mansc4 (mansc4)


Basic Information

Item Value
gene id mansc4
gene name mansc4
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 25839352 ~ 25843928 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672431.1
CGCAGGCAGAGACAGGCCGGCGCCTCGGCAGGCTCGCGCTGAGATGATGTGAGGGGTCTTCTCGGAGCTCGGACTAAACGATGATCATCGCATGGAGCGCGCTGTGGCTGTTTTGTTGGCTTAAAGCAGCGGAGGCCGGGTGCTCCCCGACCAGCTACTACAGGAACTGCTGGATCCGCCGCTTCCCCGGACtctacatctctgtggaggagtCTGAGCGCCGAGGAGCCGCTCTGCTGCAGCTCTACCAGGAGGAGAGCGCGCTCAAATGCAGCCGCGCCTGCTGCCTCTCCACCAACTTCTCCTGTAACCTGGCTGTCTTTCATTACAACACCACTCAGGACAGTGCCAACTGCTTTCACCTTCACTGCCCAACACTGGAAAGCTGCATACTCCGCCACAGAGGCAATGTCATCCTCTACAATGTTACTAAAGggGTGGATCCTGACCTACTTGTATTTGGGAACCATTTTAATCCTGAATTCCAAATACTTCCAAACCAAGCCAGACTCAACAACTCGGAACCTTTTTCTTCTGACAAGCGTCAGTTCAACCGACCACACATGGCACCTAGTAGCTCTACCCAGCCTCCCACACCTGCCACTACCACATCTACACCGTCCACTTCACTTACAACTGATGTGCCTGAATCTACTTCTCCTCTCTCGCTTCAGTCTACACAGGACACGCCTCTGGCCTCTTCTGTACAGGGATCCACCCTAAAGACCCCAATTCAACTCAGTTCTACTCATGTACCCACCACCTCCATTTCTACCAGACGGACAACTACAACACCACAGAGTTTCATTCAACAGTTCTCATCAAGACCCCTCCAGCCTACTTTCACAGCCACTACAACTACAGAGTCATCATTCTCCAGTCAGCCCACTTCAGACTTAACATACCAATCTACTGCCCAACCTACTGTTCCAGCAGTTACACTGACACCCACAACAGCACCTTTAACCAGTGAAACGAGACTGAAACCCACAATGTCTTTGTTGACTAATCAAAGAACGTGGGCATCCACAACAACATCTGTAACCACACAGGCATCTACAACAGCCTTAACAACCAATGAAGGCACGTCGGGAGCAGCATCTACAACCAGTGAAACCAAACAGGCATCCACAATAGCAATGACAATCACTGAAGCCACCCAGGCATCCACAACAGAATCTCCCACCACTGAAGCCACATCGACATCCACAATGGAGTCTACCACCACTGAAGCCACAAAGGCATTCACAACTGCATCTCCACCCAATAAAGCCACACTGGTGTCCACAACAGAGTCTACCACCAATGAAGCCACACAGACATCCACAACAGCATATGACACCAGTGAAGCCTCACAGGCATCCACAATAGAGTCTACAACCAATGAAGCCACACTGTTGTCCACAACAGAGTATACCACCAATGAAGCCACACGGACATCCACAACAGCATCCCCCACCATTGAAGCCTCTCAGTCAATCACACCACCATCTACCACCAGACCTAATGCACCCATTAGCACTCAACAGAGTACTACAGAAGAGACCTCAGCCCACAGTACCCTTGTTAGAATCTTACAAAGCTCTACAAAACCAACCACAGCACCAACTCTTCTTACAACAGTCAAAACTACAACTCAGGACCATGTAACTACAACTACACAACCACCAATAGTAATGACTACAAGCCAGACAACCAAAACTCAGCCCTACTCTCAACTGATAAACCCAGTTTCTCCAAAATCGCCACTTACAGAGGAAAGCAGTACTCAGTCTCCAACAGCAAATGGCCCATCACCAGTCTACACCACAAACAATGCGGCTACCGCTGAAGATTCCACAAGATCAACCAGACTGCACTCACAGGCAGCAGTTTCAGTGACAAGCAACGGTTCGGTCTCCACCTCCCCAACTCCCCCTACCAGCATGGAGGACAGCCAGCCATACCCAAACGACACGAAAGGCTACATCAGCCGGAACATTACAACAGGTGACAGCCCGAGGCCTGGAGCCGACGACGGCTTGACGCCAGTGTGGCACCTGGCAGCCAACACTGTCTTGGTAGCCTTGGCCACTTGTGCAACCATAGCGTTCGGTTGTTGTTGTTCAGTGCTCATGGCTGTAAGTTGGAGAGGTAGGAGAAGGAGAAAGGGGAGATACCGGACTACTTTAAACGGGAAGAGAGGCTCGATGCGACTCATCAAATACGTCATTGTGAGGGAGAGCTTGTGAGACAGGTTCTCGAATTGCAAAGTGTTCTATAGAAGCTGCTAATAAATGTCAATGTTATCACTACGCCATCACAGATACTTAAAAGTAGGATGAAGACTTTTGAAGATTCCATTAACTTTGCATTTGCCGCATTTTCCAATTCTCCAATCCTCCATTTGTTAAACTGAGAACCTAGCTGTGTGAACCCAAGCGCACTATTCCAAAGCTCTATATAAAAACTGTTGTGGACAATATTGTGTAAAGCAGCCTAACAGTGACCAGACTCAGTGGATAAAACTTTATTTCCCTCTTATTGGCATTGCCAGTATactgtaatgtttaaaaatcaaGTCACATCATACACTTCTATTCAACCAACTTACAAACCTACAGAAGTTCAGTATTGAAGAATATGTCATTAACCATAGGTCCATACTGATGAATGTTAACACTACTGACTACGCCATTGTAGAACATGTGACCTCTGGACCATGATGAATGTAATGAATTTCACTTATGAGTAAGAGTAAAGTATTCTTTTTAGAATACCCTCAACATGTAATGCAATTTAAaatctaatatattcattaaaCCCTGTGTTTCCCAA

