTTCAGATACTTGTGATGCCTCAAGgttacatcacccagtgcccagATCTAAATCGCactTGTCCAACCTGTAATGACTTCCATGGACTTGTACAGAAAATTATGGAACTCCAAGATATCTTGGCTAAAACATCCAGCAAGCTGTTACTGGCAGAGGAGAGAATGAACGGCCTGGATAATTGCTATTGTGAGCGGACGTGCAGCGTGAAGGGGGTGACCTACAGAGAGGACCAGGCCTGGACAGATGGCTGCAAGAACTGCACATGCACGAACGGGACGGTTCAGTGTGAAACCATTGTGTGTCCTCCCCTGGAGTGTCCGGATGGTTCAGTCCCTGCCTATGTGGCAGGAGAGTGTTGCAAGAAATGTCAGCCTATGTGTCTGTTTACTGGACAAGAGTTAGTGGAGGGAGACAAAAGAGCTGTGCATCACCCCACTGGACTGTGCCTACTCTATGAATGCAGGGGCCGCACCATGCACAAAGTCCAGAACAGCGACGAGTGCCCCGAGCTCAAATGTCCTGAGGCAGAGCAGCTGACTGTTTCTGACAGGTGCTGCAAAGTGTGCAGAGGCCATGACTTCTGTGCGGAAGGCAACACCTGCATGGAGCACTCAGACTGTGTGAATCTGGATGCCGGAGCGAGCTGCAGCTGCAAGGAGGGGTTCCGCTCTCTTCGGCCAGACAATGCGTACTGTGAAGATATTGACGAGTGTGCGGAAGGGAAGCATTACTGCAGAGAGAACACGATGTGTGTGAATACACCCGGATCCTTCATGTGCATCTGCCATACTGGATACATCCGCATCGATGACTACTCCTGCACCGAGCATGATGAGTGTGTGTCAGGACAGCACAACTGTGATGAGAATGCACtgtgttttaacactgtgggAGGACACAGCTGCTCCTGTAAACCTGGCTACACAGGCAATGGAACCATCTGTAAAGCTCTGTGTGATGGCCTGTGTCTGAACGGCGGCTCCTGTGTCTCTCCTAATACCTGTGTGTGCACGCAAGGCTTCACTGGGCAGAGGTGTGAGACAGATATCGACGAGTGTTCAGAGGGCTTTGTGGAGTGCGACAGTCACGCTACCTGTGTGAACCTGCCTGGCTGGTACCACTGCGAGTGCCGGGATGGATACCACGACAACGGCATGTTCACTGCCAACGGAGAGTCATGTGAAGACATAGATGAGTGTAAAGTGGGCAGAAGCACCTGCGCCAATGACACTATCTGCTTTAACCTGGATGGAGGATACGACTGCCGGTGTCCCCATGGACACAACTGTACTGGCGACTGTATCCATGACAACAAGGTGAAGCACAATGGGCAGATCTGGGTCCTGGACAACGACAGGTGCTCCGTCTGCTCGTGCCAAATGGGGCAGGTGATGTGCAGGCGGATGGTGTGTGACTGTGAGAACCCCACTGTGGATCTGTTCTGCTGTCCGGAGTGTGACCCGCGCCTCAGCTCTCAGTGCCTGCACCAGAACGGCCTGCTCACTTACGCCAGCGGAGACACCTGGACAGAAAACTGCCAGCAGTGCCAATGCCTGCAGGGAGAGGTGGACTGCTGGCCGTTGTCCTGCCCCCCGGCGGACTGTGACTTCACGCTGGTGCCTGAGGGTGAGTGCTGTGCCCGCTGCGTGTCGGACCCGTGCCAGGCTCACAGCGTCCGCAACGACATCACCAAGACCTGCGAGGACGAACACGGCATCACACGCTTCAGCGGCTCCTCCTGGCTCAAACACGGCACAGAGTGTACCCTCTGTCAGTGCAAGAATGGACATATCTGTTGCTCAGTGGACCCGATGTGCCTTTAGCTGCAAACCAGAGCACTAAAGGCACATGTACAGTCTTTCTCCATTTACCAGAAGCTCACCCTCACCACCCCGTCCCCAAACTACTTCTTTATACCAAatgcaaaatgtgtattaaacCAAACTGACGACAGAGAACCTCACTGTTCATATCTGCTACAGGAGGAGTTCATTTCTTCACACTGAGGCGAGACAGCTCATCTGATGTACTACTCTGTACAAAACGCTGTATACACTGGCATGACCACACTGGATGTTAAAAAGCATATTCTTTCATTTCTGAGTCGTTATGAACCTAGAAAAAGAAGTAGGCATTCTAGATAGTAAGTAAACGTTATTGTACTTCTCTTTCGTCACATTATGGAACTTGTCTATATTTTGTGATTCcataaataacacttttttgttacgctttctgtttttcttttcttttatttcacgGTTTTAAACGATTCTACCGCTTGCTCTTAACTAATGGTGAAATAAAgtatttccatttccattta
>XM_022672327.1
ctcactctctctctcactctctggctGTGGGAGCTCGATAACGGACGGCTCCTCACGctgttcctctcctcctcttccttctcctcctctcacacagctctgctgggtggtgtttcagtgttttaccGGGGTCTCGTGTCTCTCGCGCTCCTGCAGGAGGAGTGTGTTGGTGTTTTCTGAGGTGTGTCCTGGTGTTTAAGTTCAGTGGTGATGCGGAGTTGAACATTTCGGAATGTGTGAGACCTCGCTGGGTTGAAACACGACGGTACGGGATTCCTGTGCTGAACGCCTCGTTTTCTGGAAGAGCTTTAAAACATGGACTAATTTCAGCTTCGCCATGGGGTTACTTCAGTTTCTGCTCGCGTTCGGAGTGTTTTTCTTCTCCTCAGTTGTAGGTCTCGGTGTGGACCCTTCTCTCATCATCAGCGTGTTTCAGGATTTCAGCCCTGGAGCAGATTTCACGGGAGTTTCTCAGGTGCAGGGCTTCCACGACGAGTCCAGAGCCTTCCTCTTCCAAGGGTCCTCTAGGAATGTGAGAGTGCCGGAGGAGACGGCGCAGCGGATGCTGCAGAAACTGAGGGGGAAGAGCGAGTTCACCGTGGCTGTCACTCTGAAGCAGGAGCAGCTCAACTCTGGAGTCTTCCTGTCCATCCACCGTGCCGAGCAGAGGTATTTGGAGCTGGAGAGCAGTGGACAGAAGAGTGAAGTGCGTCTCCATTTCCAGACCAAAGGacagcagacacacacagagatctTCCCCTACACCCTCGCAGACAACCAGTGGCACAAAGTGTCAGTGGCCATCAGCGCCTCCCACGTCACGCTTTATGTGGACTGTAACAGGATCTACGAGAGAGTGGTGGCTGTCCCTCTCATGGACATCCCTGAAGATGCCTCCTTCTGGATTGGACAAAGGAACAGTGCACATGGCTTATTCAAGGGGGTGATGCAAGATGTTCAGATACTTGTGATGCCTCAAGgttacatcacccagtgcccagATCTAAATCGCactTGTCCAACCTGTAATGACTTCCATGGACTTGTACAGAAAATTATGGAACTCCAAGATATCTTGGCTAAAACATCCAGCAAGCTGTTACTGGCAGAGGAGAGAATGAACGGCCTGGATAATTGCTATTGTGAGCGGACGTGCAGCGTGAAGGGGGTGACCTACAGAGAGGACCAGGCCTGGACAGATGGCTGCAAGAACTGCACATGCACGAACGGGACGGTTCAGTGTGAAACCATTGTGTGTCCTCCCCTGGAGTGTCCGGATGGTTCAGTCCCTGCCTATGTGGCAGGAGAGTGTTGCAAGAAATGTCAGCCTATGTGTCTGTTTACTGGACAAGAGTTAGTGGAGGGAGACAAAAGAGCTGTGCATCACCCCACTGGACTGTGCCTACTCTATGAATGCAGGGGCCGCACCATGCACAAAGTCCAGAACAGCGACGAGTGCCCCGAGCTCAAATGTCCTGAGGCAGAGCAGCTGACTGTTTCTGACAGGTGCTGCAAAGTGTGCAGAGGCCATGACTTCTGTGCGGAAGGCAACACCTGCATGGAGCACTCAGACTGTGTGAATCTGGATGCCGGAGCGAGCTGCAGCTGCAAGGAGGGGTTCCGCTCTCTTCGGCCAGACAATGCGTACTGTGAAGATATTGACGAGTGTGCGGAAGGGAAGCATTACTGCAGAGAGAACACGATGTGTGTGAATACACCCGGATCCTTCATGTGCATCTGCCATACTGGATACATCCGCATCGATGACTACTCCTGCACCGAGCATGATGAGTGTGTGTCAGGACAGCACAACTGTGATGAGAATGCACtgtgttttaacactgtgggAGGACACAGCTGCTCCTGTAAACCTGGCTACACAGGCAATGGAACCATCTGTAAAGCTCTGTGTGATGGCCTGTGTCTGAACGGCGGCTCCTGTGTCTCTCCTAATACCTGTGTGTGCACGCAAGGCTTCACTGGGCAGAGGTGTGAGACAGATATCGACGAGTGTTCAGAGGGCTTTGTGGAGTGCGACAGTCACGCTACCTGTGTGAACCTGCCTGGCTGGTACCACTGCGAGTGCCGGGATGGATACCACGACAACGGCATGTTCACTGCCAACGGAGAGTCATGTGAAGACATAGATGAGTGTAAAGTGGGCAGAAGCACCTGCGCCAATGACACTATCTGCTTTAACCTGGATGGAGGATACGACTGCCGGTGTCCCCATGGACACAACTGTACTGGCGACTGTATCCATGACAACAAGGTGAAGCACAATGGGCAGATCTGGGTCCTGGACAACGACAGGTGCTCCGTCTGCTCGTGCCAACAGGGAGAGGTGGACTGCTGGCCGTTGTCCTGCCCCCCGGCGGACTGTGACTTCACGCTGGTGCCTGAGGGTGAGTGCTGTGCCCGCTGCGTGTCGGACCCGTGCCAGGCTCACAGCGTCCGCAACGACATCACCAAGACCTGCGAGGACGAACACGGCATCACACGCTTCAGCGGCTCCTCCTGGCTCAAACACGGCACAGAGTGTACCCTCTGTCAGTGCAAGAATGGACATATCTGTTGCTCAGTGGACCCGATGTGCCTTTAGCTGCAAACCAGAGCACTAAAGGCACATGTACAGTCTTTCTCCATTTACCAGAAGCTCACCCTCACCACCCCGTCCCCAAACTACTTCTTTATACCAAatgcaaaatgtgtattaaacCAAACTGACGACAGAGAACCTCACTGTTCATATCTGCTACAGGAGGAGTTCATTTCTTCACACTGAGGCGAGACAGCTCATCTGATGTACTACTCTGTACAAAACGCTGTATACACTGGCATGACCACACTGGATGTTAAAAAGCATATTCTTTCATTTCTGAGTCGTTATGAACCTAGAAAAAGAAGTAGGCATTCTAGATAGTAAGTAAACGTTATTGTACTTCTCTTTCGTCACATTATGGAACTTGTCTATATTTTGTGATTCcataaataacacttttttgttacgctttctgtttttcttttcttttatttcacgGTTTTAAACGATTCTACCGCTTGCTCTTAACTAATGGTGAAATAAAgtatttccatttccattta

