bbs4 (bbs4,LOC107754319,LOC107701057)


Basic Information

Item Value
gene id bbs4
gene name bbs4,LOC107754319,LOC107701057
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 25615420 ~ 25631771 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672425.1
GTTTTCAGGGGCCGCGTAGAAACCGGAAGTGTGTTTTCTGGAGCTGGAGGGATGGCTGATGAGGAGACGGTTAAAGCGgatGCTCCGCTGCCGGTGGCCACTGACCCTAAGAAGCCTCGTCTTAAAAAAGCCCCAGAACTTCCGATTCTAGAGAGGAGAAACTGGCTCATTCATCTTCACTACATCCGCAAAGACTATGAGACCTGCAAGGCCATCATTAAAGAGCAGCTCCAGGAGACTCAGGGCATGTGTGAATATGCTGTTTATGTCCAAGCTCTGATCCTGCGTTTGGAGGGGAAGATCCAGCAGTCGCTAGAGCTGTTCCAGAGCTGTGCCATCCTAAACCCCACCAGCTCTGATAATCTCAAACAAGTGGCCCGCTCCCTGTTTCTCTTAGGGAAGCATAAGGCCGCTATTGAAGTTTACAATGAGGCGGCCCGTCTCAACCAGAAGGACTGGGAGATCAGTCACAATCTTGGAGTTTGCTACATCTACACCAAGGACTTTAAGAGTGCTGAGGAGCAGCTCAACCTGGCACTGCAGCTAAACAAACATGACATGACCTACATGATGCTGGGAAAGATCTACCTGTTAGAGGGAGACACAGAGAAGGCAATAGAAATCTACAAGAAAGCTGTGGAgttctcctcagaGAACACAGAACTGCTGACCACACTGGGGCTGTTGTACATGCAGCTTGGAAAATATCAAAAAGCCTTTGAACACCTCGGGAATGCACTGACGTACGACCCAAACAATTACAAGGCCATCCTGGCAGCAGGCAGCATGATGCAGACGCATGGGGATTTCGACGTGGCCATGAATAAATATCGCGTGGCAGCGTTCACGGTGCCTGAGAGCCCCCCTCTCTGGAACAACATCGGCATGTGCTTCTTCGGAAAGAAGAAATATGTAGCTgCTATAAGCTGTCTGAAGAGAGCAAACTACCTGTCTCCGTTTGATTGGAAGATCCTGTATAACCTGGGTTTGGTGCACCTTACCATGCAGCAGTACGCCTCAGCTTTCCACTTCCTCAGTGCTGCCATTAACCTGCAGCCACGCATGGGAGAGCTGTACATGCTCTTGGCAGttgcTCTGACGAATCTGGATGATGTAGACAATGCACGCAGGTCCTATGAACAAGCCATTCAACTGGATACgTCCAACCCTCTGGTGAATCTGAATTTTGCAGTGTTGCTGTATAATCAGGGAGACAAGAAGGCTGCACTACAGCAATACCAAGAGATGGAGAAGAAAGTCAACATGTTGGTGGAGAGCAACAGCAACACTGAATTTGACCCAGAGcttaTTGAGATGGCGCAGAAGATGGGTGCAGCCCTGCAGGCGGGGGAGAATTTATTCTGGTCTAAACCAGGAAAAGAATCTAAGAACAGCCAGCATTCCTCTTCCAACAAGGCTGCTTCTTCCCAGCAGCCACTAGGCACCAATCAAGCTTTGGGCCAGGCCATGTCTTCTGCTGCTGGTTACAGCAAGAGCATTCGGTTAGCTACAGAGCCAGAGCCAGATGTGGAAAGCGCCCCGTCTCCCCCCACAGAGCCCCCCGGGGAAGCAGAGGCTGAAGATGATGTAGAGGAAGCCGTGGAGCCTCCTAAAgccaaagagaagaaaaagagcaaACCCAAAGCAGTGGCTGAATAGAGATGACCAAGCTCCTCCTTttcattttaagtgatttaattgttTATAAACTTTACAGAGCTGCATTTTCCAAGCTTCTCTTCTATAGAATCTCCAGACCCGTCCAGTATGATAGGAAAGGTGTACAGGTACGCTGGGAAAGTGACAAAAATTGAAAAAGTGGAGCATCTGGGGGACGCAGTCGATCAGGCTAGAAAGGATGTATACAGGATTCGTGTCCTATGAATGTATAGTGAtattttggtagaaatgttgtttgtataGCGTTTTCTAAGACActttaaaatatgtgtaaaatctTTAGTTATAAGCTGCTACGTTCTCATCAACCAGAACATCGTAAAACTTAACAACTGATTAGAAGAAAATGTCCTGGAACCAGCAAGACAggaaatatttcattaaaaatgaGCACATATGAGTGGTCAGTTGGAACATAGAACTCAACTGGAATGGCAATCTGAGGTTTTATTGATTGTACTATGTTGCTTTTGGAACAGaattattaattgtgttttttaatatactatatatacagtcataatATACATGGTGCTTGAAACTTTGTAAaccctttaaaatgttctatatttctgcataaatagaCTTAAAACACATCAGATTTTTACAAGACTGGTCAGGACTGTGCCAGAATAAACAGAACCATTTAGttgcagttattgctgcaaAGGGTCACACTTGATGCTAAaagcaaaggttcacatacttttgccacttacaaatatgtaatattggatcattttccccaataaataaatatatgaccaagattcatattttttgtcgtaattgtttaactgggttctctttatctacttttagtgtgaaaatctgataacattttaggtcatatttatgcaaaaatataaaacattctaaaGGGTTTACAAACCTTTAAGCACCACTGCACTTCTTTTTGTACAGGGTGTTTGTAAAGGCCATTTTCAAATGTAAAATAGATTGGTAGACTCTTTTGCATCCTTAATGCAATTATGCATTACATTAATGTAGCTCATTGCTTTTTCCagtgaatatactgtacattcacCGCACATTTCATTAGGAATGAAAGGCTTCTCACAGTAATGTTACCaaattattatacagtatatataaagtGCTTGGCCCAGTGGCCTACTCAGATCAACTGTTTAAAAATGCTCATATTCCAATCCCGAttgctgaatttttttttttttttttttggcaaaattgAGTTACTATGCTTTATTGTTTTACTGACATAGTATGGTCTTAAATTAACAATATTGTTCCACAATTGTTTGAGACAATTCATTGTCAAAAAcattgttattgtgacagacctaatAATAGGTTGGAGCACCTTTTCGGCTTTTGAAACGGCTTAATTTAATATTGTATGGATTCATCATTCCAAGCTATGCTTTCCTAGTCCTCAGCTATCTAGTTATAGTGAGCCTGTGCCctctgcagcctcagctttctgttcttgactGAAAGAGGTGGAACCTTGCGTggtttgctgctgctgttgtccaTACAATTCAAAGTTAATTGTGTTGTGtgttctgatttattttttcttacattaaaaTTCAGGTGACCACATTGGTTTTTagagttactgtagcctttctgtcagctccaacCAATCCAAGCAGTTTCCATTAAACTCACCTAATTAATTTGCATCTGTAGAACTGAAAGCATTACTGGACGAATGAGTGcaagtgttcctaataaagtgttcAGTCAGTGTTTTTGAGCTtcgtttaaaaaacacaacataggTCTGCATTATGTATGTTGGAATTTTATTGAATTAAAGTGTAGTTTACTAAA

