LOC103022337 (yaf2,LOC108428404,LOC103358851)


Basic Information

Item Value
gene id LOC103022337
gene name yaf2,LOC108428404,LOC103358851
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 21948555 ~ 21955139 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672331.1
CTTCCGCCTGGAGTTTGCGCGACAGCTGGACAGGGAGGTCTGCTCGGTGGGAGGATTTGGGGTCCAATTTCTGTATACTTTAATTACTGTAACATCCTGCTGAAATGGGAGACAAGAAGAGCCCGACGAGGCCGAAGAGACACTGCAAGCCCCCGTCGGACGAGGGCTACTGGGACTGCAGCGTGTGCACTTTCAGGAACACAGCCGAGGCGTTCAAATGTATGATGTGCGACGTACGAAAAGGGACGTCAACTCGTAAACCTCGCCCCGTTTCTCAGATTGTGGCTCAGCAAGTACCGGCACAATTTGCTTCACCTACACAACCCaaaaaggagaagaaggaaaagaCGGAGAAGGACAAAAACGACAGGGAGCCAGCAGTGAAAAAGAACGGTCACAAAAAGATGAGGCCACGGTTAAAAAACATCGACAGAAGCAGTGCACAGCACTTGGAAGTTACAGTGGGAGATTTGACAGTCACCATCACAGACTTTAAGGAAAAAACAAAGCCcctgtcctcctccaccagcacATCCTCCACAGCCACGTCAGCAGATCAACACAGCCAGAACGGATCCAGCTCAGATACCACAGAGAAAGCAGTGTCCAGATCATCCTCTCCTCGAGGTGAAGGCACGTCTGTGAACGGAGACCTACACTAACCCCCCCGAGAACTCCAAAATTTTATGAAAGGTCAAAGATGTTGCCGACAGAATCACTTTAGTCGCTCCATTCACTCTGACTCATTCTCACCTGGACTGGATGGGACTGAGTGTTCCAGCATCATAGGAAGCTCTCAGTTCTTAGTAGGAGGAAATGCCCGTGTTGTTTgtcacaacaaaaaaatactctgtCTTCTGTCTTAATGCTCTGTCTTTCCTAAGCATTTGGAACTATATGCAGAGATGTTTTGGCTCAGAGACACTTGCTGAAGTTCCTGGAAGTAATGGATGATTCAAGAATGTATTTAAAGGCTATGGATTCTACTGTGCTTCTCAGTCTCATGCACTACACATGCCTGTATGATCTGTATATATCTGATTCAATTGAGGTAATTATTTAGTGGGTCAGGTGTGTTACAtatgtaaaaacaaacatgtaCTGAGCAGGGTTTCTAGTACTGAGACAGAGAACCACTAGTGCAGTGTATAGTCATAATATTGTGAGGTTCAAATAACATAGTTATTGTTtctattaattttacttaaggACTATTTTGGTATGAGTTTTATACTCATGAATGGTTTACAGAGCATAAATGTGAAGAGGTTTGTATAGTGACTGTTATTAGTAGACCCTAAATAACTGGGATACAGGCACTGTTATAATATCTGGAAATATAATTTTTGAAACAGTTTCAAAGTTACTTCACtgatttttataaattttaaaagaacattttccctgttactacaactttactgagaaaaatatatttaataatatgaaaagtttttttaaatgaatttgtgTTTTCTTAACAGATTCATGTTTGCACTTAGAGTCTTTCCACCATGGTGTGCATCATGTCCAGCATTTATGTGCATTTATGACAGTCATGTGGAAAAAGACACTGTTAATGATAGTGCATATACtattaaatatatagtatatcttAAGAATGGCCTGatattatacaaatattaatGCTGGACTTAATGCAGGAACATGATGTTGAAAAGTGGTGGAGCGTTCTTTTCATAAGCGTTTATTTactgcaaaacttttttttttttttttt

Function

symbol description
yaf2 Predicted to enable DNA binding activity and transcription coregulator activity. Acts upstream of or within forebrain development and negative regulation of apoptotic process. Predicted to be active in nucleus. Is expressed in forebrain; head; and midbrain. Orthologous to human YAF2 (YY1 associated factor 2).