Function

symbol description
mansc4 Predicted to be integral component of membrane.

NR:

description
PREDICTED: MANSC domain-containing protein 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672431.1 True 2817 mRNA 0.48 3 25839352 25843928

Neighbor

gene id symbol gene type direction distance location
LOC103024360 tead4,LOC101167205,LOC108246608,LOC107549581,LOC107669037,LOC103024360,LOC108429458,LOC103380343 coding upstream 8651 25796438 ~ 25830701 (+)
dennd2a dennd2a,LOC107701048,LOC107724656,LOC107549597,LOC107669049 coding upstream 60780 25726951 ~ 25778572 (+)
LOC103023612 NA coding upstream 139297 25680093 ~ 25700055 (+)
adpgk adpgk,LOC107549595,LOC107569355,LOC107754317 coding upstream 225906 25606787 ~ 25613446 (+)
LOC103046607 scamp2 coding upstream 493305 25327566 ~ 25346047 (+)
LOC103028784 LOC108429384,LOC107549582,LOC106584451,LOC107558590,LOC106529550 coding downstream 16601 25860529 ~ 26053114 (+)
LOC103026929 LOC108429451,LOC107728337,LOC108275429,LOC107745105,LOC105018463,LOC106584495,LOC107701192,LOC107558594,LOC105913395 coding downstream 392852 26236780 ~ 26286442 (+)
LOC103027718 akr1d1,LOC108429448,LOC108429446,LOC103366982,LOC103366736,LOC108250100,LOC103380316 coding downstream 631579 26475507 ~ 26484181 (+)
LOC103027405 LOC108429445,LOC108274519,LOC107558592,LOC107668651 coding downstream 646687 26490615 ~ 26514021 (+)
mon2 mon2 coding downstream 671261 26515189 ~ 26570715 (+)
G76536 NA non-coding upstream 125502 25713432 ~ 25713850 (+)
G76552 NA non-coding upstream 184355 25652587 ~ 25654997 (+)
G76543 NA non-coding upstream 192874 25640587 ~ 25646478 (+)
G76541 NA non-coding upstream 194217 25636971 ~ 25645135 (+)
G76540 NA non-coding upstream 195429 25636480 ~ 25643923 (+)
G76646 LOC108429453,LOC107701195,LOC107549599,LOC107728334,LOC108275118,LOC107668648 non-coding downstream 243261 26087189 ~ 26093193 (+)
G76655 NA non-coding downstream 301697 26145625 ~ 26146752 (+)
G76833 NA non-coding downstream 727252 26571180 ~ 26571399 (+)
G76838 NA non-coding downstream 835712 26679640 ~ 26679890 (+)
LOC111193118 NA non-coding downstream 839960 26683888 ~ 26685678 (+)
G76464 NA other upstream 542884 25294501 ~ 25296468 (+)
LOC103026466 LOC108429386,LOC108274988 other upstream 557981 25271256 ~ 25281371 (+)
G76423 NA other upstream 654620 25184085 ~ 25184732 (+)
LOC103022708 NA other upstream 834837 24988396 ~ 25004515 (+)
LOC103022391 parvb,LOC108432702 other upstream 855638 24974941 ~ 24983714 (+)

Expression


Co-expression Network