LOC103024697



Basic Information


Item Value
gene id LOC103024697
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 24899036 ~ 24919450 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_022672384.1
ACCCCTTCCCACACAACGAGATACgggaagagaaagggagataatgaaagaaggaggaagatggggaggaggtgggtgcgaggttgttcTACACGCAGGTAGAAAGTGAGGGTTTATATAGGGCGGAGAGTGGGACGAGTAAGGGCGTCCATCAAACTCCAAAAATTAAGTTTTAACTCCACATATAGCTGGACCCTACATGGACTagtttttgggattttttttttcctgttgttaAATTCAGCCTTAAATCTTTCAGAAACCTCAACTGATATTCCCCCTGCCTCAGTGAGCGTTGAATCGGTGGGGAACAGTGGGGGGATGTCAGCTGACAGAGGTGAAGCTGAGTGGTTAAATATGAGGTGGGTTTCCCGGATCTGAGTCGGTTCTTAATGTAAATGAGTCACCACATCCCACAATAACAAAAACACTGCGCAGTAACTCGTGAGTCATACGAACAAGACACCACTTTAATTCAGGTCATGGTCAACCGCCAGCCCTGTATTTACCAGCAGGACtactctttcactttctctctccctcagcaCACACTCCCCTTTCTTCcatcactccacacactcccctgacttcacacactcctctcactctcctctAGCCTTGTAATATGGCCGTAGCTACATGTTTCCGGTTTTTCTGTGAGCATTACTCTGTGTTTCAATATACGGCGGAGTGACTCGTTAACTGGGTGATCCGGTTCACTTCGCCTGCGCACAGTTCTTGTTTCAGGAATTCGGATCATCTAGATCACACACCCACCCTGcgttcttcctcctcctgcagagtCAATATGGTGAACTGCGGCTTGTTGACGGTGGAAAAAGAACCTGTTCCTCTGAAGAGCATAGAGGTGGAACTGCAGGTTCAGGGCCATGTAGCCACTGTGAGCTCCACCCTGCAGTATAAAAATGAAGAACAGAGCCCCCTGGAGGCCCTTTTTGTCTTCCCCATTCCAGCAGATGCTGCTCTCTGCCACTTCAGTGCCAAAATTGGAGACCAGGAGATAGTATCGAAGCTGCAAGAGAAAGAGCAGGCTCGGTACGAGTATGATGATGCGATCGCTTCAGGTCAGCAGGCCTTTCTGCTGGAAGAGAGTGACGAGAGTGAGGATGTGTTTAAGCTGAGTGTGGGCAGTCTGCCTCCAGGCCAGAGTGCTGCTGTGACCTTCATCTACGTTACTGAGCTTTCTGTGCAGGCTGACCACTCCCTGCGCTTCTGCCTGCCTGCAGTACTCAACCCTCGCTACTTACCACCAGGTAGCGACAGTGGTATAGTGTCAGAGATAACAGTATCAGAAAGTAtcccttattctctctctttcactgccACTGTGAGCTCTCCCAACCCTGTCGCTAAAGTAGAGTCCAAGTGTGCTCTTGATCCTCTGGTGTTCCTCAACGCAGAACGGACCAGTGCAAAGgtgagTCTGTCTGTGGGTCATAAGTTTGACAAAGACGTggagctgtatttatattatGAGAATGCCCACCAGCCCACTGCTATAGTGGAGGCAGCAGTGCCCACTGCAAAGCAAGgaactcTAATGGGAGACCCTGTAGTCATGCTGAGTTTGTACCCAGACTTCCCTGAGGCAGTAATGTCATCCATGTCATCTCGTGGTGAGTTTGTGTTCGTAATGGACAGATCCGGCAGTATGGCCTGTCCAATGCATTTTGGATCTGGTGCACAGGAACGCATTGAGAGTGCCAGGGACActctgctcctgctgctgaagAGTCTTCCCTTGGGCTGCTACTTCAATATATATGGCTTTGGTTCAAGCTACGAGTCTTACTTTCCGACGAGTGTGGAATACACTCAGAAGACAATGGACGAGGCTGTAAACAGAGTAAAGGACATGCATGCAGATTTGGGTGGCACTGAAATTCTAGAGcctctaaaacacatttacaagcAGAAGTGCATTCCTAACCACCCCAGACAGGTGTTCATTTTCACCGATGGAGAAGTGGGGAACACCAAACAAGTTATTTCCCTCGTGAAAAAAGAGGCCAAGTCCCACAGGTGCTTCACATTTGGAATTGGAGAAGGTGCAAGCACCGCCCTCATAACAGGAATGGCCCAGAATGGACGCGGCCACGCCCAGTTTATAACAGGATCTGACCGCATGCAACCCAAAGTAATGCAGTCTCTCCACTACGCTTTACACCCAGCTGTAGATGATATTACTGATGTGTGGACAGTTCCAGCAGGCATGTCCACCACCCGCCTAAGCCCACCACTTAGTGTTATCTTCCAGGGTCAGAGGGCACTAATTTATGCCCAGCTGAAAGGACAGTGTAAGAGCTCAGACTCAGAGGGCACAGTAACAGTGAAGTACCGACTAGCTGGTCAAGAAGTCTCCAACACTCTCAGCTTTTCCCTCAAACCTGCTGAGAATACCGGacTCTCCATTCACAGACTGGCTGCCCGGTCTCTGATCCGCTCTCTGGAACGGCAGGAGCAGACTGAGGGACCAGAAGCTTTAAAGGCCAGAGTGGTGGAGCTCAGTGTGGAGGCTGGAGTGAGCTGCTCACATACTGCCTTCATCGCTGTTCATAAGAGCAGTGGAGAGGCTGTGAAAGGACCAATGTTGAAGAGGAACATCCCGACACCAGGAATGGCGCTTTATGGTGCACAAATGTTTTCGGCAACGCCATTATGCGCTTATGGAGGACCTGTACCAAGATCCGCACCACGAATGAAGTGTTCGTCACCACTGGGAGCATTTGGAAGTCGACCGAAATTGTTTGGTGGCGGTGGCAGTcttttcaaaaagaaaaaaaagcagagaaaagagaGTGGAAACTATCCTGTTAAATTGGATAAGATGCAATGGATGAATGAAGAGGTAGAGGAGGCGTGCGCTTTGACAcctaCAGGTGCATTGTATTATGAAGGCAAAGCTGACTTTTGTAATGCTGACATTTGTGAAGAACAGTCTGAACCAAGTTCAGATGTGCAAGAAATTGGAGACCCTTTGCTGCAACTCGTCTCCCTCCAAAAGGCTTCAGGCTGCTGGGAAATGAACGGCACTCTGGCGAAAGTGTTTGGAAAGACAGAAGGAGAGGTGGTCAAGCAGACCCCTGCACAGGTGGATAAGGGGGTCTGGGCTACAGTTCTGGCTCTGATCTGGTTACATGGCTTTAAGATGGACGATCAGATCGAGTGGCAGTTTGTTGCAAAAAAAGCAGCAGCCTGGATCCGTGACCAGAAAGTGGCCAACCTTTCTGAGTGTGTTCGTGAGGGCAATGCTCTGCTGGGCTGCCAGGTTAAAGAAGAGGCTCTTGGGTTCTGAAGTCTTCAGAGTTCTTCTgcacacaaaaaataactttCAACATGCACTTGATTTGCTTAATGCAGTATTGGTCTTTACAATTTTACTTACCCAATGCCACTGATAAATCggttttattattctttactTAAATCAGGCTCGTAGCCATGGGGGATCGAAGGGTTCGTTCGAtccaccccccccccatcccccccctcAGCCACCAGAGTAGTGACGAGTAAGAAAAAttgttaatgtttctctttacacattttgttcagactgttttacACCAATCCAGTAGGTGGCGGCAATTCCCCCATTTCTGTTCTTAGCTTGTGGAAAGAATAAGAATCAGGGGAAAGTTACTTGacaaaatgggtaaaaaaagaagacaaggagCGAAAACGGAAGAAAACGGCGGTAACATTGTCCCAAAATATTGGTGACTTGTTCAAAAAAAGGCCCAAAATCGGTAAGCTGCTGAGTGCAGGGCTTCTATTTctttacaactcccctgcgttaaCAGTGCCGGGCTCGGCTAAGCCCAATAGTATAATTGTACATGTAACAccggattattactgttattattgcgataactccaaagtctggattttagttgatttttaagaaatgtaggttaagtgACAATAACATTCAGTCACTCACTTTGCAATGCTGACGATCAAGCTAGGGTGTATTTTACTCTCAACATGCCTGTTGCTCCTAAggccatatataaaa

