LOC103023612


Basic Information

Item Value
gene id LOC103023612
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 25680093 ~ 25700055 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672428.1
ACAATTAGTCTGGAACCTGTGAATGAGTTTTCTCCACACTTTATTCTCATCAGGGGTCATCATGAAGATCTGTTTTCAGGGAAAGTAAAACAGCATCTCCAGCCCATAGTGGAGGGTGTGTGAAGAGTGACTGGTCCATGGATTCTCCTCTAAacttcagcagtggaggaggaagctctGGGTCACGaACTGGAACCCAGAGAGCTGCTTCTCCAGTCCCCAGtggagtgtctatgaagagtgacagGTCACTGGGTCCTCCTCCTAACTTCAGTGGTGAAGCTGTGACCTCTGACCCAAAaactgaaacccaGAGAGCAGCTTCTCCAGTCCCCAGTGGAGTGTCTATGCAGAGTGACCGTTCACTGGGTCCTCCTCCTAACTTCAGTGGTGAAGCTGTGACCGCTGACCcaaaagagaagaaaaaaaacattttctgggAAAATTTGGACAGTATATTCAAGgaGCTGCAGCATAAATGTATCTCTCTAGTGAAGAGCGAGCTGAACACATTTAAGAAGCTCCTGAGTACAGATGACCCAGCATGCTCTGAGAAAGAGGTGGAGGATGATCAGAGAGAGGGGGTGCTGAAGATCACACTTCATATCCTGAGGAACATGAAGCAGACAGACCTCGCCAACACACTAGAGAGCCAATTGGCCCCATCCTGTCAACGAAAACTTAAATCCAAACTGAAGGATAAATATCAGAGAATTACTGAAGGAATCTCAGGCCACATAGAGCCAGTACTTCTGAATGAGATTTACACAGAGCTCTTCATCACAGATGGAGTGGGTGGAGATGTAAATCAGGAACATGAAGTGAAGCAGATTGAAGCTGCATCCAGGAAAAGGCCAACACAGGAAACACTAATCAAATGTAATGACATCTTTAAAACCTTACCAGAACAGAAACGGCCGATCAGAACTGTACTGACCaaaggagttgctggaattggaaaaacagtctctgtTCAGAAATTCATTCTTGACTGGACTGAAGGAAAAGTAAACCAGGACATTCTTttcatatttccacttccttttagaGAGCTGAATCTGATGAAGGAGAATAAGCTTAGTCTGGTTAATCTTATTCAGCGTTTCTTCCCAGAAGCCCAAAATTTAAAACCAACACTTTATAAGAGCTACAAGACTGTGTTCAtctttgatggtctggatgagtgTCGACTCCCTCTGGATTTCCAGAACAATGAGAACTTGGTGGAAATAGAAGAGAAAAGGTCAGTTGATGTTCTGCTGACGAACCTCATCAAGGGTaatctgcttccctctgctctacTTTGGATCACCTCTCGCCCAGCAGCAGTCAGTCAGATCCCTCCTGAGTTTGTTGACCGGGTAACAGAAGTGCGGGGTTTCAGTGACCCTCAGAAAGAGGAGTACTTCAAGAAGAGGATCAGGGATCAGGACATGGCCAGCAAAGTCTTCACCCACATCAGGTCTTTAAGAAGCCTCTACACCATGTGCCACATACCAGTCTTCTGCTGGATTACAGCCACTGTTCTAGAAAGAATGCTGAGTGAAGCAGAGAATGGAGAAATCCCCAAAACCCTGACACAGATGTTCACATACTTCCTGATCTTTCAGATCAAGCACAAGAGCCAGAAGTACAGTTGGAAAAGTGACCCTGATCCTAAGCAGACTAGAGAAAGTATTCTGGCTCTGGGGAAACTGGCTTTCCACCAGCTGGAGAAAGGAAATCTGATCTTCTATGAGGAAGATCTAACAGAAATTGGCATCAATATTAAAGATGTGTccgtgtactcaggagtgtgcaCCCAGATTTTTAGACAGGAACATGAACTGCTGAACCTGGGAAAGGTCTTCAGCTTTGTACATCTGAGCATTCAGGAGTTCCTTGCTGCTTTATATGCGTTTCTCCATTTCAAAACAAAGGATCGAAATCTACTAACTCCAAACCACCGAACAACAACCACTGCACTATCTCAACTTTTCAGTAGGTCAACAATGAATGACTTCCTCAACAGTGCCGTGGATAAAGCCTTACAGAGTAAGGGTGGAAACCTGGACCTGTTCCTTCGCTTCCTTCTGGGTCTCTCACTTGAGTCTAATCAGACTCTGTTACAAGTCGTActgacacagaaagagagaagcacTCACAGCAGAAAGGAAACAGTCAGATACATCAAGAAGAAGATTGAGAAGAACTCCTCTCCCGAAAAATGCATCAATCTGTTTCACTGTTTGCATGAACTAAACGATCACTCTCTAGTGCAGGAAGTACAGAAATACCTCAGCAGAGGTGGTGACTATTGTCTTCATCTGGCCAGACTCTCTCCTGCTCAGTGGTCAGCTCTGGTGTTTGTGTTGGTGAATTCAGAAGAGCTGGAGGAGTTTAATCTTATTAAATATCACCCATCAGAAAAGTGTCTTCTGAGGCTGCTGCCAGTAGTCAAAATATCCACAAGAGTTTTACTAGCTTCATGTAATCTTGGAGTAAAGACATGTGAATGTCTGGAATCAGTTTTGAAGCTGGAAAACTTCCTGAATGAGCTGGACCTTAGTAGCAATAACTTGCAGGATTCAGGAATGGAGCTTCTCtttgctggactgaagagttcaaactgtaaactgcagatactcagactagCTTCATGTCATTTAGAAATAAAGACATGTGAAATtctggaatcagttttaaagctggaaaactcctccctgaaagagctTGACCTTAGTAACAATGACCTACAGGATTCAGGTGTGGAGCTGCTTTCTGCTGGACTGGAGAGTTcaaactgtaaactgcagatactcagAATTTCTTTGTGTAATCTTGGAGTAAAGACGTGTGAAACTCTGGGATCAGTTTTAAAGCAGGAAAACTCccccctgaaagagctggacctgagtaacaatgacctgcaggattcaggagtggagctgctctctgctggactaaagagtccacactgtaaactgcagattctcagatTATATGGTTGTATGATCACAGAAAAAGGCTGTTCTTCTCTGGCTTTAGCTGTGAGTTCGAACCCCTCCCACCTAAAAGAGCTGGATTTGACCTACAACCATCCAGGAGAGTCAGGAAAGAAGCTGCTTTCTGCCAGACTGGAGGATCCACACTGCACACTGGAGACACTCAGaatggAACATGGTGGCGAGATCAGAATCAAACCTGGATTAAAGAAGTACGGCTGTGATCTCACACTGGATCCAAACACAGTACACAGTTATCTCACTCTGAGTGAGGAGAACAGGACGGTGGAGAGTGGAGAGCATCTGCAGTCGTATTCGtatcctgatcatccagagagGTTTGAGGGGTATCTGCAGGTTCTGAGTAGAGATTGTGTAACTGGACGCTGTTACTTGGAGGCTGAGTGGAGCGGGAAAGCAGCAGATATAGCTCTGagttataaaaccatcagcaggAAAGAAGGACCAGACTGTGCATTTGGACTAAACATAAACTCTTGGAGTCTGTTGTGCTCTGATAACAGATACTACATTCTTCACAATAAGAACAGAACTGATCTTCCCCTTCCTCCCCCCGGCTGTAGgagagtaggagtgtatgtggactgtcccgCCGGCACTCTGTCCTTTTACAGAGTTTCCACTGAAACACACTCaccctctcactcacacacccttacacacttacacacattctacaccACCTTCAGTCAGCCCCTCTATGCAGGGCTTGGGCTTGGTATAGGCTCCTCATTGCGTCTGTGTAAAATAGAAtaatcctgtgtgtgtgtgtgtgtgtgtgtgtgtgcgagagacaAGGTTTTCATCATTAACAAAAACgaacaaactaaaaacaaagtgaaaaaatgtttatgttaactgaaactaataatgACGGCAGTCAAAAGAAAAAAGggtaactggaactgtattacgtgtttgtaaaagtgttccatgttttctccatttgtgaataatagctttcACTGTGGTCCGTTGTGAgccccaaagccttagaaatgactttgtaaccttttctagACTGACAGATTaatgaatgatttttttaaataatttaataagtgtattttagatttattcagtttattttttatattaaagtttgtttaataatctgaaaaagtatgacaaaaatgcaaacacAATTTGTAAGTAGACAAATAATTTTTCAAGCCACTGTGGTGTATAAGCTCCATCTCTTAGTACTGTTTAAATGAAGCTCAAATGTCCCTGTGTTTGAATATATCCAAAACGCACTTCAGTAGGTTGAAGAGAGCCTCAGCAGTATGTACAAATCTAGGAAAGTAAAAATTACTATCCCCAGAAAGGACATGATCCGCTTTTGTGATGGTGTTTTTTCCACCTGACTCCATCAAGTCAGCAGAACATATCTTAGAAATGCCTTCCACTTTAAATGGATCTGTGGATACCTCCATCCCATCAACAGTGTGACCAAGAAACAATGTAACCAAGCATGTAAGAAGAGGCACTTTTTCAGTGCATGAAATAGAAGTGTGTTTCATGTTGCTGCTGCTTCCCTACTTTCCTTTTTATATTGATGACtatgtattttattctttattttatattttgtttttattttattatcttgcATAACAATTGCTCTTTTGGGTGGAACTGCAATGTGAGATTACAATTTAATTCCACCTCATTTACCACCCCATGTGAtgcaaatgacaataaagtGTTCTTGAATTCTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672428.1 True 4729 mRNA 0.43 14 25680093 25700055