Function


symbol description
nell2 Predicted to enable heparin binding activity and protein kinase C binding activity. Predicted to be involved in development of secondary female sexual characteristics; neuron cellular homeostasis; and positive regulation of hormone secretion. Predicted to be located in extracellular region. Predicted to be active in cytoplasm.

NR:

description
PREDICTED: protein kinase C-binding protein NELL2-like

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K24342 NELL; protein kinase C-binding protein NELL

RNA


RNA id representative length rna type GC content exon number start site end site
XM_022672326.1 True 3282 mRNA 0.52 20 21317532 21460874
XM_022672327.1 False 3105 mRNA 0.51 19 21317532 21460874

Neighbor


gene id symbol gene type direction distance location
LOC103046854 NA coding upstream 24209 21274942 ~ 21293323 (+)
LOC103044722 LOC108428364 coding upstream 44501 21270738 ~ 21273031 (+)
srpk2 LOC108428417,LOC106560984,LOC108248824 coding upstream 130096 21100409 ~ 21187436 (+)
chid1 chid1,LOC107655144,LOC107674841 coding upstream 252691 21059432 ~ 21064841 (+)
thoc5 thoc5 coding upstream 259692 21047896 ~ 21057840 (+)
LOC103047464 twf1,LOC108428409 coding downstream 105494 21566368 ~ 21578864 (+)
LOC103046961 LOC107694983 coding downstream 183764 21644638 ~ 21745964 (+)
LOC103047463 prickle1,LOC107726281,LOC107695002,LOC107741965 coding downstream 405101 21865975 ~ 21912295 (+)
LOC103022337 yaf2,LOC108428404,LOC103358851 coding downstream 487681 21948555 ~ 21955139 (+)
LOC103021604 LOC103021604,LOC108428402 coding downstream 495698 21956572 ~ 21971236 (+)
G75413 kiaa0101 non-coding upstream 79066 21236592 ~ 21238466 (+)
G75405 NA non-coding upstream 113509 21199287 ~ 21204023 (+)
G75390 rps17,rs17,LOC106527967,LOC107389132,LOC103042467 non-coding upstream 121761 21190766 ~ 21195771 (+)
G75403 NA non-coding upstream 169183 21147808 ~ 21148349 (+)
G75381 NA non-coding upstream 270252 21046815 ~ 21047280 (+)
G75577 NA non-coding downstream 290052 21750926 ~ 21751248 (+)
G75627 NA non-coding downstream 571285 22032159 ~ 22032470 (+)
G75664 NA non-coding downstream 978156 22439030 ~ 22439325 (+)
G75689 LOC103026897,LOC108428397 non-coding downstream 1169320 22630194 ~ 22633409 (+)
G75734 NA non-coding downstream 1290661 22751535 ~ 22751999 (+)
mov10l1 NA other upstream 52756 21250467 ~ 21264776 (+)
G75391 pus7 other upstream 220626 21088622 ~ 21096906 (+)
G75383 morc2,LOC107754332,LOC107701074,LOC107674835 other upstream 292404 21023256 ~ 21025128 (+)
LOC103028745 NA other upstream 1109577 20203619 ~ 20207955 (+)
LOC103044129 NA other upstream 1779915 19527212 ~ 19537617 (+)
LOC103028957 rfx7,LOC108428391,LOC108275305,LOC107695007,LOC107563886,LOC100538179,LOC107741823,LOC100694937 other downstream 1294099 22754973 ~ 22780959 (+)
LOC103047784 LOC108428360,LOC108274708 other downstream 1320861 22781735 ~ 22815522 (+)
G75938 LOC105900730,LOC105912833 other downstream 2026656 23487530 ~ 23487870 (+)
G75974 NA other downstream 2454917 23915791 ~ 23917603 (+)
LOC103038709 LOC103038709,LOC108432651 other downstream 2571218 24032092 ~ 24037861 (+)

Expression



Co-expression Network