Function


GO: NA

KEGG:

id description
K24510 VWA5; von Willebrand factor A domain-containing protein 5

RNA


RNA id representative length rna type GC content exon number start site end site
XM_022672384.1 True 4042 mRNA 0.48 22 24899036 24919450

Neighbor


gene id symbol gene type direction distance location
LOC111193061 NA coding upstream 27670 24865790 ~ 24871366 (+)
myrf myrf coding upstream 38110 24802002 ~ 24860926 (+)
fads2 fads2 coding upstream 158953 24725144 ~ 24740083 (+)
LOC103028282 syt7,LOC108432693,LOC107754343,LOC107551433,LOC107655153 coding upstream 251487 24426129 ~ 24647549 (+)
LOC103029007 si:dkey-201c1.2,slc25a22,LOC107561181,LOC107732297,LOC107551436 coding upstream 497311 24361414 ~ 24401725 (+)
LOC103025216 NA coding downstream 7563 24927013 ~ 24946686 (+)
hdac10 NA coding downstream 33375 24952825 ~ 24966947 (+)
LOC103044987 NA coding downstream 267175 25186625 ~ 25230901 (+)
gtf2h1 gtf2h1,LOC107572319 coding downstream 316969 25236419 ~ 25246778 (+)
hps5 hps5,LOC106584758 coding downstream 330180 25249630 ~ 25263215 (+)
LOC111193114 NA non-coding upstream 188085 24566804 ~ 24710951 (+)
G76226 NA non-coding upstream 312904 24561664 ~ 24586132 (+)
G76225 NA non-coding upstream 335876 24527631 ~ 24563160 (+)
G76217 NA non-coding upstream 436477 24441085 ~ 24462559 (+)
G76349 NA non-coding downstream 1685 24921135 ~ 24922440 (+)
G76367 NA non-coding downstream 64702 24984152 ~ 24984391 (+)
G76463 NA non-coding downstream 373955 25293405 ~ 25293928 (+)
G76468 NA non-coding downstream 397745 25317195 ~ 25318657 (+)
G76472 mpi,LOC106560745,LOC106584640 non-coding downstream 403943 25323393 ~ 25327069 (+)
LOC111193110 NA other upstream 499 24873400 ~ 24898537 (+)
G76192 NA other upstream 638530 24258509 ~ 24260506 (+)
LOC103035272 LOC108432640,LOC107569703,LOC107720762,LOC107670190,LOC107740887 other upstream 816192 24053061 ~ 24082844 (+)
LOC103038709 LOC103038709,LOC108432651 other upstream 861175 24032092 ~ 24037861 (+)
G75974 NA other upstream 981433 23915791 ~ 23917603 (+)
G76358 NA other downstream 27338 24946788 ~ 24948149 (+)
LOC103022391 parvb,LOC108432702 other downstream 55491 24974941 ~ 24983714 (+)
LOC103022708 NA other downstream 68946 24988396 ~ 25004515 (+)
G76423 NA other downstream 264635 25184085 ~ 25184732 (+)
LOC103026466 LOC108429386,LOC108274988 other downstream 351806 25271256 ~ 25281371 (+)

Expression



Co-expression Network