NR:

description
PREDICTED: YY1-associated factor 2-like

GO: NA

KEGG:

id description
K11468 YAF2; YY1-associated factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672331.1 True 1741 mRNA 0.41 4 21948555 21955139

Neighbor

gene id symbol gene type direction distance location
LOC103047463 prickle1,LOC107726281,LOC107695002,LOC107741965 coding upstream 36260 21865975 ~ 21912295 (+)
LOC103046961 LOC107694983 coding upstream 202591 21644638 ~ 21745964 (+)
LOC103047464 twf1,LOC108428409 coding upstream 369691 21566368 ~ 21578864 (+)
LOC103047162 nell2,LOC108428412,LOC107695006,LOC107710867 coding upstream 487681 21317532 ~ 21460874 (+)
LOC103046854 NA coding upstream 655232 21274942 ~ 21293323 (+)
LOC103021604 LOC103021604,LOC108428402 coding downstream 1433 21956572 ~ 21971236 (+)
LOC103027184 LOC108428395,LOC108275251,LOC103155695,LOC105938547,LOC106919346,LOC107706850,LOC103466445,LOC107552424 coding downstream 682021 22637160 ~ 22666809 (+)
rsl24d1 rsl24d1,LOC107694994 coding downstream 865978 22821117 ~ 22824416 (+)
fam96a fam96a,LOC107673635 coding downstream 1463527 23418666 ~ 23425305 (+)
saal1 NA coding downstream 1724078 23679217 ~ 23687396 (+)
G75577 NA non-coding upstream 197307 21750926 ~ 21751248 (+)
G75413 kiaa0101 non-coding upstream 710089 21236592 ~ 21238466 (+)
G75405 NA non-coding upstream 744532 21199287 ~ 21204023 (+)
G75390 rps17,rs17,LOC106527967,LOC107389132,LOC103042467 non-coding upstream 752784 21190766 ~ 21195771 (+)
G75403 NA non-coding upstream 800206 21147808 ~ 21148349 (+)
G75627 NA non-coding downstream 77020 22032159 ~ 22032470 (+)
G75664 NA non-coding downstream 483891 22439030 ~ 22439325 (+)
G75689 LOC103026897,LOC108428397 non-coding downstream 675055 22630194 ~ 22633409 (+)
G75734 NA non-coding downstream 796396 22751535 ~ 22751999 (+)
G75760 NA non-coding downstream 946139 22901278 ~ 22902077 (+)
mov10l1 NA other upstream 683779 21250467 ~ 21264776 (+)
G75391 pus7 other upstream 851649 21088622 ~ 21096906 (+)
G75383 morc2,LOC107754332,LOC107701074,LOC107674835 other upstream 923427 21023256 ~ 21025128 (+)
LOC103028745 NA other upstream 1740600 20203619 ~ 20207955 (+)
LOC103044129 NA other upstream 2410938 19527212 ~ 19537617 (+)
LOC103028957 rfx7,LOC108428391,LOC108275305,LOC107695007,LOC107563886,LOC100538179,LOC107741823,LOC100694937 other downstream 799834 22754973 ~ 22780959 (+)
LOC103047784 LOC108428360,LOC108274708 other downstream 826596 22781735 ~ 22815522 (+)
G75938 LOC105900730,LOC105912833 other downstream 1532391 23487530 ~ 23487870 (+)
G75974 NA other downstream 1960652 23915791 ~ 23917603 (+)
LOC103038709 LOC103038709,LOC108432651 other downstream 2076953 24032092 ~ 24037861 (+)

Expression


Co-expression Network