Neighbor

gene id symbol gene type direction distance location
adpgk adpgk,LOC107549595,LOC107569355,LOC107754317 coding upstream 66647 25606787 ~ 25613446 (+)
LOC103046607 scamp2 coding upstream 334046 25327566 ~ 25346047 (+)
LOC103027043 LOC108429467,LOC108275406 coding upstream 363778 25313291 ~ 25316315 (+)
LOC103045999 LOC108429466,LOC106561822 coding upstream 367930 25302235 ~ 25312163 (+)
LOC111193062 NA coding upstream 408839 25269678 ~ 25271254 (+)
dennd2a dennd2a,LOC107701048,LOC107724656,LOC107549597,LOC107669049 coding downstream 26896 25726951 ~ 25778572 (+)
LOC103024360 tead4,LOC101167205,LOC108246608,LOC107549581,LOC107669037,LOC103024360,LOC108429458,LOC103380343 coding downstream 96383 25796438 ~ 25830701 (+)
mansc4 mansc4 coding downstream 139297 25839352 ~ 25843928 (+)
LOC103028784 LOC108429384,LOC107549582,LOC106584451,LOC107558590,LOC106529550 coding downstream 160474 25860529 ~ 26053114 (+)
LOC103026929 LOC108429451,LOC107728337,LOC108275429,LOC107745105,LOC105018463,LOC106584495,LOC107701192,LOC107558594,LOC105913395 coding downstream 536725 26236780 ~ 26286442 (+)
G76552 NA non-coding upstream 25096 25652587 ~ 25654997 (+)
G76543 NA non-coding upstream 33615 25640587 ~ 25646478 (+)
G76541 NA non-coding upstream 34958 25636971 ~ 25645135 (+)
G76540 NA non-coding upstream 36170 25636480 ~ 25643923 (+)
G76539 NA non-coding upstream 37465 25635831 ~ 25642628 (+)
G76536 NA non-coding downstream 13377 25713432 ~ 25713850 (+)
G76646 LOC108429453,LOC107701195,LOC107549599,LOC107728334,LOC108275118,LOC107668648 non-coding downstream 387134 26087189 ~ 26093193 (+)
G76655 NA non-coding downstream 445570 26145625 ~ 26146752 (+)
G76833 NA non-coding downstream 871125 26571180 ~ 26571399 (+)
G76838 NA non-coding downstream 979585 26679640 ~ 26679890 (+)
G76464 NA other upstream 383625 25294501 ~ 25296468 (+)
LOC103026466 LOC108429386,LOC108274988 other upstream 398722 25271256 ~ 25281371 (+)
G76423 NA other upstream 495361 25184085 ~ 25184732 (+)
LOC103022708 NA other upstream 675578 24988396 ~ 25004515 (+)
LOC103022391 parvb,LOC108432702 other upstream 696379 24974941 ~ 24983714 (+)

Expression


Co-expression Network