Function

symbol description
bbs4 Acts upstream of or within several processes, including Kupffer's vesicle development; embryonic morphogenesis; and establishment of pigment granule localization. Predicted to be located in ciliary membrane and microtubule organizing center. Is expressed in eye photoreceptor cell. Used to study Bardet-Biedl syndrome and ciliopathy. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome 4; morbid obesity; and obesity. Orthologous to human BBS4 (Bardet-Biedl syndrome 4).

NR:

description
Bardet-Biedl syndrome 4 protein-like isoform X2

GO:

id name namespace
GO:0090245 axis elongation involved in somitogenesis biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0046907 intracellular transport biological_process
GO:0032402 melanosome transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0046154 rhodopsin metabolic process biological_process
GO:0051877 pigment granule aggregation in cell center biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0001947 heart looping biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K16531 BBS4; Bardet-Biedl syndrome 4 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672425.1 True 3504 mRNA 0.42 16 25615420 25631771

Neighbor

gene id symbol gene type direction distance location
LOC103047119 neo1,LOC108275206 coding downstream 53473 25351525 ~ 25561947 (-)
mpi mpi,LOC106560745,LOC106584640 coding downstream 287867 25317126 ~ 25327553 (-)
LOC103023960 kiaa1644,LOC108274641 coding downstream 514320 25013293 ~ 25101100 (-)
LOC107197705 NA coding downstream 665398 24949044 ~ 24950022 (-)
eps8l2 eps8l2 coding downstream 827062 24742769 ~ 24788358 (-)
adck2 adck2,LOC107669038 coding upstream 23994 25655765 ~ 25661625 (-)
mrps35 mrps35 coding upstream 212846 25844617 ~ 25857522 (-)
cdkn1b NA coding upstream 441326 26073097 ~ 26077993 (-)
yars2 yars2 coding upstream 447605 26079376 ~ 26085001 (-)
LOC103026228 LOC108429453,LOC107558597,LOC107549599,LOC107701195,LOC107668648,LOC105913426 coding upstream 459491 26091262 ~ 26134844 (-)
G76585 adpgk,LOC107549595,LOC107745566,LOC107569355 non-coding downstream 69 25612125 ~ 25615351 (-)
G76579 NA non-coding downstream 18757 25596425 ~ 25596663 (-)
G76570 NA non-coding downstream 50990 25529824 ~ 25564430 (-)
G76453 NA non-coding downstream 377407 25236454 ~ 25238013 (-)
G76438 NA non-coding downstream 402394 25207830 ~ 25213026 (-)
G76590 NA non-coding upstream 5201 25636972 ~ 25645157 (-)
LOC111193115 NA non-coding upstream 5301 25637072 ~ 25639133 (-)
LOC111193116 NA non-coding upstream 8176 25639947 ~ 25641133 (-)
G76595 NA non-coding upstream 81712 25713483 ~ 25713920 (-)
G76676 NA non-coding upstream 130751 25762522 ~ 25830697 (-)
rab3il1 rab3il1,LOC108429468,LOC107549590 other downstream 313652 25282789 ~ 25301768 (-)
G76424 NA other downstream 430951 25184209 ~ 25184469 (-)
G76377 NA other downstream 695055 24914298 ~ 24920365 (-)
LOC103025724 tmem80 other downstream 816804 24791192 ~ 24798616 (-)
deaf1 deaf1,LOC107726848 other downstream 1354890 24240898 ~ 24260530 (-)
LOC103031319 coro2b,LOC108412540,LOC105018662,LOC107549656,LOC107738688 other upstream 1224858 26856629 ~ 26878862 (-)

Expression


Co-expression Network